ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1j19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473275.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2313 Score = 184 bits (93), Expect = 2e-43 Identities = 300/368 (81%), Gaps = 1/368 (0%) Strand = Plus / Minus Query: 156 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagtatgatgggatcccagg 215 |||| ||||||| ||||||||| |||||||||| ||||| || | ||| | ||||||| Sbjct: 2311 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaac-atgtgttcccagg 2253 Query: 216 agcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtg 275 | |||||||||| |||| ||||||||||| ||||||| |||||||| || || ||| Sbjct: 2252 aacagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtg 2193 Query: 276 atcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgt 335 ||| |||||| |||| ||||| |||||||||| || |||||||| ||||| |||||| Sbjct: 2192 atctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgt 2133 Query: 336 ttcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctc 395 || | |||| | || |||| ||| | ||||| || ||||||| || |||||||||||| Sbjct: 2132 tttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctc 2073 Query: 396 ccgtccatggcaccgncgttggcgaccgagatgtggacagaaaataccagggactcacat 455 |||||||||||||| |||||| ||||||||||| |||| |||| ||| | ||| ||| Sbjct: 2072 ccgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcat 2013 Query: 456 gatgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttc 515 || || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| Sbjct: 2012 gaggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggcttt 1953 Query: 516 ctactgat 523 || ||||| Sbjct: 1952 ctgctgat 1945
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01, complete sequence Length = 140454 Score = 184 bits (93), Expect = 2e-43 Identities = 300/368 (81%), Gaps = 1/368 (0%) Strand = Plus / Plus Query: 156 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagtatgatgggatcccagg 215 |||| ||||||| ||||||||| |||||||||| ||||| || | ||| | ||||||| Sbjct: 53743 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaac-atgtgttcccagg 53801 Query: 216 agcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtg 275 | |||||||||| |||| ||||||||||| ||||||| |||||||| || || ||| Sbjct: 53802 aacagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtg 53861 Query: 276 atcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgt 335 ||| |||||| |||| ||||| |||||||||| || |||||||| ||||| |||||| Sbjct: 53862 atctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgt 53921 Query: 336 ttcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctc 395 || | |||| | || |||| ||| | ||||| || ||||||| || |||||||||||| Sbjct: 53922 tttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctc 53981 Query: 396 ccgtccatggcaccgncgttggcgaccgagatgtggacagaaaataccagggactcacat 455 |||||||||||||| |||||| ||||||||||| |||| |||| ||| | ||| ||| Sbjct: 53982 ccgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcat 54041 Query: 456 gatgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttc 515 || || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| Sbjct: 54042 gaggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggcttt 54101 Query: 516 ctactgat 523 || ||||| Sbjct: 54102 ctgctgat 54109
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 184 bits (93), Expect = 2e-43 Identities = 300/368 (81%), Gaps = 1/368 (0%) Strand = Plus / Plus Query: 156 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagtatgatgggatcccagg 215 |||| ||||||| ||||||||| |||||||||| ||||| || | ||| | ||||||| Sbjct: 26516856 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaac-atgtgttcccagg 26516914 Query: 216 agcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtg 275 | |||||||||| |||| ||||||||||| ||||||| |||||||| || || ||| Sbjct: 26516915 aacagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtg 26516974 Query: 276 atcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgt 335 ||| |||||| |||| ||||| |||||||||| || |||||||| ||||| |||||| Sbjct: 26516975 atctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgt 26517034 Query: 336 ttcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctc 395 || | |||| | || |||| ||| | ||||| || ||||||| || |||||||||||| Sbjct: 26517035 tttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctc 26517094 Query: 396 ccgtccatggcaccgncgttggcgaccgagatgtggacagaaaataccagggactcacat 455 |||||||||||||| |||||| ||||||||||| |||| |||| ||| | ||| ||| Sbjct: 26517095 ccgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcat 26517154 Query: 456 gatgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttc 515 || || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| Sbjct: 26517155 gaggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggcttt 26517214 Query: 516 ctactgat 523 || ||||| Sbjct: 26517215 ctgctgat 26517222
>dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full insert sequence Length = 2527 Score = 184 bits (93), Expect = 2e-43 Identities = 300/368 (81%), Gaps = 1/368 (0%) Strand = Plus / Minus Query: 156 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagtatgatgggatcccagg 215 |||| ||||||| ||||||||| |||||||||| ||||| || | ||| | ||||||| Sbjct: 2345 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaac-atgtgttcccagg 2287 Query: 216 agcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtg 275 | |||||||||| |||| ||||||||||| ||||||| |||||||| || || ||| Sbjct: 2286 aacagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtg 2227 Query: 276 atcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgt 335 ||| |||||| |||| ||||| |||||||||| || |||||||| ||||| |||||| Sbjct: 2226 atctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgt 2167 Query: 336 ttcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctc 395 || | |||| | || |||| ||| | ||||| || ||||||| || |||||||||||| Sbjct: 2166 tttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctc 2107 Query: 396 ccgtccatggcaccgncgttggcgaccgagatgtggacagaaaataccagggactcacat 455 |||||||||||||| |||||| ||||||||||| |||| |||| ||| | ||| ||| Sbjct: 2106 ccgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcat 2047 Query: 456 gatgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttc 515 || || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| Sbjct: 2046 gaggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggcttt 1987 Query: 516 ctactgat 523 || ||||| Sbjct: 1986 ctgctgat 1979
>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete sequence Length = 40167 Score = 184 bits (93), Expect = 2e-43 Identities = 300/368 (81%), Gaps = 1/368 (0%) Strand = Plus / Plus Query: 156 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagtatgatgggatcccagg 215 |||| ||||||| ||||||||| |||||||||| ||||| || | ||| | ||||||| Sbjct: 15675 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaac-atgtgttcccagg 15733 Query: 216 agcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtg 275 | |||||||||| |||| ||||||||||| ||||||| |||||||| || || ||| Sbjct: 15734 aacagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtg 15793 Query: 276 atcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgt 335 ||| |||||| |||| ||||| |||||||||| || |||||||| ||||| |||||| Sbjct: 15794 atctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgt 15853 Query: 336 ttcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctc 395 || | |||| | || |||| ||| | ||||| || ||||||| || |||||||||||| Sbjct: 15854 tttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctc 15913 Query: 396 ccgtccatggcaccgncgttggcgaccgagatgtggacagaaaataccagggactcacat 455 |||||||||||||| |||||| ||||||||||| |||| |||| ||| | ||| ||| Sbjct: 15914 ccgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcat 15973 Query: 456 gatgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttc 515 || || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| Sbjct: 15974 gaggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggcttt 16033 Query: 516 ctactgat 523 || ||||| Sbjct: 16034 ctgctgat 16041
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 184 bits (93), Expect = 2e-43 Identities = 300/368 (81%), Gaps = 1/368 (0%) Strand = Plus / Plus Query: 156 atgcttcgatgacaaactcgtgcacttcgtctcctaccatgagtatgatgggatcccagg 215 |||| ||||||| ||||||||| |||||||||| ||||| || | ||| | ||||||| Sbjct: 157496 atgcctcgatgagcaactcgtgctcttcgtctcccaccatcagaac-atgtgttcccagg 157554 Query: 216 agcagcacccttctgccctcggtgttggccgcgctcatatatttgcagggatccaccgtg 275 | |||||||||| |||| ||||||||||| ||||||| |||||||| || || ||| Sbjct: 157555 aacagcacccttgtgccttcggtgttggcaaagctcataagcttgcaggggtcgacggtg 157614 Query: 276 atcgccacattttttgaactgccggcggcagtgtagacgcgctcaaaaccaaccagctgt 335 ||| |||||| |||| ||||| |||||||||| || |||||||| ||||| |||||| Sbjct: 157615 atctccacatcggttgatctgccagcggcagtgtgcacacgctcaaagccaactagctgt 157674 Query: 336 ttcagagggaagcccggaacgctcgacttcgatcttgcgaacagtaagacggcatggctc 395 || | |||| | || |||| ||| | ||||| || ||||||| || |||||||||||| Sbjct: 157675 tttataggggatcctggaaagcttggtttcgaactcgcgaacaatagaacggcatggctc 157734 Query: 396 ccgtccatggcaccgncgttggcgaccgagatgtggacagaaaataccagggactcacat 455 |||||||||||||| |||||| ||||||||||| |||| |||| ||| | ||| ||| Sbjct: 157735 ccgtccatggcaccatcgttggaaaccgagatgtgaacaggaaattgcagcgcctcgcat 157794 Query: 456 gatgcgatgtcttcaacttggacatagtccaatccgtccctccgtgtgtatgcaggcttc 515 || || |||||||||||||||||||| || | ||| ||||||| ||||||||||||||| Sbjct: 157795 gaggcaatgtcttcaacttggacataatctactccatccctccttgtgtatgcaggcttt 157854 Query: 516 ctactgat 523 || ||||| Sbjct: 157855 ctgctgat 157862
>gb|AY111407.1| Zea mays CL18707_1 mRNA sequence Length = 364 Score = 60.0 bits (30), Expect = 1e-05 Identities = 105/130 (80%) Strand = Plus / Plus Query: 240 ttggccgcgctcatatatttgcagggatccaccgtgatcgccacattttttgaactgccg 299 ||||| |||||||||| |||||||| || || || ||| ||||| | || |||||| Sbjct: 235 ttggctgcgctcatatgcttgcaggggtcaacagtaatctccacactggatgcactgcca 294 Query: 300 gcggcagtgtagacgcgctcaaaaccaaccagctgtttcagagggaagcccggaacgctc 359 || || |||| ||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 295 gccgccgtgtggacacgctcaaagccaaccagctgttttataggaaagcccgggacgctt 354 Query: 360 gacttcgatc 369 || ||||||| Sbjct: 355 gatttcgatc 364
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 cctggtaccggtgaatgtgac 548 ||||||||||||||||||||| Sbjct: 52561 cctggtaccggtgaatgtgac 52541
>emb|AL096802.11|HSBG13C1 Human DNA sequence from clone GS1-13C1 on chromosome 1q25-31.1 Contains part of a novel gene, complete sequence Length = 75414 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 tcccaggagcagcacccttct 229 ||||||||||||||||||||| Sbjct: 16878 tcccaggagcagcacccttct 16898
>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete sequence Length = 129610 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 528 cctggtaccggtgaatgtgac 548 ||||||||||||||||||||| Sbjct: 90690 cctggtaccggtgaatgtgac 90670
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tcgacttcgatcttgcgaac 377 |||||||||||||||||||| Sbjct: 4135076 tcgacttcgatcttgcgaac 4135057
>gb|AC165445.1| Mus musculus BAC clone RP23-10J16 from chromosome 17, complete sequence Length = 209118 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 cctggtaccggtgaatgtga 547 |||||||||||||||||||| Sbjct: 37369 cctggtaccggtgaatgtga 37388
>dbj|AB220683.1| Pichia pastoris PIK1 gene for phosphatidylinositol 4-kinase, complete cds Length = 3048 Score = 40.1 bits (20), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 55 caatgcaatctttncaacatgactttg 81 ||||||||||||| |||||||| |||| Sbjct: 2006 caatgcaatctttacaacatgaatttg 2032
>gb|AC083826.7| Homo sapiens BAC clone RP11-289C17 from 4, complete sequence Length = 129240 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tatttgcagggatccaccgt 274 |||||||||||||||||||| Sbjct: 127191 tatttgcagggatccaccgt 127210
>gb|AC092168.4| Homo sapiens BAC clone RP11-784K9 from 2, complete sequence Length = 199871 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ctggtaccggtgaatgtgac 548 |||||||||||||||||||| Sbjct: 122630 ctggtaccggtgaatgtgac 122649
>gb|M96635.1|LEINACETYL Leishmania mexicana N-acetylglucosamine-1-phosphate transferase gene, complete cds Length = 4593 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 cgtccctccgtgtgtatgca 509 |||||||||||||||||||| Sbjct: 3430 cgtccctccgtgtgtatgca 3449 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,738,743 Number of Sequences: 3902068 Number of extensions: 3738743 Number of successful extensions: 59105 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59048 Number of HSP's gapped (non-prelim): 57 length of query: 657 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 634 effective length of database: 17,143,297,704 effective search space: 10868850744336 effective search space used: 10868850744336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
