>IFI5_MOUSE (Q08619) Interferon-activable protein 205 (IFI-205) (D3 protein)|
          Length = 425

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 150 HNVNTKQKCCMIWDCLYLRKDKGLVKLVN*VLIYNRMVNSKQHFKWSSFFCN*LSFISLS 329
           HN+N K+   +   C +L++++G  KLV                      C   SF+ ++
Sbjct: 376 HNINCKEGDKLHLFCFHLKRERGQPKLV----------------------CGDHSFVKVT 413

Query: 330 PAGKKK 347
            AGKKK
Sbjct: 414 KAGKKK 419

>VMD2_MOUSE (O88870) Bestrophin-1 (Vitelliform macular dystrophy protein 2|
           homolog)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 218 PLIFT*VQTVPYHATFLLCIYVVNQGGPEKSYKGN 114
           PL++T V TV  ++ FL C+       P K Y G+
Sbjct: 233 PLVYTQVVTVAVYSFFLACLIGKQFLNPNKDYPGH 267

>YMV8_YEAST (Q04749) Hypothetical 47.1 kDa protein in NCA1-HMS1 intergenic|
           region
          Length = 426

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = -1

Query: 185 YHATFLLCIYVVNQGGPE----KSYKGN 114
           YH  +L+C+Y++  G  +    K++KGN
Sbjct: 49  YHGRYLICVYLIQLGHDKHELIKTFKGN 76

>VMD2_PIG (Q8WMR7) Bestrophin-1 (Vitelliform macular dystrophy protein 2|
           homolog) (Fragment)
          Length = 428

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 218 PLIFT*VQTVPYHATFLLCIYVVNQGGPEKSYKGN 114
           PL++T V TV  ++ FL C+       P K+Y G+
Sbjct: 80  PLVYTQVVTVAVYSFFLACLVGRQFLNPAKAYPGH 114

>VMD2_MACFA (Q6UY87) Bestrophin-1 (Vitelliform macular dystrophy protein 2)|
          Length = 585

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 218 PLIFT*VQTVPYHATFLLCIYVVNQGGPEKSYKGN 114
           PL++T V TV  ++ FL C+       P K+Y G+
Sbjct: 233 PLVYTQVVTVAVYSFFLTCLVGRQFLNPAKAYPGH 267

>VMD2_HUMAN (O76090) Bestrophin-1 (Vitelliform macular dystrophy protein 2)|
           (TU15B)
          Length = 585

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 218 PLIFT*VQTVPYHATFLLCIYVVNQGGPEKSYKGN 114
           PL++T V TV  ++ FL C+       P K+Y G+
Sbjct: 233 PLVYTQVVTVAVYSFFLTCLVGRQFLNPAKAYPGH 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,150,186
Number of Sequences: 219361
Number of extensions: 876789
Number of successful extensions: 2003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)