ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1j14 |
|---|---|
| Clone Library Name | barley_pub |
>ETFD_PIG (P55931) Electron transfer flavoprotein-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) (Fragment) Length = 607 Score = 72.0 bits (175), Expect = 1e-12 Identities = 38/87 (43%), Positives = 51/87 (58%) Frame = -1 Query: 612 ADALIKSGSCTALLYLEPGGIPWIILQSTFSICTSIT*FLVYRSNTNHEHDQPPHLRLRD 433 +D L + CT + Y +P G Q +F + +S+ S TNHEHDQP HL L+D Sbjct: 483 SDQLKPAKDCTPIEYPKPDG------QISFDLLSSVA-----LSGTNHEHDQPAHLTLKD 531 Query: 432 PAVPESINLPQYAGPESRYCPARVYEY 352 +VP + NL Y GPE R+CPA VYE+ Sbjct: 532 DSVPVNRNLSIYDGPEQRFCPAGVYEF 558 Score = 50.4 bits (119), Expect(2) = 8e-09 Identities = 20/26 (76%), Positives = 20/26 (76%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP QNI W VPEGGGGP Y M Sbjct: 582 CDIKDPSQNINWVVPEGGGGPAYNGM 607 Score = 28.9 bits (63), Expect(2) = 8e-09 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 221 YVSDENGDP-KLHINAQNCLHC 159 +V E GD +L INAQNC+HC Sbjct: 558 FVPLEQGDGFRLQINAQNCVHC 579
>ETFD_MOUSE (Q921G7) Electron transfer flavoprotein-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 616 Score = 71.6 bits (174), Expect = 2e-12 Identities = 37/87 (42%), Positives = 51/87 (58%) Frame = -1 Query: 612 ADALIKSGSCTALLYLEPGGIPWIILQSTFSICTSIT*FLVYRSNTNHEHDQPPHLRLRD 433 +D L + CT + Y +P G Q +F + +S+ S TNHEHDQP HL L+D Sbjct: 492 SDQLKPAKDCTPIEYPKPDG------QISFDLLSSVA-----LSGTNHEHDQPAHLTLKD 540 Query: 432 PAVPESINLPQYAGPESRYCPARVYEY 352 ++P + NL Y GPE R+CPA VYE+ Sbjct: 541 DSIPVNRNLSIYDGPEQRFCPAGVYEF 567 Score = 50.4 bits (119), Expect(2) = 8e-09 Identities = 20/26 (76%), Positives = 20/26 (76%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP QNI W VPEGGGGP Y M Sbjct: 591 CDIKDPSQNINWVVPEGGGGPAYNGM 616 Score = 28.9 bits (63), Expect(2) = 8e-09 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 221 YVSDENGDP-KLHINAQNCLHC 159 +V E GD +L INAQNC+HC Sbjct: 567 FVPLEQGDGFRLQINAQNCVHC 588
>ETFD_HUMAN (Q16134) Electron transfer flavoprotein-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 617 Score = 70.9 bits (172), Expect = 3e-12 Identities = 36/78 (46%), Positives = 47/78 (60%) Frame = -1 Query: 585 CTALLYLEPGGIPWIILQSTFSICTSIT*FLVYRSNTNHEHDQPPHLRLRDPAVPESINL 406 CT + Y +P G Q +F + +S+ S TNHEHDQP HL LRD ++P + NL Sbjct: 502 CTPIEYPKPDG------QISFDLLSSVA-----LSGTNHEHDQPAHLTLRDDSIPVNRNL 550 Query: 405 PQYAGPESRYCPARVYEY 352 Y GPE R+CPA VYE+ Sbjct: 551 SIYDGPEQRFCPAGVYEF 568 Score = 50.4 bits (119), Expect(2) = 6e-09 Identities = 20/26 (76%), Positives = 20/26 (76%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP QNI W VPEGGGGP Y M Sbjct: 592 CDIKDPSQNINWVVPEGGGGPAYNGM 617 Score = 29.3 bits (64), Expect(2) = 6e-09 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 221 YVSDENGDP-KLHINAQNCLHC 159 +V E GD +L INAQNC+HC Sbjct: 568 FVPVEQGDGFRLQINAQNCVHC 589
>ETFD_RAT (Q6UPE1) Electron transfer flavoprotein-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 616 Score = 70.1 bits (170), Expect = 5e-12 Identities = 36/87 (41%), Positives = 51/87 (58%) Frame = -1 Query: 612 ADALIKSGSCTALLYLEPGGIPWIILQSTFSICTSIT*FLVYRSNTNHEHDQPPHLRLRD 433 ++ L + CT + Y +P G Q +F + +S+ S TNHEHDQP HL L+D Sbjct: 492 SEQLKPAKDCTPIEYPKPDG------QISFDLLSSVA-----LSGTNHEHDQPAHLTLKD 540 Query: 432 PAVPESINLPQYAGPESRYCPARVYEY 352 ++P + NL Y GPE R+CPA VYE+ Sbjct: 541 DSIPVNRNLSIYDGPEQRFCPAGVYEF 567 Score = 50.4 bits (119), Expect(2) = 8e-09 Identities = 20/26 (76%), Positives = 20/26 (76%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP QNI W VPEGGGGP Y M Sbjct: 591 CDIKDPSQNINWVVPEGGGGPAYNGM 616 Score = 28.9 bits (63), Expect(2) = 8e-09 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -2 Query: 221 YVSDENGDP-KLHINAQNCLHC 159 +V E GD +L INAQNC+HC Sbjct: 567 FVPLEQGDGFRLQINAQNCVHC 588
>ETFD_PSEAE (Q9HZP5) Electron transfer flavoprotein-ubiquinone oxidoreductase| (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 551 Score = 62.8 bits (151), Expect = 8e-10 Identities = 28/46 (60%), Positives = 32/46 (69%) Frame = -1 Query: 492 VYRSNTNHEHDQPPHLRLRDPAVPESINLPQYAGPESRYCPARVYE 355 V+ SNTNHE DQP HL+L D ++P NLP Y P RYCPA VYE Sbjct: 457 VFLSNTNHEEDQPIHLKLADASIPIEKNLPLYDEPAQRYCPAGVYE 502 Score = 44.7 bits (104), Expect(2) = 1e-07 Identities = 18/26 (69%), Positives = 18/26 (69%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP QNI W PEG GGP Y M Sbjct: 526 CDIKDPAQNITWVAPEGTGGPNYPNM 551 Score = 30.8 bits (68), Expect(2) = 1e-07 Identities = 10/20 (50%), Positives = 16/20 (80%) Frame = -2 Query: 218 VSDENGDPKLHINAQNCLHC 159 V++++G + INAQNC+HC Sbjct: 504 VANDDGSKRFQINAQNCVHC 523
>ETFD_CAEEL (Q11190) Probable electron transfer flavoprotein-ubiquinone| oxidoreductase, mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) (Lethal protein 72 Length = 597 Score = 61.6 bits (148), Expect = 2e-09 Identities = 28/59 (47%), Positives = 38/59 (64%) Frame = -1 Query: 528 TFSICTSIT*FLVYRSNTNHEHDQPPHLRLRDPAVPESINLPQYAGPESRYCPARVYEY 352 TF + TS++ + TNH DQP HL L++ VP +NL Y GPE+R+CPA VYE+ Sbjct: 494 TFDLLTSVS-----LTGTNHTEDQPAHLTLKNDQVPLDVNLAVYGGPEARFCPAGVYEF 547 Score = 48.1 bits (113), Expect(2) = 1e-07 Identities = 19/26 (73%), Positives = 20/26 (76%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP+QNI W PEGGGGP Y M Sbjct: 572 CDIKDPQQNINWVTPEGGGGPKYEGM 597 Score = 27.3 bits (59), Expect(2) = 1e-07 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -2 Query: 194 KLHINAQNCLHC 159 +L INAQNC+HC Sbjct: 558 RLQINAQNCIHC 569
>ETFD_ACIAD (P94132) Probable electron transfer flavoprotein-ubiquinone| oxidoreductase (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 570 Score = 60.1 bits (144), Expect = 5e-09 Identities = 25/46 (54%), Positives = 34/46 (73%) Frame = -1 Query: 492 VYRSNTNHEHDQPPHLRLRDPAVPESINLPQYAGPESRYCPARVYE 355 V+ SNT HE +QP HL+L D ++P ++NLP++ P RYCPA VYE Sbjct: 476 VFVSNTVHEENQPSHLKLTDASIPVAVNLPRWDEPAQRYCPAGVYE 521 Score = 48.1 bits (113), Expect(2) = 1e-07 Identities = 19/26 (73%), Positives = 19/26 (73%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTVM 80 CDIKDP QNI W PEGGGGP Y M Sbjct: 545 CDIKDPSQNITWVTPEGGGGPNYPNM 570 Score = 26.9 bits (58), Expect(2) = 1e-07 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 Query: 218 VSDENGDPKLHINAQNCLHC 159 V + G+ + INA NC+HC Sbjct: 523 VDEGEGNKRFQINAANCVHC 542
>ETFD_YEAST (Q08822) Probable electron transfer flavoprotein-ubiquinone| oxidoreductase, mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 631 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = -1 Query: 570 YLEPGGIPWIILQSTFSICTSIT*FLVYRSNTNHEHDQPPHLRL--RDPAVPESINLPQY 397 Y +P G+ +F I TS++ R+ T H+ D+P HLR+ +D + P + Sbjct: 518 YPKPDGV------ISFDILTSVS-----RTGTYHDDDEPCHLRVPGQDMVKYAERSFPVW 566 Query: 396 AGPESRYCPARVYEY 352 G ESR+CPA VYE+ Sbjct: 567 KGVESRFCPAGVYEF 581 Score = 43.5 bits (101), Expect(2) = 2e-06 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTV 83 CDIK P+Q+I W VPEGG GP YT+ Sbjct: 606 CDIKAPRQDITWKVPEGGDGPKYTL 630 Score = 27.3 bits (59), Expect(2) = 2e-06 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -2 Query: 221 YVSDENGD--PKLHINAQNCLHC 159 +V DE +L IN+QNC+HC Sbjct: 581 FVKDEKSPVGTRLQINSQNCIHC 603
>ETFD_SCHPO (P87111) Probable electron transfer flavoprotein-ubiquinone| oxidoreductase, mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 632 Score = 43.1 bits (100), Expect(2) = 8e-06 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = -3 Query: 157 CDIKDPKQNIEWTVPEGGGGPGYTV 83 CDIKDP Q I+W P+GG GP YT+ Sbjct: 607 CDIKDPLQGIQWKTPQGGDGPKYTL 631 Score = 38.5 bits (88), Expect = 0.017 Identities = 24/59 (40%), Positives = 32/59 (54%) Frame = -1 Query: 528 TFSICTSIT*FLVYRSNTNHEHDQPPHLRLRDPAVPESINLPQYAGPESRYCPARVYEY 352 +F I TS++ RS T H +QP HL P +S Y G E+++CPA VYEY Sbjct: 530 SFDIPTSVS-----RSATMHAENQPCHLFDHRPKDRKSC-FETYKGVENKFCPAGVYEY 582 Score = 25.8 bits (55), Expect(2) = 8e-06 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -2 Query: 221 YVSDENGD--PKLHINAQNCLHC 159 YV+DE + IN+QNC+HC Sbjct: 582 YVNDEASSYGKRFVINSQNCVHC 604
>RACA_ENTHI (Q24814) RAS-related protein racA| Length = 196 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 207 EW*PEASHKCSKLPSLLVT*KIRSKTSSGPSRKAEEGLVT 88 +W PE SH C K P LLV K+ + ++ EE +T Sbjct: 96 KWQPEVSHHCPKTPCLLVGTKLDMREDKEQLKRLEEKKIT 135
>CDC42_CAEEL (Q05062) Cell division control protein 42 homolog (CDC42CE)| Length = 191 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 Query: 207 EW*PEASHKCSKLPSLLVT*KIRSKTSSGPSRK 109 +W PE SH CSK P LLV ++ + G K Sbjct: 96 KWVPEISHHCSKTPFLLVGTQVDLRDDPGMLEK 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,454,873 Number of Sequences: 219361 Number of extensions: 2034729 Number of successful extensions: 4745 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4742 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
