ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1k08 |
|---|---|
| Clone Library Name | barley_pub |
>AXN2_MOUSE (O88566) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like| protein) (Axil) Length = 840 Score = 36.6 bits (83), Expect = 0.029 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Frame = +2 Query: 32 LQAKPALPYYRP-NIPPVHSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEPPSNRPSLA 208 L ++ P P + P SY P L + +L+ PGC P S P Sbjct: 411 LSSRDGAPVQHPLALLPSGSYEEDPQTILDDHLSRVLKTPGCQSPGVGRYSPRSRSPDHH 470 Query: 209 HMYSHNQAKSRPLFTHDHRVPSV*GCPVFNART 307 H + H+Q + L + ++P V CP+ ++ Sbjct: 471 HQHHHHQ-QCHTLLSTGGKLPPVAACPLLGGKS 502
>SOX9_CANFA (Q7YRJ7) Transcription factor SOX-9| Length = 513 Score = 32.0 bits (71), Expect = 0.71 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = +2 Query: 14 QHSPITLQAKP-ALPYYRPNIPPV--HSYNSTPHI*LSSNPGPLLRE---PGCSLLSTDV 175 QHSP + P +LP+Y P+ PP+ Y+ T H N G G SL ST Sbjct: 416 QHSPQQIAYSPFSLPHYSPSYPPITRSQYDYTDH----QNSGSYYSHAAGQGSSLYSTFT 471 Query: 176 SEPPSNRP 199 P+ RP Sbjct: 472 YMNPAQRP 479
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/49 (40%), Positives = 24/49 (48%) Frame = +2 Query: 20 SPITLQAKPALPYYRPNIPPVHSYNSTPHI*LSSNPGPLLREPGCSLLS 166 +PI Q P+ +RP P VH Y S P L PGP P +LLS Sbjct: 1855 APIDSQLHPSSGGFRPGTPSVHQYRSQP---LYLPPGP---APPSALLS 1897
>UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein)| Length = 376 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +2 Query: 113 LSSNPGPLLREPGCSLLSTDVSEPPSNRP----SLAHMYSHNQAKSRPLFTHDHRVPS 274 L+++P ++ GC S+ S PP P + H YSH+Q++S+ H HR S Sbjct: 309 LTASPLHVVSTNGCGPSSSSQSTPPHLHPPSQATQPHHYSHHQSQSQ---QHHHRPQS 363
>SOX9_PONPY (P61754) Transcription factor SOX-9| Length = 509 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +2 Query: 14 QHSPITLQAKPA-LPYYRPNIPPV--HSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEP 184 QHSP + P LP+Y P+ PP+ Y+ T H SS + G L ST Sbjct: 412 QHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQ-GTGLYSTFTYMN 470 Query: 185 PSNRP 199 P+ RP Sbjct: 471 PAQRP 475
>SOX9_PANTR (Q9BG89) Transcription factor SOX-9| Length = 509 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +2 Query: 14 QHSPITLQAKPA-LPYYRPNIPPV--HSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEP 184 QHSP + P LP+Y P+ PP+ Y+ T H SS + G L ST Sbjct: 412 QHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQ-GTGLYSTFTYMN 470 Query: 185 PSNRP 199 P+ RP Sbjct: 471 PAQRP 475
>SOX9_MACMU (P61753) Transcription factor SOX-9| Length = 509 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +2 Query: 14 QHSPITLQAKPA-LPYYRPNIPPV--HSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEP 184 QHSP + P LP+Y P+ PP+ Y+ T H SS + G L ST Sbjct: 412 QHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQ-GTGLYSTFTYMN 470 Query: 185 PSNRP 199 P+ RP Sbjct: 471 PAQRP 475
>SOX9_HUMAN (P48436) Transcription factor SOX-9| Length = 509 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +2 Query: 14 QHSPITLQAKPA-LPYYRPNIPPV--HSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEP 184 QHSP + P LP+Y P+ PP+ Y+ T H SS + G L ST Sbjct: 412 QHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQ-GTGLYSTFTYMN 470 Query: 185 PSNRP 199 P+ RP Sbjct: 471 PAQRP 475
>SOX9_CALJA (Q9BG91) Transcription factor SOX-9| Length = 509 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +2 Query: 14 QHSPITLQAKPA-LPYYRPNIPPV--HSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEP 184 QHSP + P LP+Y P+ PP+ Y+ T H SS + G L ST Sbjct: 412 QHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQ-GTGLYSTFTYMN 470 Query: 185 PSNRP 199 P+ RP Sbjct: 471 PAQRP 475
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 125 PGPLLREPGCSLLSTDVSEPPSNRPSLAH 211 P PL PG S ++ SEPP RP +H Sbjct: 1686 PSPLNAVPGESASGSEPSEPPRRRPPASH 1714 Score = 28.5 bits (62), Expect = 7.9 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = +2 Query: 20 SPITLQAKPALPYYRPNIPPVHSYNSTPHI*LSSNPGPLLREPGCSLLS 166 +PI Q P +RP P +H Y S P L PGP P +LLS Sbjct: 1852 APIDSQLHPNSGGFRPGTPSLHQYRSQP---LYLPPGP---APPSALLS 1894
>CAC1A_DROME (P91645) Voltage-dependent calcium channel type A alpha-1 subunit| (Cacophony protein) (Nightblind A protein) (No-on-transient B protein) (Dmca1A) Length = 1851 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +2 Query: 23 PITLQAKPA-LPYYRPNIPPVHSYNSTPH 106 P TLQ KP + + + N P H+++STPH Sbjct: 1699 PSTLQLKPTNINFPKLNASPTHTHHSTPH 1727
>FP1_MYTCO (Q25434) Adhesive plaque matrix protein precursor (Foot protein 1)| (MCFP1) Length = 872 Score = 28.9 bits (63), Expect = 6.0 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Frame = +2 Query: 23 PITLQAKPALPY---YRPNIPPVH-SYNSTPHI*LSSNPGPLLREPGCSLLST---DVSE 181 P T + KP+ P +P+ PP++ S +S P S P +P + T S Sbjct: 589 PPTYKPKPSYPTPYKQKPSYPPIYKSKSSYPTAYKSKKTYPPTYKPKITYPPTYKPKPSY 648 Query: 182 PPSNRPSLAHMYSHNQAKSRP 244 PPS RP + + ++ KS P Sbjct: 649 PPSYRPKITYPPTYKPKKSYP 669
>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein) Length = 1739 Score = 28.5 bits (62), Expect = 7.9 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Frame = +2 Query: 23 PITLQAKPALPYYRPNIPPVHSYNSTPHI*LSSNPGPLLREPGCSLLSTDVSEPPSNRPS 202 P L PA P PP ++ P L+SNP P L + SL PP++ S Sbjct: 1606 PAHLGRSPAGPPVLHAPPPPNAALPPPPTLLASNPEPALLQSLASLPPNQAFLPPTSAAS 1665 Query: 203 LAHMYSHNQAK--------SRPLFTHDHR 265 L + K +RP FT H+ Sbjct: 1666 LPPANASLSIKLTSLPHKGARPSFTVHHQ 1694
>SOX9_PIG (O18896) Transcription factor SOX-9| Length = 509 Score = 28.5 bits (62), Expect = 7.9 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Frame = +2 Query: 14 QHSPITLQAKPA-LPYYRPNIPPV--HSYNSTPHI*LSSNPGPL---LREPGCSLLSTDV 175 QHSP + P LP+Y P+ PP+ Y+ T H N G R G L ST Sbjct: 412 QHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDH----QNSGSYYSHARSQGSVLYSTFT 467 Query: 176 SEPPSNRP 199 P++ P Sbjct: 468 YMNPAHGP 475 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,865,895 Number of Sequences: 219361 Number of extensions: 1282877 Number of successful extensions: 3012 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3008 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
