Clone Information

BLAST Search Result

Clone Name	rbasd1i14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
2	dbj\|AP004584.3\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
3	dbj\|AK120061.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
4	dbj\|AK061846.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
5	gb\|AY104446.1\| Zea mays PCO085677 mRNA sequence	86	2e-13
6	emb\|BX005229.30\| Zebrafish DNA sequence from clone DKEY-21D17 in...	50	0.010
7	emb\|BX927356.22\| Zebrafish DNA sequence from clone DKEY-54K20 in...	50	0.010
8	gb\|AC163350.4\| Mus musculus BAC clone RP23-186B12 from chromosom...	42	2.4
9	gb\|AC046143.20\| Homo sapiens 3 BAC RP11-534C12 (Roswell Park Can...	42	2.4
10	emb\|BX296551.4\| Zebrafish DNA sequence from clone CH211-224L10 i...	42	2.4
11	ref\|XM_471173.1\| Oryza sativa (japonica cultivar-group), predic...	40	9.4
12	ref\|NM_191074.1\| Oryza sativa (japonica cultivar-group), predic...	40	9.4
13	gb\|AE017130.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	9.4
14	ref\|XM_414616.1\| PREDICTED: Gallus gallus similar to Chromosome ...	40	9.4
15	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	9.4
16	gb\|BT014575.1\| Lycopersicon esculentum clone 134030R, mRNA sequence	40	9.4
17	ref\|XM_846688.1\| PREDICTED: Canis familiaris similar to A-kinase...	40	9.4
18	emb\|CR626889.13\| Zebrafish DNA sequence from clone DKEY-4P15 in ...	40	9.4
19	gb\|AC117251.3\| Mus musculus BAC clone RP24-372C12 from chromosom...	40	9.4
20	gb\|AC091296.3\| Pan troglodytes clone RP43-109G19, complete sequence	40	9.4
21	gb\|AC121773.3\| Mus musculus BAC clone RP23-349P14 from chromosom...	40	9.4
22	emb\|CR394544.15\| Zebrafish DNA sequence from clone DKEY-117I6 in...	40	9.4
23	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	40	9.4
24	emb\|CR381700.6\| Zebrafish DNA sequence from clone CH211-198F4 in...	40	9.4
25	emb\|AL732629.6\| Zebrafish DNA sequence from clone CH211-146F4 in...	40	9.4
26	emb\|AJ414147.1\| Yersinia pestis strain CO92 complete genome; seg...	40	9.4
27	gb\|AC019288.8\| Homo sapiens chromosome 15, clone RP11-139F4, com...	40	9.4
28	emb\|AJ621739.1\| Gallus gallus partial KIF3A gene for kinesin-lik...	40	9.4
29	gb\|AC091708.2\| Gallus gallus clone XXbac-68C5, complete sequence	40	9.4
30	dbj\|AP003570.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
31	gb\|AC021660.16\| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Canc...	40	9.4
32	gb\|AC113366.2\| Homo sapiens chromosome 5 clone RP11-109F5, compl...	40	9.4
33	gb\|AC007171.5\| Arabidopsis thaliana chromosome 2 clone T8O18 map...	40	9.4
34	gb\|AC163701.4\| Gallus gallus BAC clone CH261-117C7 from chromoso...	40	9.4
35	gb\|AC005231.3\| Homo sapiens PAC clone RP5-1186P10 from 7, comple...	40	9.4
36	gb\|AC010437.7\|AC010437 Homo sapiens chromosome 5 clone CTD-2217J...	40	9.4
37	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
38	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
39	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
40	dbj\|AP004331.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
41	dbj\|AP005546.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
42	emb\|BX119966.7\| Zebrafish DNA sequence from clone CH211-266N15, ...	40	9.4
43	dbj\|AK103158.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.4
44	gb\|AF220764.1\| Methylobacterium nodulans strain ORS2060 methanol...	40	9.4
45	gb\|AC004169.3\|AC004169 Homo sapiens chromosome 4 clone C0236G06 ...	40	9.4
46	emb\|AL662985.3\|OSJN00189 Oryza sativa genomic DNA, chromosome 4,...	40	9.4
47	gb\|AC159985.2\| Gallus gallus BAC clone CH261-18F10 from chromoso...	40	9.4
48	emb\|CR925745.5\| Zebrafish DNA sequence from clone DKEYP-100G5 in...	40	9.4
49	emb\|AL833774.4\| Mouse DNA sequence from clone RP23-383I16 on chr...	40	9.4

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                          
Query: 230    agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 289
              ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 571649 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 571590

                                                                          
Query: 290    atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 349
              ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 571589 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 571533

                                                                          
Query: 350    tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 409
              |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 571532 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 571473

                 
Query: 410    tcc 412
              |||
Sbjct: 571472 tcc 571470



 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                          
Query: 408    tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 467
              ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 571441 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 571382

                                                                          
Query: 468    tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 527
              ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 571381 tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 571322

                               
Query: 528    acatagccgccttgctg 544
               ||||||| ||||||||
Sbjct: 571321 gcatagccaccttgctg 571305



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                          
Query: 549    tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgc 608
              |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  ||||| 
Sbjct: 571288 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgctgt 571229

                                           
Query: 609    gggtagccctgctgagcatacccatcagg 637
              ||||| | |||||||| ||||||||||||
Sbjct: 571228 gggtaactctgctgagaatacccatcagg 571200

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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                          
Query: 230    agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 289
              ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 161609 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 161550

                                                                          
Query: 290    atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 349
              ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 161549 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 161493

                                                                          
Query: 350    tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 409
              |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 161492 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 161433

                 
Query: 410    tcc 412
              |||
Sbjct: 161432 tcc 161430



 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                          
Query: 408    tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 467
              ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 161401 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 161342

                                                                          
Query: 468    tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 527
              ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 161341 tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 161282

                               
Query: 528    acatagccgccttgctg 544
               ||||||| ||||||||
Sbjct: 161281 gcatagccaccttgctg 161265



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                          
Query: 549    tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgc 608
              |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  ||||| 
Sbjct: 161248 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgctgt 161189

                                           
Query: 609    gggtagccctgctgagcatacccatcagg 637
              ||||| | |||||||| ||||||||||||
Sbjct: 161188 gggtaactctgctgagaatacccatcagg 161160

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>dbj|AK120061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I23, full
            insert sequence
          Length = 4843

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 230  agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 289
            ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 4560 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 4501

                                                                        
Query: 290  atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 349
            ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 4500 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 4444

                                                                        
Query: 350  tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 409
            |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 4443 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 4384

               
Query: 410  tcc 412
            |||
Sbjct: 4383 tcc 4381



 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                        
Query: 408  tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 467
            ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 4352 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 4293

                                                                        
Query: 468  tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 527
            ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 4292 tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 4233

                             
Query: 528  acatagccgccttgctg 544
             ||||||| ||||||||
Sbjct: 4232 gcatagccaccttgctg 4216



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 549  tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgc 608
            |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  ||||| 
Sbjct: 4199 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgctgt 4140

                                         
Query: 609  gggtagccctgctgagcatacccatcagg 637
            ||||| | |||||||| ||||||||||||
Sbjct: 4139 gggtaactctgctgagaatacccatcagg 4111

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>dbj|AK061846.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F02, full
            insert sequence
          Length = 1569

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 230  agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 289
            ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 1252 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 1193

                                                                        
Query: 290  atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 349
            ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 1192 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 1136

                                                                        
Query: 350  tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 409
            |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 1135 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 1076

               
Query: 410  tcc 412
            |||
Sbjct: 1075 tcc 1073



 Score =  123 bits (62), Expect = 8e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 408  tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 467
            ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 1044 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 985

                                                                        
Query: 468  tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 527
            ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 984  tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 925

                          
Query: 528  acatagccgccttg 541
             ||||||| |||||
Sbjct: 924  gcatagccaccttg 911



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                       
Query: 549 tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgc 608
           |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  ||||| 
Sbjct: 891 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgctgt 832

                                        
Query: 609 gggtagccctgctgagcatacccatcagg 637
           ||||| | |||||||| ||||||||||||
Sbjct: 831 gggtaactctgctgagaatacccatcagg 803

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>gb|AY104446.1| Zea mays PCO085677 mRNA sequence
          Length = 1489

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                       
Query: 406 catatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataac 465
           ||||||||| ||||||||||||| | |||||||| ||||| || || |||||||| || |
Sbjct: 928 catatcctggctgtgggtaggcacttccatagttaggatctgctggagctccctggtacc 869

                                                      
Query: 466 catagtttgcattgttttgagctgactgatcaccatatgctgg 508
           ||||| | |||||| |||||||||  || ||||||||||||||
Sbjct: 868 catagctcgcattggtttgagctgcttgctcaccatatgctgg 826



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 69/81 (85%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                        
Query: 305  tgctggtggtgcagactgatcataacttggcggatttgtagctggtggctgggtgtatcc 364
            ||||||||  |||||||| ||||||| ||| ||||||||||   | ||||||||||||||
Sbjct: 1059 tgctggtgccgcagactgctcataacctggaggatttgtag---gcggctgggtgtatcc 1003

                                 
Query: 365  tgcctgaccatatccaggctg 385
            |||||| |||||  |||||||
Sbjct: 1002 tgcctggccatacgcaggctg 982



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 567 gcactctgaccatatgctgctggcccttgcccactctgctgcgggtagccctgctgagca 626
           ||||||||||||||||  |||||  | ||||||| |||||| ||||| ||||| ||||||
Sbjct: 764 gcactctgaccatatggagctggtgcctgcccaccctgctgtgggtaaccctgttgagca 705

                     
Query: 627 tacccatcag 636
           || |||||||
Sbjct: 704 tatccatcag 695

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>emb|BX005229.30| Zebrafish DNA sequence from clone DKEY-21D17 in linkage group 17,
             complete sequence
          Length = 94988

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 327   taacttggcggatttgtagctggtg 351
             |||||||||||||||||||||||||
Sbjct: 18820 taacttggcggatttgtagctggtg 18844

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>emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in linkage group 17,
              complete sequence
          Length = 204195

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 327    taacttggcggatttgtagctggtg 351
              |||||||||||||||||||||||||
Sbjct: 121855 taacttggcggatttgtagctggtg 121879

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>gb|AC163350.4| Mus musculus BAC clone RP23-186B12 from chromosome 9, complete sequence
          Length = 203468

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    ctgtcagtggggcttcagagc 188
              |||||||||||||||||||||
Sbjct: 115626 ctgtcagtggggcttcagagc 115606

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>gb|AC046143.20| Homo sapiens 3 BAC RP11-534C12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180365

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 590   cccttgcccactctgctgcgg 610
             |||||||||||||||||||||
Sbjct: 38515 cccttgcccactctgctgcgg 38535

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>emb|BX296551.4| Zebrafish DNA sequence from clone CH211-224L10 in linkage group 23,
             complete sequence
          Length = 180447

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 123   atttaaaacagcaggtgacaaaaca 147
             |||||||||||||| ||||||||||
Sbjct: 62900 atttaaaacagcagttgacaaaaca 62876

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>ref|XM_471173.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 cagcagcagtagcaggctga 239
           ||||||||||||||||||||
Sbjct: 249 cagcagcagtagcaggctga 268

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>ref|NM_191074.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 tttgagctgctggtggtgca 317
           ||||||||||||||||||||
Sbjct: 21  tttgagctgctggtggtgca 2

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>gb|AE017130.1| Yersinia pestis biovar Medievalis str. 91001 section 4 of 16 of the
              complete genome
          Length = 290510

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 605    ctgcgggtagccctgctgag 624
              ||||||||||||||||||||
Sbjct: 104456 ctgcgggtagccctgctgag 104475

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>ref|XM_414616.1| PREDICTED: Gallus gallus similar to Chromosome 5 open reading frame 5
            (LOC416297), mRNA
          Length = 4837

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 292  agccactttgagctgctggtggtg 315
            |||| |||||||||||||||||||
Sbjct: 1198 agcctctttgagctgctggtggtg 1221

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 605     ctgcgggtagccctgctgag 624
               ||||||||||||||||||||
Sbjct: 3259467 ctgcgggtagccctgctgag 3259486

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>gb|BT014575.1| Lycopersicon esculentum clone 134030R, mRNA sequence
          Length = 2526

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 455  tccctgataaccatagtttgcattgttt 482
            ||||||||||||||||  ||||||||||
Sbjct: 2123 tccctgataaccatagcctgcattgttt 2096

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>ref|XM_846688.1| PREDICTED: Canis familiaris similar to A-kinase anchor protein 11
            (Protein kinase A anchoring protein 11) (PRKA11) (A
            kinase anchor protein 220 kDa) (AKAP 220) (hAKAP220)
            (LOC609431), mRNA
          Length = 5823

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  atttaaaacagcaggtgaca 142
            ||||||||||||||||||||
Sbjct: 3873 atttaaaacagcaggtgaca 3854

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>emb|CR626889.13| Zebrafish DNA sequence from clone DKEY-4P15 in linkage group 15,
             complete sequence
          Length = 205513

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   ggcaaagatttaaaacagcaggtg 139
             |||||||||||| |||||||||||
Sbjct: 22171 ggcaaagatttagaacagcaggtg 22194

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>gb|AC117251.3| Mus musculus BAC clone RP24-372C12 from chromosome 8, complete sequence
          Length = 191927

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 460   gataaccatagtttgcattgtttt 483
             |||||||||||||| |||||||||
Sbjct: 95308 gataaccatagtttccattgtttt 95331

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>gb|AC091296.3| Pan troglodytes clone RP43-109G19, complete sequence
          Length = 185979

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 487    ctgactgatcaccatatgct 506
              ||||||||||||||||||||
Sbjct: 164608 ctgactgatcaccatatgct 164627

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>gb|AC121773.3| Mus musculus BAC clone RP23-349P14 from chromosome 1, complete sequence
          Length = 191790

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aacatagctttcaaatatat 163
              ||||||||||||||||||||
Sbjct: 155854 aacatagctttcaaatatat 155873

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>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7,
            complete sequence
          Length = 194826

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   aagttaatataacaatctac 65
            ||||||||||||||||||||
Sbjct: 5777 aagttaatataacaatctac 5758

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 603     tgctgcgggtagccctgctg 622
               ||||||||||||||||||||
Sbjct: 1114253 tgctgcgggtagccctgctg 1114272

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>emb|CR381700.6| Zebrafish DNA sequence from clone CH211-198F4 in linkage group 14,
              complete sequence
          Length = 203630

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gttcaaagttaatataacaa 60
              ||||||||||||||||||||
Sbjct: 191284 gttcaaagttaatataacaa 191265



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     gttcaaagttaatataacaa 60
              ||||||||||||||||||||
Sbjct: 189689 gttcaaagttaatataacaa 189708

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>emb|AL732629.6| Zebrafish DNA sequence from clone CH211-146F4 in linkage group 12
             Contains a novel gene similar to human BAP28, a putative
             novel gene, a novel gene similar to human ARG1 (liver
             arginase), a novel gene similar to human and rodent P4HA1
             (procollagen-proline, 2-oxoglutarate 4-dioxygenase
             (proline 4-hydroxylase), alpha polypeptide I), a novel
             gene for a protein with a NUDIX domain and four CpG
             islands, complete sequence
          Length = 164474

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   aacatggcaaagatttaaaa 130
             ||||||||||||||||||||
Sbjct: 95332 aacatggcaaagatttaaaa 95313

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>emb|AJ414147.1| Yersinia pestis strain CO92 complete genome; segment 7/20
          Length = 199050

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 605   ctgcgggtagccctgctgag 624
             ||||||||||||||||||||
Sbjct: 59274 ctgcgggtagccctgctgag 59255

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>gb|AC019288.8| Homo sapiens chromosome 15, clone RP11-139F4, complete sequence
          Length = 138517

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aacatagctttcaaatatat 163
             ||||||||||||||||||||
Sbjct: 53560 aacatagctttcaaatatat 53541

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>emb|AJ621739.1| Gallus gallus partial KIF3A gene for kinesin-like protein KIF3A, exons
             1-2 BAC bW075D23 clone, contig 5
          Length = 62198

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   aaaacagcaggtgacaaaac 146
             ||||||||||||||||||||
Sbjct: 28374 aaaacagcaggtgacaaaac 28355

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>gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence
          Length = 124309

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tttcaaatatatcttgctgt 171
             ||||||||||||||||||||
Sbjct: 17874 tttcaaatatatcttgctgt 17855

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>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0432B10
          Length = 131918

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tttgagctgctggtggtgca 317
              ||||||||||||||||||||
Sbjct: 126906 tttgagctgctggtggtgca 126887

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>gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    aaacatagctttcaaatata 162
              ||||||||||||||||||||
Sbjct: 130392 aaacatagctttcaaatata 130373

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>gb|AC113366.2| Homo sapiens chromosome 5 clone RP11-109F5, complete sequence
          Length = 168484

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   caggtgacaaaacatagctt 153
             ||||||||||||||||||||
Sbjct: 13760 caggtgacaaaacatagctt 13741

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>gb|AC007171.5| Arabidopsis thaliana chromosome 2 clone T8O18 map mi54, complete
             sequence
          Length = 74494

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tgataaccatagtttgcatt 478
             ||||||||||||||||||||
Sbjct: 45670 tgataaccatagtttgcatt 45689

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>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete
              sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    tttcaaatatatcttgctgt 171
              ||||||||||||||||||||
Sbjct: 202402 tttcaaatatatcttgctgt 202421

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>gb|AC005231.3| Homo sapiens PAC clone RP5-1186P10 from 7, complete sequence
          Length = 102112

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   ctgactgatcaccatatgct 506
             ||||||||||||||||||||
Sbjct: 64018 ctgactgatcaccatatgct 63999

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>gb|AC010437.7|AC010437 Homo sapiens chromosome 5 clone CTD-2217J21, complete sequence
          Length = 103696

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   caggtgacaaaacatagctt 153
             ||||||||||||||||||||
Sbjct: 20546 caggtgacaaaacatagctt 20565

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     cagcagcagtagcaggctga 239
               ||||||||||||||||||||
Sbjct: 2003955 cagcagcagtagcaggctga 2003974

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 215      gtatccagcagcagtagcaggctg 238
                |||||||||||||||| |||||||
Sbjct: 22451881 gtatccagcagcagtatcaggctg 22451858

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 298      tttgagctgctggtggtgca 317
                ||||||||||||||||||||
Sbjct: 34629612 tttgagctgctggtggtgca 34629593

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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   tttgagctgctggtggtgca 317
             ||||||||||||||||||||
Sbjct: 81629 tttgagctgctggtggtgca 81610

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>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1003_C09
          Length = 124746

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   gtatccagcagcagtagcaggctg 238
             |||||||||||||||| |||||||
Sbjct: 88370 gtatccagcagcagtatcaggctg 88347

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>emb|BX119966.7| Zebrafish DNA sequence from clone CH211-266N15, complete sequence
          Length = 182813

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     aagttaatataacaatctac 65
              ||||||||||||||||||||
Sbjct: 179844 aagttaatataacaatctac 179863

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>dbj|AK103158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121B04, full
           insert sequence
          Length = 2476

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 tttgagctgctggtggtgca 317
           ||||||||||||||||||||
Sbjct: 203 tttgagctgctggtggtgca 184

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>gb|AF220764.1| Methylobacterium nodulans strain ORS2060 methanol dehydrogenase
           MxaF (mxaF) gene, complete cds
          Length = 3543

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 670 ggttgctgggctggcggagc 689
           ||||||||||||||||||||
Sbjct: 238 ggttgctgggctggcggagc 257

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>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence
          Length = 189805

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 588    ggcccttgcccactctgctg 607
              ||||||||||||||||||||
Sbjct: 116402 ggcccttgcccactctgctg 116383

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>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
             complete sequence
          Length = 126447

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   cagcagcagtagcaggctga 239
             ||||||||||||||||||||
Sbjct: 20615 cagcagcagtagcaggctga 20634

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>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete
             sequence
          Length = 211288

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aaaacagcaggtgacaaaac 146
             ||||||||||||||||||||
Sbjct: 69601 aaaacagcaggtgacaaaac 69620

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>emb|CR925745.5| Zebrafish DNA sequence from clone DKEYP-100G5 in linkage group 10,
             complete sequence
          Length = 197787

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tccagcagcagtagcaggct 237
             ||||||||||||||||||||
Sbjct: 71741 tccagcagcagtagcaggct 71722

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>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
              sequence
          Length = 194045

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 570    ctctgaccatatgctgctgg 589
              ||||||||||||||||||||
Sbjct: 174581 ctctgaccatatgctgctgg 174562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,173,191
Number of Sequences: 3902068
Number of extensions: 6173191
Number of successful extensions: 115655
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115390
Number of HSP's gapped (non-prelim): 257
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result