ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANB_BACSU (P52996) 3-methyl-2-oxobutanoate hydroxymethyltransfe... 31 4.1
2RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor (Germin-like pr... 30 9.2

>PANB_BACSU (P52996) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 277

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = -2

Query: 508 TIGALVTSFSHEVGSLNPGTPQALLQSCATFAAFSCIMEGLNKQQAAMAHTLGGNALTFA 329
           T+G  V    H   ++  G P   + +   F ++    E   K  AA+    G +AL   
Sbjct: 55  TVGVTVADMIHHTKAVKRGAPNTFIVTDMPFMSYHLSKEDTLKNAAAIVQESGADALKLE 114

Query: 328 HGKG 317
            G+G
Sbjct: 115 GGEG 118



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>RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor (Germin-like protein)|
          Length = 217

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 439 LLQSCATFAAFSCIMEGLNKQQAAMAHTLGGNALTFAHGKGGVLPPFTLP 290
           L++  AT   F  ++ G N Q+    +TLG +     +  GG+ PP T P
Sbjct: 61  LVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHP 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,677,996
Number of Sequences: 219361
Number of extensions: 2031203
Number of successful extensions: 4796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4795
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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