ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1k09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 214 3e-52
2gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 202 1e-48
3gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 194 2e-46
4emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroel... 194 2e-46
5dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-li... 194 2e-46
6gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 186 6e-44
7gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 178 1e-41
8gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 178 1e-41
9emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 178 1e-41
10gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transpor... 178 1e-41
11gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 178 1e-41
12gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 170 4e-39
13gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 168 1e-38
14gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 155 2e-34
15gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg... 111 3e-21
16gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rp... 105 2e-19
17gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 74 6e-10
18gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 72 2e-09
19gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 60 9e-06
20gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula ... 56 1e-04
21gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotra... 56 1e-04
22gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposo... 56 1e-04
23gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposo... 56 1e-04
24gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkul... 54 6e-04
25gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 ... 54 6e-04
26gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransp... 54 6e-04
27gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotran... 54 6e-04
28gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposo... 54 6e-04
29gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposo... 54 6e-04
30gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotra... 54 6e-04
31gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 52 0.002
32gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 52 0.002
33gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransp... 50 0.009
34gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransp... 50 0.009
35gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotra... 48 0.036
36gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotra... 48 0.036
37gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotra... 48 0.036
38gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposo... 48 0.036
39gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposo... 48 0.036
40gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, com... 42 2.2
41gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, com... 42 2.2
42emb|AL833807.5| Mouse DNA sequence from clone RP23-305G2 on chro... 42 2.2
43gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete... 40 8.8
44gb|AF109907.1|DJ534K4 Homo sapiens S164 gene, partial cds; PS1 a... 40 8.8
45gb|AC132837.11| Mus musculus chromosome 18, clone RP24-490M12, c... 40 8.8
46gb|AC146605.3| Mus musculus BAC clone RP23-304J7 from chromosome... 40 8.8
47ref|XM_677537.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.8
48gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome... 40 8.8
49gb|AC122056.4| Mus musculus BAC clone RP24-466A3 from chromosome... 40 8.8
50ref|NM_019226.2| Rattus norvegicus dynein cytoplasmic 1 heavy ch... 40 8.8
51emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on ch... 40 8.8
52emb|BX957303.8| Zebrafish DNA sequence from clone DKEYP-116B6 in... 40 8.8
53emb|CR354378.21| Zebrafish DNA sequence from clone CH211-131D10 ... 40 8.8
54emb|BX510329.14| Zebrafish DNA sequence from clone RP71-67M5 in ... 40 8.8
55emb|Z98254.1|DMC114E2 Drosophila melanogaster cosmid 114E2 40 8.8
56gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL... 40 8.8
57emb|AL591376.11| Mouse DNA sequence from clone RP23-404C20 on ch... 40 8.8
58emb|BX571833.6| Zebrafish DNA sequence from clone DKEY-287J13, c... 40 8.8
59gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.8
60gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 8.8
61dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
62gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, comple... 40 8.8
63ref|XM_579426.1| PREDICTED: Rattus norvegicus dynein, cytoplasmi... 40 8.8
64gb|AC026875.4|AC026875 Genomic sequence for Arabidopsis thaliana... 40 8.8
65dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
66gb|AC004858.2|AC004858 Homo sapiens PAC clone RP4-687K1 from 14,... 40 8.8
67dbj|AK068014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
68emb|AL442663.3|CNS07ECV Human chromosome 14 DNA sequence BAC R-1... 40 8.8
69gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 ... 40 8.8
70gb|AE015927.1| Clostridium tetani E88, complete genome 40 8.8
71emb|CR381616.9| Zebrafish DNA sequence from clone CH211-129O18 i... 40 8.8
72emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on ch... 40 8.8
73gb|L08505.1|RATDYNEINC Rattus norvegicus cytoplasmic dynein heav... 40 8.8
74dbj|D13896.1|RATCDHC Rat mRNA for cytoplasmic dynein heavy chain... 40 8.8 
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
             and complete sequences
          Length = 11820

 Score =  214 bits (108), Expect = 3e-52
 Identities = 138/146 (94%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                         
Query: 2     tacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgact 61
             |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 11707 tacatcagagtcacatcagtacattacataatcatcaagagtaag-agcagggtccgact 11649

                                                                         
Query: 62    atggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctgc 121
             | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11648 acggacgaaaacaaacgag-aaaaataagaacgacgtccatccttgctatcccaggctgc 11590

                                       
Query: 122   cgtcctagaacccatcctagatcgat 147
             || ||| |||||||||||||||||||
Sbjct: 11589 cggcctggaacccatcctagatcgat 11564



 Score =  178 bits (90), Expect = 1e-41
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
            ||||||||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 4170 ctacatcagagtcacatcagtacattacatcatcatcaagagtaag-agcagggtccgac 4112

                                                                        
Query: 61   tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
            || ||||||||||||||||   |||| ||||||||| |||||||||||||||||||||||
Sbjct: 4111 tacggacgaaaacaaacgac--aaaagaagaacgacatccatccttgctatcccaggctg 4054

                                       
Query: 121  ccgtcctagaacccatcctagatcgat 147
            ||| ||| |||||||||||||||||||
Sbjct: 4053 ccggcctggaacccatcctagatcgat 4027



 Score =  145 bits (73), Expect = 2e-31
 Identities = 88/93 (94%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596

                                             
Query: 294  gggtcctcactttccgacacgcttgcggaactc 326
            | ||||||||  |||| ||||||||||||||||
Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactc 2563



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 11547 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 11488

              
Query: 236   g 236
             |
Sbjct: 11487 g 11487



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                        
Query: 176  caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
            |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948

             
Query: 236  g 236
            |
Sbjct: 3947 g 3947



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 81/92 (88%), Gaps = 1/92 (1%)
 Strand = Plus / Minus

                                                                         
Query: 235   tgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaacg 294
             |||||||||||||||||||||||   ||| ||| ||| | | ||||  ||||||||||||
Sbjct: 10185 tgagatcccgcttggaagaagaacaactcggtggagtcggcaaaccatcgtagtcgaacg 10126

                                             
Query: 295   ggtcctcactttccgacacgcttgcggaactc 326
             ||||||||| ||||||||||||||||||||||
Sbjct: 10125 ggtcctcac-ttccgacacgcttgcggaactc 10095
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  202 bits (102), Expect = 1e-48
 Identities = 137/147 (93%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                          
Query: 1      ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
              ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 327136 ctacatcagagtcacatcagtacattacataatcatcaagagtaag-agcagggtccgac 327078

                                                                          
Query: 61     tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
              || |||||||||||||||||  |||| |||||||||||||||||||||||||||||||||
Sbjct: 327077 tacggacgaaaacaaacgag--aaaagaagaacgacgtccatccttgctatcccaggctg 327020

                                         
Query: 121    ccgtcctagaacccatcctagatcgat 147
              ||| ||| |||||||||||||||||||
Sbjct: 327019 ccggcctggaacccatcctagatcgat 326993



 Score =  167 bits (84), Expect = 6e-38
 Identities = 133/147 (90%), Gaps = 6/147 (4%)
 Strand = Plus / Minus

                                                                          
Query: 1      ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
              ||||||||| ||||||||| ||||||||||   ||||||| ||||| |||||||||||||
Sbjct: 131533 ctacatcagagtcacatcagtacattacat---catcaagagtaag-agcagggtccgac 131478

                                                                          
Query: 61     tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
              || ||| |||||||||||||  |||| |||||||||||||||||||||||||||||||||
Sbjct: 131477 tacggaagaaaacaaacgag--aaaagaagaacgacgtccatccttgctatcccaggctg 131420

                                         
Query: 121    ccgtcctagaacccatcctagatcgat 147
              ||| ||| |||||||||||||||||||
Sbjct: 131419 ccgccctggaacccatcctagatcgat 131393



 Score =  129 bits (65), Expect = 1e-26
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                          
Query: 234    ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
              |||||||||| |||||||||||||   |||||||||||||||||||| ||||||||||||
Sbjct: 325599 ctgagatcccacttggaagaagaacaactccgtgaagtagacgaaccaacgtagtcgaac 325540

                                               
Query: 294    gggtcctcactttccgacacgcttgcggaactc 326
              |||||||||| |||||||||||||||| |||||
Sbjct: 325539 gggtcctcacattccgacacgcttgcgaaactc 325507



 Score =  129 bits (65), Expect = 1e-26
 Identities = 84/89 (94%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 234    ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
              |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||
Sbjct: 130044 ctgagatcccgcttggaagaagaatgtctccgtgaagcacacgaaccgacgtagtcgaac 129985

                                           
Query: 294    gggtcctcactttccgacacgcttgcgga 322
              ||||||||||  |||||||||||||||||
Sbjct: 129984 gggtcctcac-atccgacacgcttgcgga 129957



 Score =  121 bits (61), Expect = 3e-24
 Identities = 83/89 (93%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 234    ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
              |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| 
Sbjct: 177377 ctgagatcccgcttggaagaagaatgtctccgtgaagaacacgaaccgacgtagtcgaat 177318

                                           
Query: 294    gggtcctcactttccgacacgcttgcgga 322
              ||||||||||  |||||||||||||||||
Sbjct: 177317 gggtcctcac-atccgacacgcttgcgga 177290



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                          
Query: 176    caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
              |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct: 326973 caactccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtacctgcaact 326914

               
Query: 236    g 236
              |
Sbjct: 326913 g 326913



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                          
Query: 176    caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
              |||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct: 131376 caactccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctgcaact 131317

               
Query: 236    g 236
              |
Sbjct: 131316 g 131316
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  194 bits (98), Expect = 2e-46
 Identities = 136/147 (92%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                          
Query: 1      ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
              ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 102802 ctacatcagagtcacatcagtacattacataatcatcaagagtaag-agcagggtccgac 102860

                                                                          
Query: 61     tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
              || ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 102861 tacggacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggctg 102918

                                         
Query: 121    ccgtcctagaacccatcctagatcgat 147
              ||| ||| |||||||||||||||||||
Sbjct: 102919 ccggcctggaacccatcctagatcgat 102945



 Score =  105 bits (53), Expect = 2e-19
 Identities = 84/93 (90%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                          
Query: 234    ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
              |||||||||||| |||||||||||   |||||||||| ||||||||||||||||||||||
Sbjct: 104340 ctgagatcccgcctggaagaagaacaactccgtgaagcagacgaaccgacgtagtcgaac 104399

                                               
Query: 294    gggtcctcactttccgacacgcttgcggaactc 326
              ||||||||||  |||| ||||| ||||||||||
Sbjct: 104400 gggtcctcacaatccggcacgc-tgcggaactc 104431



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 176    caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
              ||||| |||||||||||||||| ||||| |||||| |||||||||| || ||||||||||
Sbjct: 102965 caacttcaaatgaacaatcaacgcgctcacgtcaaataacctttacctgtacctgcaact 103024

               
Query: 236    g 236
              |
Sbjct: 103025 g 103025
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>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement
          Length = 13271

 Score =  194 bits (98), Expect = 2e-46
 Identities = 136/147 (92%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
             ||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 10530 ctacatcagagtcacatcaatacattacataaacatcaagagtaag-agcagggtccgac 10472

                                                                         
Query: 61    tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
             || ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 10471 tacggacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggctg 10414

                                        
Query: 121   ccgtcctagaacccatcctagatcgat 147
             ||| ||| |||||||||||||||||||
Sbjct: 10413 ccggcctggaacccatcctagatcgat 10387



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||||||||||||||||||  |||||| ||||| ||||||||||||| ||||||||||
Sbjct: 10367 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 10308

              
Query: 236   g 236
             |
Sbjct: 10307 g 10307
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>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement
            BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR
            sequence
          Length = 3130

 Score =  194 bits (98), Expect = 2e-46
 Identities = 136/147 (92%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
            ||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 2973 ctacatcagagtcacatcaatacattacataaacatcaagagtaag-agcagggtccgac 2915

                                                                        
Query: 61   tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
            || ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 2914 tacggacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggctg 2857

                                       
Query: 121  ccgtcctagaacccatcctagatcgat 147
            ||| ||| |||||||||||||||||||
Sbjct: 2856 ccggcctggaacccatcctagatcgat 2830



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 176  caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
            |||||||||||||||||||||  |||||| ||||| ||||||||||||| ||||||||||
Sbjct: 2810 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 2751

             
Query: 236  g 236
            |
Sbjct: 2750 g 2750
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  186 bits (94), Expect = 6e-44
 Identities = 135/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
             ||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 64870 ctacatcagagtcacatcagtacattacataatcatcaagagtaag-agcagggtccgtc 64928

                                                                         
Query: 61    tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
             || ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 64929 tacggacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggctg 64986

                                        
Query: 121   ccgtcctagaacccatcctagatcgat 147
             ||| ||| |||||||||||||||||||
Sbjct: 64987 ccggcctggaacccatcctagatcgat 65013



 Score =  145 bits (73), Expect = 2e-31
 Identities = 89/93 (95%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                         
Query: 234   ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
             ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 66389 ctgagatcctgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 66448

                                              
Query: 294   gggtcctcactttccgacacgcttgcggaactc 326
             ||||||||||  |||||||||||||||||||||
Sbjct: 66449 gggtcctcac-atccgacacgcttgcggaactc 66480



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||||||||||||||||||||||||||| |||||||| |||  | || ||||||||||
Sbjct: 65036 caactccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctgtacctgcaact 65095

              
Query: 236   g 236
             |
Sbjct: 65096 g 65096
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score =  178 bits (90), Expect = 1e-41
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
             ||||||||| ||||||| | | |||||||||||||||||| ||||| |||||||||||||
Sbjct: 68174 ctacatcagagtcacataagttcattacataatcatcaagagtaag-agcagggtccgac 68232

                                                                         
Query: 61    tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
             || ||||||||||||||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 68233 tacggacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggctg 68290

                                        
Query: 121   ccgtcctagaacccatcctagatcgat 147
             ||| ||| |||||||||||||||||||
Sbjct: 68291 ccggcctggaacccatcctagatcgat 68317



 Score =  137 bits (69), Expect = 5e-29
 Identities = 88/93 (94%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                         
Query: 234   ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 69688 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 69747

                                              
Query: 294   gggtcctcactttccgacacgcttgcggaactc 326
             ||||||||||  |||| ||||| ||||||||||
Sbjct: 69748 gggtcctcacaatccggcacgc-tgcggaactc 69779



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||||||||||||||||||  |||||||||||||||||| |||| || ||||||||||
Sbjct: 68334 caactccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctgcaact 68393

              
Query: 236   g 236
             |
Sbjct: 68394 g 68394
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>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  178 bits (90), Expect = 1e-41
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
            ||||||||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 4170 ctacatcagagtcacatcagtacattacatcatcatcaagagtaag-agcagggtccgac 4112

                                                                        
Query: 61   tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
            || ||||||||||||||||   |||| ||||||||| |||||||||||||||||||||||
Sbjct: 4111 tacggacgaaaacaaacgac--aaaagaagaacgacatccatccttgctatcccaggctg 4054

                                       
Query: 121  ccgtcctagaacccatcctagatcgat 147
            ||| ||| |||||||||||||||||||
Sbjct: 4053 ccggcctggaacccatcctagatcgat 4027



 Score =  145 bits (73), Expect = 2e-31
 Identities = 88/93 (94%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596

                                             
Query: 294  gggtcctcactttccgacacgcttgcggaactc 326
            | ||||||||  |||| ||||||||||||||||
Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactc 2563



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                        
Query: 176  caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
            |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948

             
Query: 236  g 236
            |
Sbjct: 3947 g 3947
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  178 bits (90), Expect = 1e-41
 Identities = 135/147 (91%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
             ||||||||| ||||||||| |||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 37310 ctacatcagagtcacatcagtacattacataatcatcaagagtaag-agcggggtccgac 37368

                                                                         
Query: 61    tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
             || |||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||
Sbjct: 37369 tacggacgaaaacaaacgag--aaaatga-aacgacgtccatccttgctatcccaggctg 37425

                                        
Query: 121   ccgtcctagaacccatcctagatcgat 147
             ||| ||| |||||||||||||||||||
Sbjct: 37426 ccggcctggaacccatcctagatcgat 37452



 Score =  153 bits (77), Expect = 8e-34
 Identities = 89/93 (95%)
 Strand = Plus / Plus

                                                                         
Query: 234   ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
             ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 38836 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaactgacgtagtcgaac 38895

                                              
Query: 294   gggtcctcactttccgacacgcttgcggaactc 326
             ||||||||||  |||||||||||||||||||||
Sbjct: 38896 gggtcctcacaatccgacacgcttgcggaactc 38928



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||| ||||||||||||| | ||||||||||||||||||||||| || ||||||||||
Sbjct: 37472 caactcaaaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtacctgcaact 37531

              
Query: 236   g 236
             |
Sbjct: 37532 g 37532
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>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene,
            complete cds
          Length = 6561

 Score =  178 bits (90), Expect = 1e-41
 Identities = 131/143 (91%), Gaps = 3/143 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
            ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 2572 ctacatcagagtcacatcagtacattacataatcatcaagggtaag-agcagggtccgac 2630

                                                                        
Query: 61   tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
            || |||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||
Sbjct: 2631 tacggacgaaaacaaccgag--aaaagaagaacgacgtccatccttgctatcccaggctg 2688

                                   
Query: 121  ccgtcctagaacccatcctagat 143
            |||  || |||||||||||||||
Sbjct: 2689 ccggtctggaacccatcctagat 2711



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                        
Query: 176  caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
            ||||||||||| ||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct: 2762 caactccaaataaacaatccacgcgctcgcgtcaagtaacctttacatgtacttgcaact 2821

             
Query: 236  g 236
            |
Sbjct: 2822 g 2822
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score =  178 bits (90), Expect = 1e-41
 Identities = 134/147 (91%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 1     ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
             ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 11049 ctacatcagagtcacatcagtacattacataatcatcaagagtaag-agcagggtccgac 10991

                                                                         
Query: 61    tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
             || ||||||||||||||||   |||| |||||||||||||||||||||||||| ||| ||
Sbjct: 10990 tacggacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatccgagggtg 10933

                                        
Query: 121   ccgtcctagaacccatcctagatcgat 147
             ||| ||| |||||||||||||||||||
Sbjct: 10932 ccggcctggaacccatcctagatcgat 10906



 Score =  137 bits (69), Expect = 5e-29
 Identities = 88/93 (94%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 9538 ctgagatcccgcttggaagaggaatgcctccgtgaagcagacgaaccgacgtagtcgaac 9479

                                             
Query: 294  gggtcctcactttccgacacgcttgcggaactc 326
            ||||||||||  |||||||||||||| ||||||
Sbjct: 9478 gggtcctcac-atccgacacgcttgcagaactc 9447



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||||||||||||||||||| ||||| ||| ||||| | ||||| || ||||||||||
Sbjct: 10886 caactccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtacctgcaact 10827

              
Query: 236   g 236
             |
Sbjct: 10826 g 10826
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score =  170 bits (86), Expect = 4e-39
 Identities = 134/147 (91%), Gaps = 4/147 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
            ||||||||| ||||| ||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 3339 ctacatcagagtcacctcagtacattacataatcatcaagagtaag-agcagggtccgac 3397

                                                                        
Query: 61   tatggacgaaaa-caaacgagnaaaaataagaacgacgtccatccttgctatcccaggct 119
            |||||| ||||| |||||||   |||| ||||||||||||||||||||||||||||||||
Sbjct: 3398 tatggatgaaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggct 3455

                                       
Query: 120  gccgtcctagaacccatcctagatcga 146
            |||| ||| ||||||||||||||||||
Sbjct: 3456 gccggcctggaacccatcctagatcga 3482



 Score =  153 bits (77), Expect = 8e-34
 Identities = 90/93 (96%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4859 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 4918

                                             
Query: 294  gggtcctcactttccgacacgcttgcggaactc 326
            ||||||||||  |||||||||||||||||||||
Sbjct: 4919 gggtcctcac-atccgacacgcttgcggaactc 4950



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 176  caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
            |||||||| ||||||||||||| ||||| |||| | |||||||||| || ||||||||||
Sbjct: 3503 caactccagatgaacaatcaacgcgctcacgtcgaataacctttacctgtacctgcaact 3562

             
Query: 236  g 236
            |
Sbjct: 3563 g 3563
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>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  168 bits (85), Expect = 1e-38
 Identities = 131/147 (89%), Gaps = 9/147 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
            ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 4164 ctacatcagagtcacatcagtacattacataatcatcaagagtaag-agcagggtccgac 4106

                                                                        
Query: 61   tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
            || ||||||||||||||||| |        ||||||||||||||||||||||||||||||
Sbjct: 4105 tacggacgaaaacaaacgagaa--------aacgacgtccatccttgctatcccaggctg 4054

                                       
Query: 121  ccgtcctagaacccatcctagatcgat 147
            ||| ||| |||||||||||||||||||
Sbjct: 4053 ccggcctggaacccatcctagatcgat 4027



 Score =  145 bits (73), Expect = 2e-31
 Identities = 88/93 (94%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaac 2596

                                             
Query: 294  gggtcctcactttccgacacgcttgcggaactc 326
            | ||||||||  |||| ||||||||||||||||
Sbjct: 2595 gagtcctcacaatccggcacgcttgcggaactc 2563



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                        
Query: 176  caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
            |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948

             
Query: 236  g 236
            |
Sbjct: 3947 g 3947
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score =  155 bits (78), Expect = 2e-34
 Identities = 131/147 (89%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctacatcagngtcacatcaatacattacataatcatcaagngtaagnagcagggtccgac 60
             ||||||||| ||| | ||| |||||||||||| ||| ||| ||||| |||||||||||||
Sbjct: 16400 ctacatcagagtcgcttcagtacattacataaacatgaagagtaag-agcagggtccgac 16458

                                                                         
Query: 61    tatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggctg 120
             ||  |||||||||||||||   |||| |||||||||||||||||||||||||||||||||
Sbjct: 16459 tacagacgaaaacaaacgac--aaaagaagaacgacgtccatccttgctatcccaggctg 16516

                                        
Query: 121   ccgtcctagaacccatcctagatcgat 147
             ||| ||| |||||||||||||||||||
Sbjct: 16517 ccggcctggaacccatcctagatcgat 16543



 Score =  117 bits (59), Expect = 5e-23
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                         
Query: 234   ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
             ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||
Sbjct: 17918 ctgagatcccgcttggaagaagaatgcctgcgtgaagctgacgaaccgacgtagtcgaac 17977

                                    
Query: 294   gggtcctcactttccgacacgct 316
             ||||||||||  |||| ||||||
Sbjct: 17978 gggtcctcacaatccggcacgct 18000



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Plus

                                                                         
Query: 176   caactccaaatgaacaatcaacacgctcgcgtcaagtaacctttacatgcacctgcaact 235
             |||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 16563 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 16622

              
Query: 236   g 236
             |
Sbjct: 16623 g 16623
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>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
            sequence
          Length = 3124

 Score =  111 bits (56), Expect = 3e-21
 Identities = 126/148 (85%), Gaps = 8/148 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctacatcagngtcacatcaatacattacat--aatcatcaagngtaagnagcagggtccg 58
            ||||||||| |||||||| |||||||||||  ||||  || |   ||| |||||||||||
Sbjct: 2381 ctacatcagagtcacatcgatacattacatacaatcgccatgaagaag-agcagggtccg 2323

                                                                        
Query: 59   actatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttgctatcccaggc 118
            |||| | ||||||||||||||  |     |||||||||||||||||||||||||||||||
Sbjct: 2322 actacgaacgaaaacaaacgataa-----aagaacgacgtccatccttgctatcccaggc 2268

                                        
Query: 119  tgccgtcctagaacccatcctagatcga 146
            ||||| ||| ||||||||||||||||||
Sbjct: 2267 tgccgacctggaacccatcctagatcga 2240



 Score =  105 bits (53), Expect = 2e-19
 Identities = 83/93 (89%)
 Strand = Plus / Minus

                                                                       
Query: 234 ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
           ||||||||| |||||||||||||| |  ||||||||| ||||||||| |||||| |||||
Sbjct: 865 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 806

                                            
Query: 294 gggtcctcactttccgacacgcttgcggaactc 326
           || ||||||| |||||||||||||||| |||||
Sbjct: 805 ggttcctcacattccgacacgcttgcgaaactc 773
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>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic
            sequence
          Length = 7321

 Score =  105 bits (53), Expect = 2e-19
 Identities = 83/93 (89%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            ||||||||| |||||||||||||| |  ||||||||| ||||||||| |||||| |||||
Sbjct: 6094 ctgagatcctgcttggaagaagaacgaatccgtgaagcagacgaaccaacgtagccgaac 6035

                                             
Query: 294  gggtcctcactttccgacacgcttgcggaactc 326
            || ||||||| |||||||||||||||| |||||
Sbjct: 6034 ggttcctcacattccgacacgcttgcgaaactc 6002
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 85/99 (85%), Gaps = 9/99 (9%)
 Strand = Plus / Minus

                                                                        
Query: 48   agcagggtccgactatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttg 107
            ||||||||||||||| ||||||||||||||||   |||||      ||| ||||||||||
Sbjct: 4227 agcagggtccgactacggacgaaaacaaacgat--aaaat------gacatccatccttg 4176

                                                   
Query: 108  ctatcccaggctgccgtcctagaacccatcctagatcga 146
            |||||||||||||||| ||| |||||||||||| |||||
Sbjct: 4175 ctatcccaggctgccg-cctggaacccatcctatatcga 4138



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            |||||||||||||||||||||||| |  ||||||||| |||||| || || |||||||||
Sbjct: 2787 ctgagatcccgcttggaagaagaacgaatccgtgaagaagacgagccaacatagtcgaac 2728

                      
Query: 294  gggtcctcac 303
            |  |||||||
Sbjct: 2727 gaatcctcac 2718
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 236  gagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaacgg 295
            |||||||||||||||||||||| |   |||||||||| ||||||| ||||||||||||| 
Sbjct: 2583 gagatcccgcttggaagaagaacgaaaccgtgaagtaaacgaaccaacgtagtcgaacga 2524

                    
Query: 296  gtcctcac 303
             |||||||
Sbjct: 2523 atcctcac 2516



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 99   ccatccttgctatcccaggctgccgtcctagaacccatcctagatc 144
            ||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct: 3985 ccatccttgctatcccaggctgccg-cctggaacccatcctggatc 3941



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 48   agcagggtccgactatggacgaaaacaaacga 79
            |||||||||  |||| ||||||||||||||||
Sbjct: 4028 agcagggtctaactacggacgaaaacaaacga 3997
to top
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                          
Query: 234    ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
              |||| |||||||  |||||||||| |  ||| |||||||||| ||| |||||||||||||
Sbjct: 194904 ctgaaatcccgcaaggaagaagaacgagtccatgaagtagacaaacggacgtagtcgaac 194963

                        
Query: 294    gggtcctcac 303
              || |||||||
Sbjct: 194964 ggatcctcac 194973
to top
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon,
           partial sequence
          Length = 3434

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 63/74 (85%), Gaps = 8/74 (10%)
 Strand = Plus / Minus

                                                                       
Query: 48  agcagggtccgactatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttg 107
           ||||||||||||||| ||||||||||||||||   |||||      ||| ||||||||||
Sbjct: 66  agcagggtccgactacggacgaaaacaaacgat--aaaat------gacatccatccttg 15

                         
Query: 108 ctatcccaggctgc 121
           ||||||||||||||
Sbjct: 14  ctatcccaggctgc 1
to top
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial
           sequence
          Length = 3862

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 63/74 (85%), Gaps = 8/74 (10%)
 Strand = Plus / Minus

                                                                       
Query: 48  agcagggtccgactatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttg 107
           |||||||||||||||  |||||||||||||||       ||| |||||| ||||||||||
Sbjct: 66  agcagggtccgactacagacgaaaacaaacga-------taa-aacgacatccatccttg 15

                         
Query: 108 ctatcccaggctgc 121
           ||||||||||||||
Sbjct: 14  ctatcccaggctgc 1
to top
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial
           sequence
          Length = 3622

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 63/74 (85%), Gaps = 8/74 (10%)
 Strand = Plus / Minus

                                                                       
Query: 48  agcagggtccgactatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttg 107
           ||||||||||||||| ||||||||||||||||   |||||      ||| ||||||||||
Sbjct: 66  agcagggtccgactacggacgaaaacaaacgat--aaaat------gacatccatccttg 15

                         
Query: 108 ctatcccaggctgc 121
           ||||||||||||||
Sbjct: 14  ctatcccaggctgc 1
to top
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial
           sequence
          Length = 3613

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 63/74 (85%), Gaps = 8/74 (10%)
 Strand = Plus / Minus

                                                                       
Query: 48  agcagggtccgactatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttg 107
           ||||||||||||||| ||||||||||||||||   |||||      ||| ||||||||||
Sbjct: 66  agcagggtccgactacggacgaaaacaaacgat--aaaat------gacatccatccttg 15

                         
Query: 108 ctatcccaggctgc 121
           ||||||||||||||
Sbjct: 14  ctatcccaggctgc 1
to top
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon,
           partial sequence
          Length = 4001

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 91  aacgacgtccatccttgctatcccaggctgc 121
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
to top
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula
           retrotransposon, partial sequence
          Length = 3935

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 91  aacgacgtccatccttgctatcccaggctgc 121
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
to top
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial
           sequence
          Length = 3997

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 91  aacgacgtccatccttgctatcccaggctgc 121
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
to top
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial
           sequence
          Length = 4120

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 91  aacgacgtccatccttgctatcccaggctgc 121
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
to top
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial
           sequence
          Length = 2924

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 91  aacgacgtccatccttgctatcccaggctgc 121
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
to top
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial
           sequence
          Length = 2923

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 91  aacgacgtccatccttgctatcccaggctgc 121
           |||||| ||||||||||||||||||||||||
Sbjct: 31  aacgacatccatccttgctatcccaggctgc 1
to top
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/93 (83%), Gaps = 9/93 (9%)
 Strand = Plus / Minus

                                                                        
Query: 48   agcagggtccgactatggacgaaaacaaacgagnaaaaataagaacgacgtccatccttg 107
            ||||||||||||||| |||||||| |||||       ||||| || ||| ||||||||||
Sbjct: 4339 agcagggtccgactacggacgaaatcaaac-------aataa-aatgacatccatccttg 4288

                                             
Query: 108  ctatcccaggctgccgtcctagaacccatccta 140
            |||||| ||||||||| ||||||| ||||||||
Sbjct: 4287 ctatcctaggctgccg-cctagaatccatccta 4256



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
            ||||||||||||| |||||||||| |  ||| ||||| ||| || || |||| |||||||
Sbjct: 2873 ctgagatcccgctcggaagaagaacgattccatgaagaagatgagccaacgttgtcgaac 2814

                      
Query: 294  gggtcctcac 303
            |  |||||||
Sbjct: 2813 gaatcctcac 2804



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    ctacatcagngtcacatcaataca 24
            ||||||||| ||||||||||||||
Sbjct: 4389 ctacatcagagtcacatcaataca 4366
to top
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 234   ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
             |||| |||||||  |||||||||| |  ||| |||||||||| ||| |||||||||||| 
Sbjct: 73416 ctgaaatcccgcaaggaagaagaacgagtccatgaagtagacaaacggacgtagtcgaat 73357

                       
Query: 294   gggtcctcac 303
             || |||||||
Sbjct: 73356 ggatcctcac 73347
to top
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 234   ctgagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaac 293
             |||| |||||||  |||||||||| |  ||| ||||| |||| ||| ||||||| |||||
Sbjct: 85802 ctgaaatcccgcaaggaagaagaacgagtccatgaagaagacaaacggacgtagacgaac 85861

                       
Query: 294   gggtcctcac 303
             ||||||||||
Sbjct: 85862 gggtcctcac 85871
to top
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial
          sequence
          Length = 3764

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                       
Query: 48 agcagggtccgactatggacgaaaacaaa 76
          ||||||||||||||| |||||||||||||
Sbjct: 66 agcagggtccgactacggacgaaaacaaa 38



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
to top
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial
          sequence
          Length = 3774

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                       
Query: 48 agcagggtccgactatggacgaaaacaaa 76
          ||||||||||||||| |||||||||||||
Sbjct: 66 agcagggtccgactacggacgaaaacaaa 38



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
to top
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial
          sequence
          Length = 3698

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 48 agcagggtccgactatggacgaaaacaaacga 79
          ||||||||||| ||| ||||||||||||||||
Sbjct: 66 agcagggtccggctacggacgaaaacaaacga 35



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
to top
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial
          sequence
          Length = 3804

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 48 agcagggtccgactatggacgaaaacaaacga 79
          ||||||||||| ||| ||||||||||||||||
Sbjct: 66 agcagggtccggctacggacgaaaacaaacga 35



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
to top
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial
          sequence
          Length = 3943

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 48 agcagggtccgactatggacgaaaacaaacga 79
          ||||||||||| ||| ||||||||||||||||
Sbjct: 66 agcagggtccggctacggacgaaaacaaacga 35



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1
to top
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula,
           complete sequence
          Length = 3695

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 48 agcagggtccgactatggacgaaaacaaacga 79
          ||||||||||  ||| ||||||||||||||||
Sbjct: 66 agcagggtccatctacggacgaaaacaaacga 35
to top
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula,
           complete sequence
          Length = 3683

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 98  tccatccttgctatcccaggctgc 121
           ||||||||||||||||||||||||
Sbjct: 24  tccatccttgctatcccaggctgc 1



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 48 agcagggtccgactatggacgaaaa 72
          ||||||||||||||| |||||||||
Sbjct: 66 agcagggtccgactacggacgaaaa 42
to top
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence
          Length = 172618

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    tccttgctatcccaggctgcc 122
              |||||||||||||||||||||
Sbjct: 170021 tccttgctatcccaggctgcc 170001
to top
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence
          Length = 168864

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   tccttgctatcccaggctgcc 122
             |||||||||||||||||||||
Sbjct: 20040 tccttgctatcccaggctgcc 20020
to top
>emb|AL833807.5| Mouse DNA sequence from clone RP23-305G2 on chromosome 2, complete
             sequence
          Length = 65071

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   tctgttgccaggtcggggatg 390
             |||||||||||||||||||||
Sbjct: 32463 tctgttgccaggtcggggatg 32443
to top
>gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete sequence
          Length = 186002

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   aaactgaaaacacaaacaga 363
             ||||||||||||||||||||
Sbjct: 41279 aaactgaaaacacaaacaga 41260
to top
>gb|AF109907.1|DJ534K4 Homo sapiens S164 gene, partial cds; PS1 and hypothetical protein
            genes, complete cds; and S171 gene, partial cds
          Length = 216387

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 572  aaaaacagggaaaaacagagagga 595
            ||||| ||||||||||||||||||
Sbjct: 5790 aaaaaaagggaaaaacagagagga 5767
to top
>gb|AC132837.11| Mus musculus chromosome 18, clone RP24-490M12, complete sequence
          Length = 139563

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   atgctgcaaaaacagggaaa 584
             ||||||||||||||||||||
Sbjct: 47862 atgctgcaaaaacagggaaa 47881
to top
>gb|AC146605.3| Mus musculus BAC clone RP23-304J7 from chromosome 14, complete sequence
          Length = 225868

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 604    gcaaaggaaaaggaggaagg 623
              ||||||||||||||||||||
Sbjct: 148214 gcaaaggaaaaggaggaagg 148233
to top
>ref|XM_677537.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9360.2), mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 601 agagcaaaggaaaaggagga 620
           ||||||||||||||||||||
Sbjct: 541 agagcaaaggaaaaggagga 560
to top
>gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome 19, complete sequence
          Length = 165998

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   gcaccatgacatggggatgc 568
             ||||||||||||||||||||
Sbjct: 60213 gcaccatgacatggggatgc 60194
to top
>gb|AC122056.4| Mus musculus BAC clone RP24-466A3 from chromosome 14, complete sequence
          Length = 179685

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 604   gcaaaggaaaaggaggaagg 623
             ||||||||||||||||||||
Sbjct: 16733 gcaaaggaaaaggaggaagg 16714
to top
>ref|NM_019226.2| Rattus norvegicus dynein cytoplasmic 1 heavy chain 1 (Dync1h1), mRNA
          Length = 15500

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  gccacgagcttgggcaccat 555
            ||||||||||||||||||||
Sbjct: 7786 gccacgagcttgggcaccat 7767
to top
>emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on chromosome 13 Contains the
             3' end of the NBEA gene for neurobeachin (BCL8B FLJ10197
             KIAA1544) and a novel gene, complete sequence
          Length = 162081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 601   agagcaaaggaaaaggaggaagga 624
             |||||||| |||||||||||||||
Sbjct: 16082 agagcaaaagaaaaggaggaagga 16105
to top
>emb|BX957303.8| Zebrafish DNA sequence from clone DKEYP-116B6 in linkage group 23,
             complete sequence
          Length = 110532

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   gagaggagtttcagagcaaa 608
             ||||||||||||||||||||
Sbjct: 47151 gagaggagtttcagagcaaa 47170
to top
>emb|CR354378.21| Zebrafish DNA sequence from clone CH211-131D10 in linkage group 7,
              complete sequence
          Length = 162741

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    tgaccaaactgaaaacacaa 358
              ||||||||||||||||||||
Sbjct: 128510 tgaccaaactgaaaacacaa 128529
to top
>emb|BX510329.14| Zebrafish DNA sequence from clone RP71-67M5 in linkage group 7,
             complete sequence
          Length = 101941

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   tgaccaaactgaaaacacaa 358
             ||||||||||||||||||||
Sbjct: 16593 tgaccaaactgaaaacacaa 16612
to top
>emb|Z98254.1|DMC114E2 Drosophila melanogaster cosmid 114E2
          Length = 37467

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  aaactgaaaacacaaacaga 363
            ||||||||||||||||||||
Sbjct: 4583 aaactgaaaacacaaacaga 4564
to top
>gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL2) gene, complete cds
          Length = 56373

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   caccatgacatggggatgct 569
             ||||||||||||||||||||
Sbjct: 54725 caccatgacatggggatgct 54706



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   caccatgacatggggatgct 569
             ||||||||||||||||||||
Sbjct: 54591 caccatgacatggggatgct 54572
to top
>emb|AL591376.11| Mouse DNA sequence from clone RP23-404C20 on chromosome 11 Contains the
             5' end of the Nlk gene for nemo like kinase, a laminin
             receptor 1 (ribosomal protein SA) (Lamr1) pseudogene and a
             novel gene, complete sequence
          Length = 141489

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   agtttcagagcaaaggaaaa 614
             ||||||||||||||||||||
Sbjct: 32406 agtttcagagcaaaggaaaa 32425
to top
>emb|BX571833.6| Zebrafish DNA sequence from clone DKEY-287J13, complete sequence
          Length = 198050

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 605   caaaggaaaaggaggaaggacgatagaa 632
             |||||||| ||||||||||| |||||||
Sbjct: 34408 caaaggaacaggaggaaggaggatagaa 34381
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 498     cgttccgggtgctggaggcg 517
               ||||||||||||||||||||
Sbjct: 3522218 cgttccgggtgctggaggcg 3522237
to top
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                        
Query: 236  gagatcccgcttggaagaagaatgcctccgtgaagtagacgaaccgacgtagtcgaacgg 295
            ||||||||||  |||||||||| |  ||| ||||| |||| ||| || ||||||||||| 
Sbjct: 1153 gagatcccgcaaggaagaagaacgagtccatgaagaagacaaacagatgtagtcgaacga 1212

                    
Query: 296  gtcctcac 303
             |||||||
Sbjct: 1213 atcctcac 1220
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 220      acatgcacctgcaactgaga 239
                ||||||||||||||||||||
Sbjct: 11390183 acatgcacctgcaactgaga 11390164
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>gb|AC007248.4| Homo sapiens BAC clone RP11-315O22 from 2, complete sequence
          Length = 201535

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   caccatgacatggggatgct 569
             ||||||||||||||||||||
Sbjct: 12458 caccatgacatggggatgct 12439



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   caccatgacatggggatgct 569
             ||||||||||||||||||||
Sbjct: 12324 caccatgacatggggatgct 12305
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>ref|XM_579426.1| PREDICTED: Rattus norvegicus dynein, cytoplasmic, heavy chain 1
            (Dnch1), mRNA
          Length = 14349

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  gccacgagcttgggcaccat 555
            ||||||||||||||||||||
Sbjct: 6633 gccacgagcttgggcaccat 6614
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>gb|AC026875.4|AC026875 Genomic sequence for Arabidopsis thaliana BAC T6D22 from chromosome I,
             complete sequence
          Length = 120965

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   gctgcaaaaacagggaaaaa 586
             ||||||||||||||||||||
Sbjct: 35485 gctgcaaaaacagggaaaaa 35466
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>dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0591A03
          Length = 147043

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   acatgcacctgcaactgaga 239
             ||||||||||||||||||||
Sbjct: 23871 acatgcacctgcaactgaga 23852
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>gb|AC004858.2|AC004858 Homo sapiens PAC clone RP4-687K1 from 14, complete sequence
          Length = 125202

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 572    aaaaacagggaaaaacagagagga 595
              ||||| ||||||||||||||||||
Sbjct: 114728 aaaaaaagggaaaaacagagagga 114751
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>dbj|AK068014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130K04, full
           insert sequence
          Length = 2337

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 acatgcacctgcaactgaga 239
           ||||||||||||||||||||
Sbjct: 472 acatgcacctgcaactgaga 491
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>emb|AL442663.3|CNS07ECV Human chromosome 14 DNA sequence BAC R-109N23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165423

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 572   aaaaacagggaaaaacagagagga 595
             ||||| ||||||||||||||||||
Sbjct: 17581 aaaaaaagggaaaaacagagagga 17604
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>gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 of 74 of the complete
              sequence
          Length = 203546

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    aaactgaaaacacaaacaga 363
              ||||||||||||||||||||
Sbjct: 138652 aaactgaaaacacaaacaga 138671
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    aactccaaatgaacaatcaa 196
              ||||||||||||||||||||
Sbjct: 403914 aactccaaatgaacaatcaa 403933
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>emb|CR381616.9| Zebrafish DNA sequence from clone CH211-129O18 in linkage group 23,
             complete sequence
          Length = 89029

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 589   gagaggagtttcagagcaaa 608
             ||||||||||||||||||||
Sbjct: 13141 gagaggagtttcagagcaaa 13122
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>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete
             sequence
          Length = 222330

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 606   aaaggaaaaggaggaaggac 625
             ||||||||||||||||||||
Sbjct: 98481 aaaggaaaaggaggaaggac 98462
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>gb|L08505.1|RATDYNEINC Rattus norvegicus cytoplasmic dynein heavy chain (MAP 1C), mRNA,
            complete cds
          Length = 14279

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  gccacgagcttgggcaccat 555
            ||||||||||||||||||||
Sbjct: 6565 gccacgagcttgggcaccat 6546
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>dbj|D13896.1|RATCDHC Rat mRNA for cytoplasmic dynein heavy chain, complete cds
          Length = 15500

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 536  gccacgagcttgggcaccat 555
            ||||||||||||||||||||
Sbjct: 7786 gccacgagcttgggcaccat 7767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,288,479
Number of Sequences: 3902068
Number of extensions: 4288479
Number of successful extensions: 87239
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86962
Number of HSP's gapped (non-prelim): 241
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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