>gb|BT016843.1| Zea mays clone Contig676 mRNA sequence
          Length = 941

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                       
Query: 272 gaattcggcggcgtgatgccttgatccaagtnatacttcttctcggcatcggccagcctt 331
           |||||||| ||||||||||||   ||||||| |||   |||||| ||||| |||||||||
Sbjct: 365 gaattcgggggcgtgatgcctctctccaagtaataagccttctctgcatcagccagcctt 424

                                                                       
Query: 332 gcctgnaatatcccccattctttactacaccgccctcttaccccttcccatgaagctctt 391
           | ||| ||||||||||||||||| || || ||  ||||||||||||||||||  ||||||
Sbjct: 425 gtctgaaatatcccccattcttttctgcagcgtgctcttaccccttcccatggtgctctt 484

             
Query: 392 cc 393
           ||
Sbjct: 485 cc 486

>gb|BT018254.1| Zea mays clone EL01T0201D03.c mRNA sequence
          Length = 780

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 gaattcggcggcgtgatgccttgatccaagtnatacttcttctcggcatcggccagcctt 331
           |||||||| ||||||||||||   ||||||| |||   |||||| ||||| |||||||||
Sbjct: 500 gaattcgggggcgtgatgcctctctccaagtaataagccttctctgcatcagccagcctt 441

                                                                       
Query: 332 gcctgnaatatcccccattctttactacaccgccctcttaccccttcccatgaagctctt 391
           | ||| ||||||||||||||||| || ||  |  ||||||||||||||||||  ||||||
Sbjct: 440 gtctgaaatatcccccattcttttctgcagagtgctcttaccccttcccatggggctctt 381

             
Query: 392 cc 393
           ||
Sbjct: 380 cc 379

>gb|AY104430.1| Zea mays PCO074111 mRNA sequence
          Length = 537

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                       
Query: 275 ttcggcggcgtgatgccttgatccaagtnatacttcttctcggcatcggccagccttgcc 334
           ||||| || ||||||||| | ||||||| |||   |||||| ||||| |||||||||| |
Sbjct: 529 ttcgggggtgtgatgcctcgctccaagtaataagccttctccgcatcagccagccttgtc 470

                                                            
Query: 335 tgnaatatcccccattctttactacaccgccctcttaccccttcccatg 383
           || ||||||||||||||||| || || ||  ||||||||||||||||||
Sbjct: 469 tgaaatatcccccattcttttctgcagcgtgctcttaccccttcccatg 421

>ref|XM_465088.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1925

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
            ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 1500 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 1441

                          
Query: 370  taccccttcccatg 383
            ||||||||||||||
Sbjct: 1440 taccccttcccatg 1427

>ref|XM_507466.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1654_A02.17 mRNA
          Length = 2008

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
            ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 1537 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 1478

                          
Query: 370  taccccttcccatg 383
            ||||||||||||||
Sbjct: 1477 taccccttcccatg 1464

>ref|XM_506776.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1654_A02.17 mRNA
          Length = 2061

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
            ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 1557 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 1498

                          
Query: 370  taccccttcccatg 383
            ||||||||||||||
Sbjct: 1497 taccccttcccatg 1484

>dbj|AK122023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P12, full
            insert sequence
          Length = 2060

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
            ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 1556 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 1497

                          
Query: 370  taccccttcccatg 383
            ||||||||||||||
Sbjct: 1496 taccccttcccatg 1483

>dbj|AK101533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C01, full
            insert sequence
          Length = 1924

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
            ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 1499 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 1440

                          
Query: 370  taccccttcccatg 383
            ||||||||||||||
Sbjct: 1439 taccccttcccatg 1426

>dbj|AK064947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P17, full
            insert sequence
          Length = 2008

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
            ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 1537 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 1478

                          
Query: 370  taccccttcccatg 383
            ||||||||||||||
Sbjct: 1477 taccccttcccatg 1464

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 310      cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
                ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 11402637 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 11402578

                    
Query: 370      tacc 373
                ||||
Sbjct: 11402577 tacc 11402574

>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1654_A02
          Length = 128520

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 310   cttctcggcatcggccagccttgcctgnaatatcccccattctttactacaccgccctct 369
             ||||||||||||||||||||| |  || |||||| |||||||||| ||||| ||  ||||
Sbjct: 72109 cttctcggcatcggccagcctcgtttgaaatatctcccattctttcctacagcgtgctct 72050

                 
Query: 370   tacc 373
             ||||
Sbjct: 72049 tacc 72046

>ref|XM_463604.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 341  atcccccattctttactacaccgccctcttaccccttcccatg 383
            |||||||||||||| ||||| ||  |||| |||||||||||||
Sbjct: 1127 atcccccattcttttctacagcgagctctcaccccttcccatg 1085

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    ctgaagtcgaattcggcggcg 284
              |||||||||||||||||||||
Sbjct: 154800 ctgaagtcgaattcggcggcg 154820

>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    cttaccccttcccatgaagc 387
              ||||||||||||||||||||
Sbjct: 156974 cttaccccttcccatgaagc 156993

>gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chromosome unknown,
             complete sequence
          Length = 220527

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gtacacaagtctgattatta 65
             ||||||||||||||||||||
Sbjct: 58492 gtacacaagtctgattatta 58473

>emb|AL078461.38|HSDJ901O8 Human DNA sequence from clone RP5-901O8 on chromosome 20q11.1-11.23
             Contains part of the C20orf104 gene, the COX7BP2 gene for
             cytochrome c oxidase VIIb subunit pseudogene 2 and a
             hypoxia inducible protein 1 (HIG1) pseudogene, complete
             sequence
          Length = 99876

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gtacacaagtctgattatta 65
             ||||||||||||||||||||
Sbjct: 71497 gtacacaagtctgattatta 71516

>gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosome 10, complete sequence
          Length = 196603

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ccctcttaccccttcccatg 383
              ||||||||||||||||||||
Sbjct: 158284 ccctcttaccccttcccatg 158265

>emb|AL671863.6| Mouse DNA sequence from clone RP23-88N4 on chromosome 11, complete
             sequence
          Length = 108660

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   aatatcccccattctttact 357
             ||||||||||||||||||||
Sbjct: 43805 aatatcccccattctttact 43786

>gb|AC011463.7| Homo sapiens chromosome 19 clone CTC-442E9, complete sequence
          Length = 101944

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   ttcagctatactagtaggca 169
             ||||||||||||||||||||
Sbjct: 66231 ttcagctatactagtaggca 66212

>gb|AC007759.1|AC007759 Homo sapiens chromosome 19, cosmid R27714, complete sequence
          Length = 40331

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 55    tctgattattagcatgcgcctcactctg 82
             ||||||||||||||||| ||||| ||||
Sbjct: 17132 tctgattattagcatgcccctcaatctg 17105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,419,849
Number of Sequences: 3902068
Number of extensions: 2419849
Number of successful extensions: 33255
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33196
Number of HSP's gapped (non-prelim): 58
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)