>emb|AJ517314.2|CIN517314 Ciona intestinalis complete mitochondrial genome
          Length = 14790

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 3    tttctaatgatcgcanataaaatataaggatctttcttaat 43
            |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 8654 tttctaataatcttatataaaatataaggatctttcttaat 8614

>dbj|AK175043.1| Ciona intestinalis cDNA, clone:cixxx00090, full insert sequence
          Length = 1097

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 843 tttctaataatcttatataaaatataaggatctttcttaat 803

>dbj|AK175041.1| Ciona intestinalis cDNA, clone:cixxx00088, full insert sequence
          Length = 1097

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 843 tttctaataatcttatataaaatataaggatctttcttaat 803

>dbj|AK175038.1| Ciona intestinalis cDNA, clone:cixxx00085, full insert sequence
          Length = 1094

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 840 tttctaataatcttatataaaatataaggatctttcttaat 800

>dbj|AK175034.1| Ciona intestinalis cDNA, clone:cixxx00079, full insert sequence
          Length = 1075

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 821 tttctaataatcttatataaaatataaggatctttcttaat 781

>dbj|AK175031.1| Ciona intestinalis cDNA, clone:cixxx00074, full insert sequence
          Length = 999

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 746 tttctaataatcttatataaaatataaggatctttcttaat 706

>dbj|AK175030.1| Ciona intestinalis cDNA, clone:cixxx00072, full insert sequence
          Length = 1057

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 815 tttctaataatcttatataaaatataaggatctttcttaat 775

>dbj|AK175029.1| Ciona intestinalis cDNA, clone:cixxx00071, full insert sequence
          Length = 1106

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 851 tttctaataatcttatataaaatataaggatctttcttaat 811

>dbj|AK175028.1| Ciona intestinalis cDNA, clone:cixxx00070, full insert sequence
          Length = 1990

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 263 tttctaataatcttatataaaatataaggatctttcttaat 303

>dbj|AK175026.1| Ciona intestinalis cDNA, clone:cixxx00068, full insert sequence
          Length = 871

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 563 tttctaataatcttatataaaatataaggatctttcttaat 523

>dbj|AK175025.1| Ciona intestinalis cDNA, clone:cixxx00067, full insert sequence
          Length = 1012

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 758 tttctaataatcttatataaaatataaggatctttcttaat 718

>dbj|AK173955.1| Ciona intestinalis cDNA, clone:cixxx00035, full insert sequence
          Length = 1067

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 823 tttctaataatcttatataaaatataaggatctttcttaat 783

>dbj|AK173954.1| Ciona intestinalis cDNA, clone:cixxx00034, full insert sequence
          Length = 909

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 667 tttctaataatcttatataaaatataaggatctttcttaat 627

>dbj|AK173953.1| Ciona intestinalis cDNA, clone:cixxx00033, full insert sequence
          Length = 1082

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 839 tttctaataatcttatataaaatataaggatctttcttaat 799

>dbj|AK116382.1| Ciona intestinalis cDNA, clone:cixxx00010, full insert sequence
          Length = 1004

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 752 tttctaataatcttatataaaatataaggatctttcttaat 712

>dbj|AK115943.1| Ciona intestinalis cDNA, clone:citb001e24, full insert sequence
          Length = 793

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 520 tttctaataatcttatataaaatataaggatctttcttaat 480

>dbj|AK112880.1| Ciona intestinalis cDNA, clone:cixxx00021, full insert sequence
          Length = 1095

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 840 tttctaataatcttatataaaatataaggatctttcttaat 800

>dbj|AK112582.1| Ciona intestinalis cDNA, clone:cicl061i12, full insert sequence
          Length = 1092

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 3   tttctaatgatcgcanataaaatataaggatctttcttaat 43
           |||||||| |||  | |||||||||||||||||||||||||
Sbjct: 838 tttctaataatcttatataaaatataaggatctttcttaat 798

>gb|AC093155.2| Homo sapiens chromosome 1 clone RP11-384B12, complete sequence
          Length = 189760

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 15    gcanataaaatataaggatctttctt 40
             ||| ||||||| ||||||||||||||
Sbjct: 30925 gcagataaaatctaaggatctttctt 30950

>gb|AC159198.2| Mus musculus BAC clone RP23-388C15 from chromosome 12, complete
             sequence
          Length = 213311

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    ataaaatataaggatcttt 37
             |||||||||||||||||||
Sbjct: 97914 ataaaatataaggatcttt 97932

>gb|AY601891.1| Calophya schini cytochrome b (cytB) gene, partial cds; tRNA-Ser
           gene, complete sequence; NADH dehydrogenase subunit 1
           (nd1) gene, complete cds; and tRNA-Leu, large subunit
           ribosomal RNA, tRNA-Val, and small subunit ribosomal RNA
           genes, complete sequence; mitochondrial
          Length = 3044

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 19  ataaaatataaggatctt 36
           ||||||||||||||||||
Sbjct: 620 ataaaatataaggatctt 603

>gb|AC122536.4| Mus musculus BAC clone RP24-542K22 from chromosome 17, complete
             sequence
          Length = 150022

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 22    aaatataaggatctttcttaat 43
             |||| |||||||||||||||||
Sbjct: 89956 aaatctaaggatctttcttaat 89935

>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    tataaggatctttcttaa 42
             ||||||||||||||||||
Sbjct: 81745 tataaggatctttcttaa 81762

>gb|AC115631.4| Mus musculus BAC clone RP24-128K6 from 18, complete sequence
          Length = 179355

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    ataaaatataaggatctt 36
             ||||||||||||||||||
Sbjct: 78606 ataaaatataaggatctt 78623

>gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence
          Length = 261093

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    ataaaatataaggatctt 36
             ||||||||||||||||||
Sbjct: 68005 ataaaatataaggatctt 68022

>emb|BX538266.1|HSM806514 Homo sapiens genomic DNA; cDNA DKFZp686P0190 (from clone
            DKFZp686P0190)
          Length = 7479

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 22   aaatataaggatctttct 39
            ||||||||||||||||||
Sbjct: 7281 aaatataaggatctttct 7298

>gb|AC026671.18| Homo sapiens 3 BAC RP11-91M9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 141674

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    aaatataaggatctttct 39
             ||||||||||||||||||
Sbjct: 19084 aaatataaggatctttct 19067

>gb|AC022721.9| Homo sapiens, clone RP11-191H13, complete sequence
          Length = 164354

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 22    aaatataaggatctttcttaat 43
             ||||||| ||||||||||||||
Sbjct: 96244 aaatatagggatctttcttaat 96223

>gb|AC008949.9| Homo sapiens chromosome 5 clone CTD-2335O24, complete sequence
          Length = 163731

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     aaaatataaggatctttc 38
              ||||||||||||||||||
Sbjct: 159854 aaaatataaggatctttc 159871

>gb|AC034240.5| Homo sapiens chromosome 5 clone CTD-2335C11, complete sequence
          Length = 121245

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    aaaatataaggatctttc 38
             ||||||||||||||||||
Sbjct: 40143 aaaatataaggatctttc 40160

>gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone RP23-181H5, complete sequence
          Length = 220811

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    ataaaatataaggatctt 36
             ||||||||||||||||||
Sbjct: 67377 ataaaatataaggatctt 67394

>gb|AC153599.6| Mus musculus 6 BAC RP23-227G6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 203926

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                      
Query: 3     tttctaatgatcgcanataaaatat 27
             ||||||||||| ||| |||||||||
Sbjct: 50778 tttctaatgattgcacataaaatat 50802

>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     ataaaatataaggatctt 36
              ||||||||||||||||||
Sbjct: 422666 ataaaatataaggatctt 422683

>emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chromosome 4, complete
              sequence
          Length = 226546

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 20     taaaatataaggatcttt 37
              ||||||||||||||||||
Sbjct: 212429 taaaatataaggatcttt 212446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 388,649
Number of Sequences: 3902068
Number of extensions: 388649
Number of successful extensions: 76485
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76416
Number of HSP's gapped (non-prelim): 69
length of query: 56
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 36
effective length of database: 17,155,003,908
effective search space: 617580140688
effective search space used: 617580140688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)