>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)|
           (Fragment)
          Length = 461

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
 Frame = -3

Query: 655 RTYRFYTXEVVYGFXYGLSYSKYSYNIVQAPQRISLSHSPVPGLISRKPAYTRRDGLDYV 476
           RTYRFY   VV+ F  GLSY+ +++N+   P  +S+       L S K           V
Sbjct: 296 RTYRFYIGPVVFPFGLGLSYTTFAHNLAHGPTLVSVP------LTSLKATANSTMLSKTV 349

Query: 475 QVEDIASCESLV-FSVHISVANXGAMDGSHAVLLFARSKSSVPGFPLKQLVGFERVYTAA 299
           +V     C +L    VH+ V N G+MDG+H +L+F  S         KQL+GF +++ A 
Sbjct: 350 RVSH-PDCNALSPLDVHVDVKNTGSMDGTHTLLVFT-SPPDGKWASSKQLMGFHKIHIAT 407

Query: 298 GSSKNVAITVDPCKYMSAANTEGRRVLLLGSH 203
           GS K V I V  CK++S  +  G R + LG H
Sbjct: 408 GSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEH 439

>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)|
           (Gentiobiase) (Cellobiase) (Beta-D-glucoside
           glucohydrolase)
          Length = 754

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
 Frame = -3

Query: 649 YRFYTX---EVVYGFXYGLSYSKYSYNIVQAPQRISLSHSPVPGLISRKPAYTRRDGLDY 479
           YR+Y     E ++ F +GLSY+K+ Y+ +                               
Sbjct: 529 YRYYDTKGIEPLFPFGHGLSYTKFEYSDIS------------------------------ 558

Query: 478 VQVEDIASCESLVFSVHISVANXGAMDGSHAVLLFARSKSSVPGFPLKQLVGFERVYTAA 299
           V  +D++  ++ + +V + V N G M G   V L+ +   S    P K+L GFE+V+   
Sbjct: 559 VDKKDVS--DNSIINVSVKVKNVGKMAGKEIVQLYVKDVKSSVRRPEKELKGFEKVFLNP 616

Query: 298 GSSKNVAITVD 266
           G  K V  T+D
Sbjct: 617 GEEKTVTFTLD 627

>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)|
           (Gentiobiase) (Cellobiase) (Beta-D-glucoside
           glucohydrolase) (T-cell inhibitor)
          Length = 765

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 31/120 (25%), Positives = 52/120 (43%)
 Frame = -3

Query: 625 VYGFXYGLSYSKYSYNIVQAPQRISLSHSPVPGLISRKPAYTRRDGLDYVQVEDIASCES 446
           +Y F YGLSY+ ++ +       ++LS SP            +RDG     VE       
Sbjct: 639 LYPFGYGLSYTTFTVS------DVTLS-SPT----------MQRDGKVTASVE------- 674

Query: 445 LVFSVHISVANXGAMDGSHAVLLFARSKSSVPGFPLKQLVGFERVYTAAGSSKNVAITVD 266
                   V N G  +G+  + ++ +  ++    P+KQL GFE++    G  K V+  +D
Sbjct: 675 --------VTNTGKREGATVIQMYLQDVTASMSRPVKQLKGFEKITLKPGERKTVSFPID 726

>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
            (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 845

 Score = 37.0 bits (84), Expect = 0.052
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = -3

Query: 523  ISRKPAYTRRDGLDYVQVE-DIASCESLVFSVHISVANXGAMD---GSHAVLLFARSKSS 356
            + RK A+    GL Y   E DI+  +     + ISV      D   GS  V ++  + +S
Sbjct: 706  LQRKVAFPFGYGLSYTTFELDISDFKVTDDKIDISVDVKNTGDKFAGSEVVQVYFSALNS 765

Query: 355  VPGFPLKQLVGFERVYTAAGSSKNVAITVDPCKYMSAANTE 233
                P+K+L GFE+V+   G  K V I ++    +S  N E
Sbjct: 766  KVSRPVKELKGFEKVHLEPGEKKTVNIELELKDAISYFNEE 806

>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)|
           (Gentiobiase) (Cellobiase) (Beta-D-glucoside
           glucohydrolase)
          Length = 765

 Score = 36.6 bits (83), Expect = 0.068
 Identities = 27/120 (22%), Positives = 51/120 (42%)
 Frame = -3

Query: 625 VYGFXYGLSYSKYSYNIVQAPQRISLSHSPVPGLISRKPAYTRRDGLDYVQVEDIASCES 446
           +Y F YGLSY+ ++ + V+            P +        +RDG              
Sbjct: 639 LYPFGYGLSYTTFTVSDVKLS---------APTM--------KRDGK------------- 668

Query: 445 LVFSVHISVANXGAMDGSHAVLLFARSKSSVPGFPLKQLVGFERVYTAAGSSKNVAITVD 266
              +  + V N G  +G+  V ++ +  ++    P+KQL GFE++    G ++ V+  +D
Sbjct: 669 --VTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPID 726

>GRIPE_MOUSE (Q6GYP7) GTPase-activating RapGAP domain-like 1|
            (GAP-related-interacting partner to E12) (GRIPE)
            (Tuberin-like protein 1)
          Length = 2035

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +2

Query: 119  TAAIEVTHYAARYASMTNSCTSSPTMSMMGSQEQHPSALGVGRAHI 256
            T+++    ++A  A++T S ++SP  S +GS+ Q PS   + RAHI
Sbjct: 967  TSSLNQQAFSAEVATVTGSESASPVHSALGSRSQTPSPSTLSRAHI 1012

>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
 Frame = +1

Query: 349 PERS---------TSILRTVRRHGSRPWHRRWRPRCGQKIP--GTHMMRCLQLGHSPI 489
           PERS         T+  RTV R GS P HR    RC Q+IP   TH      +GH+ +
Sbjct: 56  PERSKTPDKRSAETTQARTVERTGSAPKHRP-EARCRQQIPWDDTHRQCAGSVGHNTL 112

>KDSB_FUSNN (Q8RFA8) 3-deoxy-manno-octulosonate cytidylyltransferase (EC|
           2.7.7.38) (CMP-KDO synthetase)
           (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS)
          Length = 245

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -3

Query: 367 SKSSVPGFPLKQLVG---FERVYTAAGSSK--NVAITVDPCKYMSAANTEGRRVLLLGSH 203
           S + + G PLK + G    E VY  A  S   ++ +  D  +  +     G + ++   +
Sbjct: 12  SSTRLEGKPLKMIEGHTMIEWVYKRAKKSNLDSLIVATDDERIYNEVINFGGQAIMTSKN 71

Query: 202 HTHGRRRSARVCHR 161
           HT+G  R A VC +
Sbjct: 72  HTNGTSRIAEVCEK 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,913,394
Number of Sequences: 219361
Number of extensions: 2111221
Number of successful extensions: 6045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6041
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)