ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1j14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197352.1| Oryza sativa (japonica cultivar-group) putative... 165 2e-37
2dbj|AK065934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
3gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 161 3e-36
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
6gb|BT018627.1| Zea mays clone EL01N0502H07.d mRNA sequence 103 7e-19
7gb|AC138089.2| Homo sapiens chromosome 1 clone RP11-407H12, comp... 48 0.036
8gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, compl... 42 2.2
9gb|AC004109.1| Homo sapiens PAC clone RP4-608H12 from 7, complet... 42 2.2
10gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence 42 2.2
11gb|AC002335.3| Arabidopsis thaliana chromosome 2 clone T1O24 map... 42 2.2
12dbj|AK138222.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 42 2.2
13gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map ... 42 2.2
14gb|AC091748.3| Homo sapiens chromosome 15 clone RP11-99L18 map 1... 42 2.2
15gb|AC147291.3| Pan troglodytes BAC clone RP43-74J18 from chromos... 42 2.2
16emb|CR974428.13| Mouse DNA sequence from clone RP23-114O7 on chr... 42 2.2
17dbj|AK114397.1| Ciona intestinalis cDNA, clone:cieg001b01, full ... 42 2.2
18ref|XM_599281.2| PREDICTED: Bos taurus similar to leiomodin 1 (s... 40 8.8
19gb|AE006714.1| Sulfolobus solfataricus P2 section 73 of 272 of t... 40 8.8
20emb|CR627494.10| Zebrafish DNA sequence from clone CH211-48C9 in... 40 8.8
21emb|CR394537.12| Zebrafish DNA sequence from clone CH211-119D19 ... 40 8.8
22emb|CR391937.10| Zebrafish DNA sequence from clone CH211-175G6 i... 40 8.8
23emb|AL389925.10| Human DNA sequence from clone RP11-131O15 on ch... 40 8.8
24emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.8
25emb|AL662785.5| Mouse DNA sequence from clone RP23-186N7 on chro... 40 8.8
26gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, compl... 40 8.8
27emb|BX510936.5| Zebrafish DNA sequence from clone DKEYP-15C6 in ... 40 8.8
28gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 8.8
29gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer... 40 8.8
30gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, comp... 40 8.8
31emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in... 40 8.8
32emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in... 40 8.8
33gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, co... 40 8.8
34dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP... 40 8.8
35gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 8.8
36emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, c... 40 8.8
37gb|AC004465.1|AC004465 Homo sapiens 12q24 PAC RPCI3-363I18 (Rosw... 40 8.8
38dbj|AP006082.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.8

>ref|NM_197352.1| Oryza sativa (japonica cultivar-group) putative electron transfer
            oxidoreductase (OSJNBa0076F20.3), mRNA
          Length = 1653

 Score =  165 bits (83), Expect = 2e-37
 Identities = 125/139 (89%)
 Strand = Plus / Minus

                                                                        
Query: 351  catactcgtaaactcgagctggacaataacgcgactctggtccagcatactgtgggagat 410
            ||||||||||||||||||||||||||||| | |||||||||||||||||| | || ||||
Sbjct: 1465 catactcgtaaactcgagctggacaataatgtgactctggtccagcatacagaggaagat 1406

                                                                        
Query: 411  ttatgctttcaggtactgcaggatccctcaagcggagatgaggaggctggtcatgctcat 470
            |||  || || ||||||| |||||||||||| |||||||||||||| || ||||||||||
Sbjct: 1405 ttactctctccggtactgtaggatccctcaaacggagatgaggaggttgatcatgctcat 1346

                               
Query: 471  ggtttgtgttgctcctgta 489
            |||||||| ||||||||||
Sbjct: 1345 ggtttgtgctgctcctgta 1327



 Score =  113 bits (57), Expect = 7e-22
 Identities = 99/113 (87%), Gaps = 5/113 (4%)
 Strand = Plus / Minus

                                                                        
Query: 102  cctccgccttccgggacggtccactcgatgttttgcttcggatcttttatgtcacaagc- 160
            ||||| ||||| || |||||||| |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1586 cctccaccttctggaacggtccattcgatgttttgctttggatctttgatgtcacaagcc 1527

                                                                 
Query: 161  ----aatgaaggcaattttgagcatttatgtgaagcttcgggtcaccattctc 209
                ||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1526 ttgcaatgaagacaattttgagcatttatgtgaagcttctggtcacctttctc 1474



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>dbj|AK065934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045J15, full
            insert sequence
          Length = 1810

 Score =  165 bits (83), Expect = 2e-37
 Identities = 125/139 (89%)
 Strand = Plus / Minus

                                                                        
Query: 351  catactcgtaaactcgagctggacaataacgcgactctggtccagcatactgtgggagat 410
            ||||||||||||||||||||||||||||| | |||||||||||||||||| | || ||||
Sbjct: 1529 catactcgtaaactcgagctggacaataatgtgactctggtccagcatacagaggaagat 1470

                                                                        
Query: 411  ttatgctttcaggtactgcaggatccctcaagcggagatgaggaggctggtcatgctcat 470
            |||  || || ||||||| |||||||||||| |||||||||||||| || ||||||||||
Sbjct: 1469 ttactctctccggtactgtaggatccctcaaacggagatgaggaggttgatcatgctcat 1410

                               
Query: 471  ggtttgtgttgctcctgta 489
            |||||||| ||||||||||
Sbjct: 1409 ggtttgtgctgctcctgta 1391



 Score =  113 bits (57), Expect = 7e-22
 Identities = 99/113 (87%), Gaps = 5/113 (4%)
 Strand = Plus / Minus

                                                                        
Query: 102  cctccgccttccgggacggtccactcgatgttttgcttcggatcttttatgtcacaagc- 160
            ||||| ||||| || |||||||| |||||||||||||| |||||||| ||||||||||| 
Sbjct: 1650 cctccaccttctggaacggtccattcgatgttttgctttggatctttgatgtcacaagcc 1591

                                                                 
Query: 161  ----aatgaaggcaattttgagcatttatgtgaagcttcgggtcaccattctc 209
                ||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1590 ttgcaatgaagacaattttgagcatttatgtgaagcttctggtcacctttctc 1538



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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score =  161 bits (81), Expect = 3e-36
 Identities = 123/137 (89%)
 Strand = Plus / Minus

                                                                         
Query: 353   tactcgtaaactcgagctggacaataacgcgactctggtccagcatactgtgggagattt 412
             ||||||||||||||||||||||||||| | |||||||||||||||||| | || ||||||
Sbjct: 22035 tactcgtaaactcgagctggacaataatgtgactctggtccagcatacagaggaagattt 21976

                                                                         
Query: 413   atgctttcaggtactgcaggatccctcaagcggagatgaggaggctggtcatgctcatgg 472
             |  || || ||||||| |||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 21975 actctctccggtactgtaggatccctcaaacggagatgaggaggttgatcatgctcatgg 21916

                              
Query: 473   tttgtgttgctcctgta 489
             |||||| ||||||||||
Sbjct: 21915 tttgtgctgctcctgta 21899



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 159   gcaatgaaggcaattttgagcatttatgtgaagcttcgggtcaccattctc 209
             ||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 22203 gcaatgaagacaattttgagcatttatgtgaagcttctggtcacctttctc 22153



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 102   cctccgccttccgggacggtccactcgatgttttgcttcggatcttttatgtcacaagc 160
             ||||| ||||| || |||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 22353 cctccaccttctggaacggtccattcgatgttttgctttggatctttgatgtcacaagc 22295



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  161 bits (81), Expect = 3e-36
 Identities = 123/137 (89%)
 Strand = Plus / Minus

                                                                            
Query: 353      tactcgtaaactcgagctggacaataacgcgactctggtccagcatactgtgggagattt 412
                ||||||||||||||||||||||||||| | |||||||||||||||||| | || ||||||
Sbjct: 19394169 tactcgtaaactcgagctggacaataatgtgactctggtccagcatacagaggaagattt 19394110

                                                                            
Query: 413      atgctttcaggtactgcaggatccctcaagcggagatgaggaggctggtcatgctcatgg 472
                |  || || ||||||| |||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 19394109 actctctccggtactgtaggatccctcaaacggagatgaggaggttgatcatgctcatgg 19394050

                                 
Query: 473      tttgtgttgctcctgta 489
                |||||| ||||||||||
Sbjct: 19394049 tttgtgctgctcctgta 19394033



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 159      gcaatgaaggcaattttgagcatttatgtgaagcttcgggtcaccattctc 209
                ||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 19394337 gcaatgaagacaattttgagcatttatgtgaagcttctggtcacctttctc 19394287



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 102      cctccgccttccgggacggtccactcgatgttttgcttcggatcttttatgtcacaagc 160
                ||||| ||||| || |||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 19394487 cctccaccttctggaacggtccattcgatgttttgctttggatctttgatgtcacaagc 19394429



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  161 bits (81), Expect = 3e-36
 Identities = 123/137 (89%)
 Strand = Plus / Minus

                                                                            
Query: 353      tactcgtaaactcgagctggacaataacgcgactctggtccagcatactgtgggagattt 412
                ||||||||||||||||||||||||||| | |||||||||||||||||| | || ||||||
Sbjct: 19405445 tactcgtaaactcgagctggacaataatgtgactctggtccagcatacagaggaagattt 19405386

                                                                            
Query: 413      atgctttcaggtactgcaggatccctcaagcggagatgaggaggctggtcatgctcatgg 472
                |  || || ||||||| |||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 19405385 actctctccggtactgtaggatccctcaaacggagatgaggaggttgatcatgctcatgg 19405326

                                 
Query: 473      tttgtgttgctcctgta 489
                |||||| ||||||||||
Sbjct: 19405325 tttgtgctgctcctgta 19405309



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 159      gcaatgaaggcaattttgagcatttatgtgaagcttcgggtcaccattctc 209
                ||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 19405613 gcaatgaagacaattttgagcatttatgtgaagcttctggtcacctttctc 19405563



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 102      cctccgccttccgggacggtccactcgatgttttgcttcggatcttttatgtcacaagc 160
                ||||| ||||| || |||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 19405763 cctccaccttctggaacggtccattcgatgttttgctttggatctttgatgtcacaagc 19405705



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>gb|BT018627.1| Zea mays clone EL01N0502H07.d mRNA sequence
          Length = 2139

 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                       
Query: 422 ggtactgcaggatccctcaagcggagatgaggaggctggtcatgctcatggtttgtgttg 481
           ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 492 ggtactgtaggatccctcaagcggagatgaggcggctgatcatgctcatggtttgtattg 551

                   
Query: 482 ctcctgta 489
           ||||||||
Sbjct: 552 ctcctgta 559



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 113/134 (84%), Gaps = 5/134 (3%)
 Strand = Plus / Plus

                                                                       
Query: 87  gtgtaaccaggccctcctccgccttccgggacggtccactcgatgttttgcttcggatct 146
           ||||||||||| || ||||| ||||| || || |||||||||||||| ||||| ||||||
Sbjct: 285 gtgtaaccagggccacctccaccttctggaactgtccactcgatgttctgctttggatct 344

                                                                       
Query: 147 tttatgtcacaa-----gcaatgaaggcaattttgagcatttatgtgaagcttcgggtca 201
           || ||||| |||     ||||||||| ||||| || |||||||| |||||||| ||||||
Sbjct: 345 ttgatgtcgcaagccttgcaatgaagacaattctgtgcatttatatgaagctttgggtca 404

                         
Query: 202 ccattctcatcaga 215
           || |||||||||||
Sbjct: 405 cctttctcatcaga 418



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>gb|AC138089.2| Homo sapiens chromosome 1 clone RP11-407H12, complete sequence
          Length = 174987

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 167   ggcaattttgagcatttatgtgaagctt 194
             |||||| |||||||||||||||||||||
Sbjct: 22622 ggcaatattgagcatttatgtgaagctt 22595



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>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence
          Length = 176187

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      acaattatttacaccattatt 21
              |||||||||||||||||||||
Sbjct: 158281 acaattatttacaccattatt 158261



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>gb|AC004109.1| Homo sapiens PAC clone RP4-608H12 from 7, complete sequence
          Length = 69201

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     acaattatttacaccattatt 21
             |||||||||||||||||||||
Sbjct: 30779 acaattatttacaccattatt 30759



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>gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence
          Length = 257036

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    aatcagcaacttctgctttgg 271
              |||||||||||||||||||||
Sbjct: 168971 aatcagcaacttctgctttgg 168951



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>gb|AC002335.3| Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete
             sequence
          Length = 102057

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 353   tactcgtaaactcgagctggacaataacgcgactctggtccagcatact 401
             ||||||||||| || ||||| || ||||| ||||||||  |||||||||
Sbjct: 39567 tactcgtaaacacgggctgggcagtaacgtgactctggcgcagcatact 39519



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>dbj|AK138222.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230038M12 product:unclassifiable, full
            insert sequence
          Length = 6403

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 251  aatcagcaacttctgctttgg 271
            |||||||||||||||||||||
Sbjct: 1447 aatcagcaacttctgctttgg 1467



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>gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map 15q21.3, complete
             sequence
          Length = 157533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 460   gtcatgctcatggtttgtgtt 480
             |||||||||||||||||||||
Sbjct: 89836 gtcatgctcatggtttgtgtt 89816



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>gb|AC091748.3| Homo sapiens chromosome 15 clone RP11-99L18 map 15q21.3, complete
             sequence
          Length = 150294

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 460   gtcatgctcatggtttgtgtt 480
             |||||||||||||||||||||
Sbjct: 61515 gtcatgctcatggtttgtgtt 61495



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>gb|AC147291.3| Pan troglodytes BAC clone RP43-74J18 from chromosome 7, complete
             sequence
          Length = 219031

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     acaattatttacaccattatt 21
             |||||||||||||||||||||
Sbjct: 27477 acaattatttacaccattatt 27457



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>emb|CR974428.13| Mouse DNA sequence from clone RP23-114O7 on chromosome 12, complete
              sequence
          Length = 197806

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 251    aatcagcaacttctgctttgg 271
              |||||||||||||||||||||
Sbjct: 153917 aatcagcaacttctgctttgg 153937



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>dbj|AK114397.1| Ciona intestinalis cDNA, clone:cieg001b01, full insert sequence
          Length = 2181

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 445  gagatgaggaggctggtcatgctcatggtttgt 477
            ||||||||  ||||||||||| |||||||||||
Sbjct: 1656 gagatgagctggctggtcatgttcatggtttgt 1624



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>ref|XM_599281.2| PREDICTED: Bos taurus similar to leiomodin 1 (smooth muscle)
            (LOC521024), mRNA
          Length = 1647

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 451  aggaggctggtcatgctcat 470
            ||||||||||||||||||||
Sbjct: 1103 aggaggctggtcatgctcat 1084



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>gb|AE006714.1| Sulfolobus solfataricus P2 section 73 of 272 of the complete genome
          Length = 11888

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  aggatccctcaagcggagat 449
            ||||||||||||||||||||
Sbjct: 7314 aggatccctcaagcggagat 7295



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>emb|CR627494.10| Zebrafish DNA sequence from clone CH211-48C9 in linkage group 17,
             complete sequence
          Length = 121177

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     attatttacaccattattat 23
             ||||||||||||||||||||
Sbjct: 66618 attatttacaccattattat 66637



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>emb|CR394537.12| Zebrafish DNA sequence from clone CH211-119D19 in linkage group 16,
             complete sequence
          Length = 168543

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   ggcacattttattgcacgtt 302
             ||||||||||||||||||||
Sbjct: 24959 ggcacattttattgcacgtt 24978



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>emb|CR391937.10| Zebrafish DNA sequence from clone CH211-175G6 in linkage group 16,
              complete sequence
          Length = 224481

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aatgaaggcaattttgagca 180
              ||||||||||||||||||||
Sbjct: 205115 aatgaaggcaattttgagca 205134



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>emb|AL389925.10| Human DNA sequence from clone RP11-131O15 on chromosome 1 Contains the
             3' end of the gene for interleukin-23 receptor (IL23R), a
             DnaJ (Hsp40) homolog subfamily B member 6 (DNAJB6)
             pseudogene and the 5' end of the gene for interleukin 12
             receptor, beta 2 (IL12RB2), complete sequence
          Length = 122289

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   atggtatccccccaggttca 565
             ||||||||||||||||||||
Sbjct: 39676 atggtatccccccaggttca 39657



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>emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3
          Length = 91303

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   accattctcatcagatacat 220
             ||||||||||||||||||||
Sbjct: 49496 accattctcatcagatacat 49477



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>emb|AL662785.5| Mouse DNA sequence from clone RP23-186N7 on chromosome 11, complete
             sequence
          Length = 158968

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   gggagaaaatggtagttcaa 334
             ||||||||||||||||||||
Sbjct: 36577 gggagaaaatggtagttcaa 36596



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>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence
          Length = 187127

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     atttctctactaatattcacatca 84
              |||| |||||||||||||||||||
Sbjct: 124875 atttgtctactaatattcacatca 124852



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>emb|BX510936.5| Zebrafish DNA sequence from clone DKEYP-15C6 in linkage group 21,
             complete sequence
          Length = 146287

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   aatgaaggcaattttgagca 180
             ||||||||||||||||||||
Sbjct: 35671 aatgaaggcaattttgagca 35652



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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   acaacagaaatggtcagcag 249
             ||||||||||||||||||||
Sbjct: 28666 acaacagaaatggtcagcag 28647



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>gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 107650

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   caattttgagcatttatgtg 188
             ||||||||||||||||||||
Sbjct: 37671 caattttgagcatttatgtg 37652



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>gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, complete sequence
          Length = 136961

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     atttctctactaatattcacatca 84
              |||| |||||||||||||||||||
Sbjct: 124314 atttgtctactaatattcacatca 124337



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>emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in linkage group 20,
              complete sequence
          Length = 165014

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    aatgaaggcaattttgagca 180
              ||||||||||||||||||||
Sbjct: 138516 aatgaaggcaattttgagca 138497



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>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20,
              complete sequence
          Length = 217957

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aatgaaggcaattttgagca 180
              ||||||||||||||||||||
Sbjct: 111046 aatgaaggcaattttgagca 111065



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>gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, complete sequence
          Length = 157784

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   gggtcaccattctcatcaga 215
             ||||||||||||||||||||
Sbjct: 96541 gggtcaccattctcatcaga 96560



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>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete
             sequence
          Length = 176082

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    atttctctactaatattcacatca 84
             |||| |||||||||||||||||||
Sbjct: 94303 atttgtctactaatattcacatca 94280



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>gb|AC092203.16| Mus musculus strain C57BL/6J chromosome 3 clone rp23-422n18, complete
             sequence
          Length = 188880

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     attatttacaccattattat 23
             ||||||||||||||||||||
Sbjct: 41781 attatttacaccattattat 41800



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>emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, complete sequence
          Length = 231581

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    aatgaaggcaattttgagca 180
              ||||||||||||||||||||
Sbjct: 145312 aatgaaggcaattttgagca 145293



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    aatgaaggcaattttgagca 180
              ||||||||||||||||||||
Sbjct: 144513 aatgaaggcaattttgagca 144494



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>gb|AC004465.1|AC004465 Homo sapiens 12q24 PAC RPCI3-363I18 (Roswell Park Cancer Institute
            Human PAC library) complete sequence
          Length = 102750

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  aagtgatagaagtacagatt 520
            ||||||||||||||||||||
Sbjct: 1084 aagtgatagaagtacagatt 1065



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>dbj|AP006082.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT31E04, TM0126,
             complete sequence
          Length = 104729

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tcaccattctcatcagatac 218
             ||||||||||||||||||||
Sbjct: 29042 tcaccattctcatcagatac 29023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,702,149
Number of Sequences: 3902068
Number of extensions: 5702149
Number of successful extensions: 101793
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101619
Number of HSP's gapped (non-prelim): 171
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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