ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd1j16 |
|---|---|
| Clone Library Name | barley_pub |
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 32.3 bits (72), Expect = 1.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + G+PG DG G +GP Sbjct: 1444 IPGPVGEQGLPGSPGPDGPPGPMGP 1468
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 32.3 bits (72), Expect = 1.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + G+PG DG G +GP Sbjct: 1444 IPGPVGEQGLPGSPGPDGPPGPMGP 1468
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 32.3 bits (72), Expect = 1.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + G+PG DG G +GP Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMGP 1466
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 32.3 bits (72), Expect = 1.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + G+PG DG G +GP Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMGP 1466
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 32.3 bits (72), Expect = 1.3 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + GA G+DG G LGP Sbjct: 1410 IPGPVGEQGLPGAAGQDGPPGPLGP 1434
>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 482 Score = 32.3 bits (72), Expect = 1.3 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + GA G+DG G LGP Sbjct: 88 IPGPVGEQGLPGAAGQDGPPGPLGP 112
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)| (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +2 Query: 206 YGDVPLPVGEGDVDGAPGRDGHDGDLGPGRH 298 +G V P GE G PG G G +GPGRH Sbjct: 1053 HGTVRGPPGEKGERGYPGPKGDPGPMGPGRH 1083
>COL14_CAEEL (P18834) Cuticle collagen 14| Length = 345 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +2 Query: 218 PLPVGEGDVDGAPGRDGHDGDLGP 289 P P G+G DGA G DG G++GP Sbjct: 158 PGPAGDGGRDGADGVDGTPGEIGP 181
>HLYS_HYDAT (Q52SK7) Hydralysin| Length = 243 Score = 31.6 bits (70), Expect = 2.2 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = -1 Query: 481 EMSTWDATLELKLGYNSTIR-AGFPKLGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYE 305 + ++W + E + S +GF K G +S++A G ++EK +++ Sbjct: 105 DSTSWSTSAEAGVTMKSEFEVSGFFKTGAEFSVSVTAGKSGS----SSVEKSSTSQIQ-- 158 Query: 304 AAVPPRTKVTVMAIATRSTVDVPFTYWQRDVTIDG 200 VPPR+KVTV + V F + +T+DG Sbjct: 159 VTVPPRSKVTVNMVGIMKKEKVCF---EVPITVDG 190
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + GA G+DG G +GP Sbjct: 1412 IPGPVGEQGLPGAAGQDGPPGPMGP 1436
>RADA_NANEQ (Q74MX9) DNA repair and recombination protein radA| Length = 325 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -1 Query: 406 LGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYEAAVPP 290 LG G + + EFYGEY G+T +V H++ + +PP Sbjct: 100 LGGGIETAALTEFYGEYGSGKT---QVGHQLAVDVQLPP 135
>CTX_PSEAE (P14608) Cytotoxin precursor (Leucocidin)| Length = 286 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = -1 Query: 472 TWDATLELKLGYNSTIRAGFPKLGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYEAAVP 293 TW T +LK+G ++A P +G GA+I+ + E G + K + + + Sbjct: 96 TWSVTEQLKVGVEVKVKANIPLVG-GAEITSTVELSLSSTQGASTSKSSNYGASTKVLIS 154 Query: 292 PRT 284 P + Sbjct: 155 PHS 157
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 215 VPLPVGEGDVDGAPGRDGHDGDLGP 289 +P PVGE + GAPG+ G G LGP Sbjct: 1362 IPGPVGEPGLLGAPGQMGPPGPLGP 1386
>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)| Length = 623 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +2 Query: 218 PLPVGEGDVDGAPGRDGHDGDLGP 289 P P G G PG DGHDG GP Sbjct: 236 PGPPGPPGCQGVPGCDGHDGQKGP 259
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +2 Query: 224 PVGEGDVDGAPGRDGHDGDLGP 289 P GE G PGRDG DG GP Sbjct: 40 PRGERGPPGPPGRDGEDGPTGP 61
>COL8_CAEEL (P18833) Cuticle collagen 8 precursor| Length = 282 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +2 Query: 218 PLPVGEGDVDGAPGRDGHDGDLG-PG 292 P P GEG G PG DG DG G PG Sbjct: 97 PGPPGEGGQSGEPGHDGDDGKPGAPG 122
>AROK_METTH (O26896) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 289 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Frame = -1 Query: 451 LKLGYNSTIRAGFPKLGLGAQISISAEFYGEYNWGQTMEKKV--RHEVEYEAA---VPPR 287 L + +++++AG G A SA FYG ME+++ R +E + +P R Sbjct: 122 LNMAVDASLQAGVSVTG--AYDDASASFYGGLTVTDNMERRIILREPMENQKVLIYMPDR 179 Query: 286 TKVTVMAIATRSTVDVPFTYWQRDVTIDGKVEETLMRDGL 167 +T + R + P+ +DG+V L +G+ Sbjct: 180 KSLTAQSDVPRMKLLAPWVDMAFREVLDGRVHSALTLNGI 219
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 30.0 bits (66), Expect = 6.3 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +2 Query: 224 PVGEGDVDGAPGRDGHDGDLGP 289 P GE G PGRDG DG GP Sbjct: 41 PQGERGPPGPPGRDGEDGPPGP 62
>DAP1_HUMAN (P51397) Death-associated protein 1 (DAP-1)| Length = 102 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = -1 Query: 466 DATLELKLGYNSTIRAGFPKLGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYEAAVPPR 287 + LE K G+ ++AG ++ + G T E+K + + E+E+ PP+ Sbjct: 6 EGKLETKAGHPPAVKAGGMRI-----------VQKHPHTGDTKEEKDKDDQEWESPSPPK 54 Query: 286 TKVTVMAIATRSTVDVP 236 V + + R D P Sbjct: 55 PTVFISGVIARGDKDFP 71
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 230 GEGDVDGAPGRDGHDGDLGP 289 G VDGAPG+DG G GP Sbjct: 591 GSSGVDGAPGKDGPRGPTGP 610
>C1QC_MOUSE (Q02105) Complement C1q subcomponent subunit C precursor| Length = 246 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +2 Query: 230 GEGDVDGAPGRDGHDGDLGP 289 G + GAPG+DGHDG GP Sbjct: 38 GMPGMPGAPGKDGHDGLQGP 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,868,373 Number of Sequences: 219361 Number of extensions: 1091466 Number of successful extensions: 5555 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5476 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
