Clone Information

BLAST Search Result

Clone Name	rbasd1i09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Ves...	187	2e-47
2	VTI11_ARATH (Q9SEL6) Vesicle transport v-SNARE 11 (AtVTI11) (Ves...	180	3e-45
3	VTI12_ARATH (Q9SEL5) Vesicle transport v-SNARE 12 (AtVTI12) (Ves...	177	2e-44
4	VTI1_SCHPO (P78768) Vesicle transport v-SNARE protein vti1	82	1e-15
5	VTI1_YEAST (Q04338) t-SNARE VTI1 (Qb-SNARE VTI1) (Vesicle transp...	77	4e-14
6	VTI1B_MOUSE (O88384) Vesicle transport through interaction with ...	69	1e-11
7	VTI1A_MOUSE (O89116) Vesicle transport through interaction with ...	69	2e-11
8	VTI1B_HUMAN (Q9UEU0) Vesicle transport through interaction with ...	67	6e-11
9	VTI1A_RAT (Q9JI51) Vesicle transport through interaction with t-...	62	1e-09
10	VTI1A_HUMAN (Q96AJ9) Vesicle transport through interaction with ...	59	2e-08
11	MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor ...	47	5e-05
12	MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor ...	46	8e-05
13	SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)	40	0.006
14	GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2	40	0.008
15	SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)	38	0.022
16	SY111_ARATH (Q42374) Syntaxin-related protein KNOLLE (Syntaxin-1...	37	0.038
17	GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa ...	37	0.065
18	GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kD...	37	0.065
19	GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kD...	37	0.065
20	GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kD...	37	0.065
21	GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1	37	0.065
22	SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)	37	0.065
23	SPTA1_MOUSE (P08032) Spectrin alpha chain, erythrocyte (Erythroi...	36	0.11
24	YMQ5_CAEEL (P83351) Hypothetical protein K02D10.5 on chromosome III	32	1.6
25	STX2_HUMAN (P32856) Syntaxin-2 (Epimorphin)	32	1.6
26	MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA p...	31	2.7
27	KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A	31	2.7
28	SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)	31	3.5
29	STX6_PONPY (Q5R6Q2) Syntaxin-6	31	3.5
30	STX6_HUMAN (O43752) Syntaxin-6	31	3.5
31	TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)	30	4.6
32	TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)	30	4.6
33	TPMM_TRICO (P15846) Tropomyosin, muscle	30	4.6
34	UL24_SHV21 (Q01005) Gene 20 protein	30	4.6
35	MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion tran...	30	6.0
36	YDLF_SCHPO (P87129) Hypothetical protein C3A12.15 in chromosome I	30	6.0
37	TAF1_DROME (P51123) Transcription initiation factor TFIID subuni...	30	6.0
38	GLE1_PONPY (Q5RAS2) Nucleoporin GLE1 (GLE1-like protein)	30	7.9
39	KIF5A_MOUSE (P33175) Kinesin heavy chain isoform 5A (Neuronal ki...	30	7.9
40	Y429_METAC (Q8TTK2) UPF0272 protein MA0429	30	7.9
41	Y1617_METMA (Q8PWH0) UPF0272 protein MM1617	30	7.9
42	KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal ki...	30	7.9
43	MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS	30	7.9
44	MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS	30	7.9
45	MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS	30	7.9

>VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport|
           v-SNARE protein VTI13) (Vesicle soluble NSF attachment
           protein receptor 13)
          Length = 221

 Score =  187 bits (476), Expect = 2e-47
 Identities = 93/129 (72%), Positives = 110/129 (85%)
 Frame = -1

Query: 643 ISAPNARQTTREELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEEL 464
           I++ N   T R+ELLE+GMADTL  S DQR RLMM+T+ L ++TDRIK+SRRT+LETEEL
Sbjct: 91  ITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEEL 150

Query: 463 GVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVA 284
           GVSILQDLH QRQSLL AH+TLHGVDDNVGKSKKIL  M++RM+RNKW IG II+ LV+A
Sbjct: 151 GVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLA 210

Query: 283 ILIILYFKL 257
           I+ ILYFKL
Sbjct: 211 IIFILYFKL 219

to top

>VTI11_ARATH (Q9SEL6) Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport|
           v-SNARE protein VTI1a) (Vesicle soluble NSF attachment
           protein receptor VTI1a) (AtVTI1a)
          Length = 221

 Score =  180 bits (457), Expect = 3e-45
 Identities = 88/129 (68%), Positives = 106/129 (82%)
 Frame = -1

Query: 643 ISAPNARQTTREELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEEL 464
           I++       R+ELLE+GMADT   S DQR RLMM+TERL ++TDR+K+SRRTM+ETEE+
Sbjct: 91  ITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEI 150

Query: 463 GVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVA 284
           GVSILQDLH QRQSLL AH+TLHGVDDN+GKSKKIL  M++RM++NKW IG II  L+ A
Sbjct: 151 GVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAA 210

Query: 283 ILIILYFKL 257
           I IILYFKL
Sbjct: 211 IFIILYFKL 219

to top

>VTI12_ARATH (Q9SEL5) Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle transport|
           v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
           protein receptor VTI1b) (AtVTI1b)
          Length = 222

 Score =  177 bits (449), Expect = 2e-44
 Identities = 86/131 (65%), Positives = 112/131 (85%)
 Frame = -1

Query: 643 ISAPNARQTTREELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEEL 464
           +S+ +A+ ++REEL+ESGMAD  AVS DQRGRL M+ ERL+QS+DRI+ESRR MLETEE+
Sbjct: 92  VSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEV 151

Query: 463 GVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVA 284
           G+SI+QDL QQRQ+LLHAH+ LHGVDD + KSKK+L AMS+RM RNKWII  +I  LV+A
Sbjct: 152 GISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLA 211

Query: 283 ILIILYFKLAH 251
           I++I+ +KL+H
Sbjct: 212 IILIISYKLSH 222

to top

>VTI1_SCHPO (P78768) Vesicle transport v-SNARE protein vti1|
          Length = 214

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 43/101 (42%), Positives = 64/101 (63%)
 Frame = -1

Query: 562 DQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDD 383
           DQR RL+  T RL QS+ R+ ES+R   ETE +G SIL+DLH QR  L H+ + L     
Sbjct: 112 DQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSG 171

Query: 382 NVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 260
           ++ +S + L  M++R+  N++    II+ LV+ IL++LY K
Sbjct: 172 HLDRSLRTLKTMARRLAMNRFFTTAIIAILVILILLVLYSK 212

to top

>VTI1_YEAST (Q04338) t-SNARE VTI1 (Qb-SNARE VTI1) (Vesicle transport v-SNARE|
           protein VTI1) (VPS10-interacting protein 1)
          Length = 216

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
 Frame = -1

Query: 610 EELLESGMADTLA-------VSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSI 452
           + L++SG  D L        +  DQR +L+     L +S DR+K++ R   ETE +G  I
Sbjct: 91  QSLVDSGDRDRLFGDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQI 150

Query: 451 LQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILII 272
           + DL  QR++L +A  TL   D  V KS K L  M++R+  NK+I   II+ L++ IL++
Sbjct: 151 MMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFISYAIIAVLILLILLV 210

Query: 271 LYFK 260
           L+ K
Sbjct: 211 LFSK 214

to top

>VTI1B_MOUSE (O88384) Vesicle transport through interaction with t-SNAREs|
           homolog 1B (Vesicle transport v-SNARE protein Vti1-like
           1) (Vti1-rp1)
          Length = 232

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 34/100 (34%), Positives = 61/100 (61%)
 Frame = -1

Query: 559 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 380
           QR  L+  TE LN++T  I+ S R   ET+++G  I+++L +QR  L      L   ++N
Sbjct: 128 QRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNEN 187

Query: 379 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 260
           + KS+KIL +MS+++  NK ++  II   +  ++ ++Y+K
Sbjct: 188 LSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYK 227

to top

>VTI1A_MOUSE (O89116) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 217

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 37/116 (31%), Positives = 67/116 (57%)
 Frame = -1

Query: 610 EELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQ 431
           +E+    + D    S +QR  L+  TERL +S+ R++   +  +ETE++G  +L++L   
Sbjct: 97  DEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHD 156

Query: 430 RQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYF 263
           R+ +  A D L   D N+GKS +IL  M +R+ +N+ ++  +   +V+AIL  + F
Sbjct: 157 REKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212

to top

>VTI1B_HUMAN (Q9UEU0) Vesicle transport through interaction with t-SNAREs|
           homolog 1B (Vesicle transport v-SNARE protein Vti1-like
           1) (Vti1-rp1)
          Length = 232

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = -1

Query: 559 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 380
           QR  L+  TE LN++T  I+ S R   ET+++G  I+++L +QR  L      L    +N
Sbjct: 128 QRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSEN 187

Query: 379 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 260
           + KS+KIL +MS+++  NK ++  II   +  +  ++Y+K
Sbjct: 188 LSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYK 227

to top

>VTI1A_RAT (Q9JI51) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 224

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 31/97 (31%), Positives = 60/97 (61%)
 Frame = -1

Query: 562 DQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDD 383
           ++R  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D 
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179

Query: 382 NVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILII 272
           N+GKS +IL  M +R+ +N+ ++  +I  ++V I I+
Sbjct: 180 NLGKSSRILTGMLRRIIQNRILL--VILGIIVVITIL 214

to top

>VTI1A_HUMAN (Q96AJ9) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 203

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 30/91 (32%), Positives = 52/91 (57%)
 Frame = -1

Query: 610 EELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQ 431
           +E+    + D    S +QR  L+  TERL +S+ R++   +  +ETE++G  +L++L   
Sbjct: 97  DEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHD 156

Query: 430 RQSLLHAHDTLHGVDDNVGKSKKILAAMSKR 338
           R+ +  A + L   D N+GKS +IL  M +R
Sbjct: 157 REKIQRARERLRETDANLGKSSRILTGMLRR 187

to top

>MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member|
           2-1) (27 kDa Golgi SNARE protein)
          Length = 225

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
 Frame = -1

Query: 613 REELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQ 434
           R+ L     AD L  ++ +   ++   +   Q+   +K S+R + E+   GV+IL    +
Sbjct: 107 RKMLEAKERADLLGRASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAE 166

Query: 433 QRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVVAILII 272
           QR  L  A      V + VG S  +L  + +R   + WI   G+I+TLV+  L I
Sbjct: 167 QRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFI 221

to top

>MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor complex member|
           2-2)
          Length = 219

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
 Frame = -1

Query: 613 REELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQ 434
           R+ L     AD L   + +   ++   +   Q  + +K S+R + ++ + GV+IL    +
Sbjct: 101 RKMLEAKERADLLGRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAE 160

Query: 433 QRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVVAILII 272
           QR  L  A      V + VG S  +L  + +R   + WI   G+I+TLV+  L I
Sbjct: 161 QRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFI 215

to top

>SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
 Frame = -1

Query: 643 ISAPNARQTTREELLESGMADTL---AVSTDQRGRLMMTTERLNQSTDRIKESRRTMLET 473
           ++   A + T E+L+ SG ++     A+    RG++M T   + +  D +KE  R++LE 
Sbjct: 167 VTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLEL 226

Query: 472 EELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL--------AAMSKRMDRNKWI 317
            ++ + +   +  Q        + L+ ++ NV K+   +         A   + +  KW 
Sbjct: 227 HQVFLDMAALVEAQ-------GNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWA 279

Query: 316 IGGIISTLVVAILII 272
               I  +VV I+I+
Sbjct: 280 CIATILAIVVVIVIL 294

to top

>GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2|
          Length = 216

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -1

Query: 463 GVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVV 287
           G  IL+ L  QR +L  AH  +  +   +G S   +  + +R+  ++ I IGG++ TL++
Sbjct: 147 GSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLI 206

Query: 286 AILIILYFKL 257
             LII +  L
Sbjct: 207 IALIIYFLVL 216

to top

>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)|
          Length = 298

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
 Frame = -1

Query: 643 ISAPNARQTTREELLESGMADTL---AVSTDQRGRLMMTTERLNQSTDRIKESRRTMLET 473
           I+   A + T + L+ SG ++     A+    RG+++ T   + +  D +KE  + +LE 
Sbjct: 159 ITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLEL 218

Query: 472 EELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK-SKKILAAMSKRMDRNKWIIGGIIST 296
            ++ + +   +  Q Q L +    +      V + + ++  A   +    KW    II  
Sbjct: 219 HQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTCYAIILF 278

Query: 295 LVVAILIIL 269
           +V+ IL+++
Sbjct: 279 IVIFILLLI 287

to top

>SY111_ARATH (Q42374) Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111)|
          Length = 310

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
 Frame = -1

Query: 580 TLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSL----LH 413
           T A+    +G+++ T   +    D  KE  +++LE  ++ + +   +  Q + +     H
Sbjct: 197 TRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHH 256

Query: 412 AHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIIL 269
             +  H V D   + K    A S + +  KW+  GII  L++ +++++
Sbjct: 257 VINASHYVADGANELK---TAKSHQRNSRKWMCIGIIVLLLIILIVVI 301

to top

>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 535 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 356
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 355 AAMSKRMDRNKWIIGGIISTLVVAILIILY 266
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

to top

>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 535 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 356
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 355 AAMSKRMDRNKWIIGGIISTLVVAILIILY 266
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

to top

>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 535 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 356
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 355 AAMSKRMDRNKWIIGGIISTLVVAILIILY 266
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

to top

>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 535 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 356
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 355 AAMSKRMDRNKWIIGGIISTLVVAILIILY 266
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

to top

>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1|
          Length = 248

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 535 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 356
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 158 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 217

Query: 355 AAMSKRMDRNKWIIGGIISTLVVAILIILY 266
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 218 QRINLRKRRDSLILGGVIG--ICTILLLLY 245

to top

>SY124_ARATH (O64791) Putative syntaxin-124 (AtSYP124)|
          Length = 303

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
 Frame = -1

Query: 643 ISAPNARQTTREELLESGMADTL---AVSTDQRGRLMMTTERLNQSTDRIKESRRTMLET 473
           I+   A + T E L+ SG ++     A+    RG+++ T   + +  D +KE  + ++E 
Sbjct: 164 ITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIEL 223

Query: 472 EELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK-SKKILAAMSKRMDRNKWIIGGIIST 296
            ++ + +   +  Q Q L      +      V + + ++  A   +    KW    I+  
Sbjct: 224 HQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYAILLF 283

Query: 295 LVVAILIIL 269
           +VV  L+++
Sbjct: 284 IVVFALLLI 292

to top

>SPTA1_MOUSE (P08032) Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)|
          Length = 2415

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
 Frame = -1

Query: 448  QDLHQQRQSLLHAHDTLHGV----DDNVGKSKKILAAMSKRMDRNKWI--IGGIIST 296
            +DL +QR  L  A DTL G+     +++ ++ K    +SK  D   WI  IGG+IS+
Sbjct: 1256 EDLQKQRTELNEAWDTLQGLTSDRKESLNEAHKFFLFLSKASDLENWIKTIGGVISS 1312

to top

>YMQ5_CAEEL (P83351) Hypothetical protein K02D10.5 on chromosome III|
          Length = 277

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 526 LNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAH---DTLHGVDDNVGKSKKIL 356
           L +S D  + SRR +  +E++G S  Q L +QR+ L +     D +H       ++   L
Sbjct: 47  LQESLDSTERSRRHLENSEKIGTSTAQQLLEQREKLENTEKNLDEIHRTTQMTQRNLNSL 106

Query: 355 AAMSKRMDRNKW 320
            +    M +NK+
Sbjct: 107 KSFFGGMFKNKF 118

to top

>STX2_HUMAN (P32856) Syntaxin-2 (Epimorphin)|
          Length = 288

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = -1

Query: 610 EELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRR---TMLETEELGVSILQDL 440
           EE+LESG       ++D      +T + LN+   R K+  +   ++ E  E+ + +   +
Sbjct: 165 EEMLESGKPSIF--TSDIISDSQITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFV 222

Query: 439 HQQRQSLLHAHDTLHGVDDNVG----KSKKILAAMSKRMDRNKWIIGGIISTLVVAILII 272
             Q + + +    +    D V     ++KK +   SK   R KWII  +   LVV I++I
Sbjct: 223 ETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQSKAR-RKKWIIIAVSVVLVVIIVLI 281

Query: 271 L 269
           +
Sbjct: 282 I 282

to top

>MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA polymerase|
           alpha holoenzyme-associated protein P1) (P1-MCM3)
          Length = 812

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -1

Query: 535 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 356
           ++++  S  R+K  +  +LE       + Q+ H+Q   +LH  ++++   +    S++I 
Sbjct: 738 SQKVELSEPRLKAFKAALLE-------VFQEAHEQSVGMLHLTESINRNREEPFSSEEIQ 790

Query: 355 AAMSKRMDRNKWIIG-GII 302
           A +S+  D N+ ++  GI+
Sbjct: 791 ACLSRMQDDNQVMVSEGIV 809

to top

>KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A|
          Length = 1032

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -1

Query: 532 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 353
           + +NQ +  I++ ++ ML+ EEL VS   D  + +Q L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQQELSHLQSENDAAKDEV---KEVLQ 489

Query: 352 AMSK 341
           A+ +
Sbjct: 490 ALEE 493

to top

>SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)|
          Length = 336

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
 Frame = -1

Query: 637 APNARQTTREELLESGMADTLAVSTDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGV 458
           AP   Q  R   +E+  +  + +S      L  T  +     +   +SR   L + E  +
Sbjct: 211 APPGSQLRRRSAIENAPSQQMEMSL-----LQQTVPK----QENYSQSRAVALHSVESRI 261

Query: 457 SILQDLHQQRQSLLHAHDTLH-GVDDNVGKS-------KKILAAMSKRMDRNKWIIGGII 302
           + L  +  Q  +++     L   +DDN+ +S       +  L     R+  N+W++  I 
Sbjct: 262 TELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRWLMMKIF 321

Query: 301 STLVVAILIILYF 263
           + +++ +++ L+F
Sbjct: 322 AVIILFLIVFLFF 334

to top

>STX6_PONPY (Q5R6Q2) Syntaxin-6|
          Length = 255

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
 Frame = -1

Query: 628 ARQTTREELL-ESGMADTLAVSTDQRGRLMMTTERLNQ--------STDRIKESRRTMLE 476
           A +  R+ LL +SG  +    +TD+ GRL    +R N             I E +   LE
Sbjct: 115 AERKNRQALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLE 174

Query: 475 TEELGVSILQDLHQQ-----RQSLLHAHDTLHGVDDNVGKSKKILAAMSK----RMDRNK 323
                + +L+++ Q+      +  +   D  H ++    +   ++  ++K      DR +
Sbjct: 175 LVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQ 234

Query: 322 WIIGGIISTLVVAILII 272
           W    I+  +++ +LI+
Sbjct: 235 WCAIAILFAVLLVVLIL 251

to top

>STX6_HUMAN (O43752) Syntaxin-6|
          Length = 255

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
 Frame = -1

Query: 628 ARQTTREELL-ESGMADTLAVSTDQRGRLMMTTERLNQ--------STDRIKESRRTMLE 476
           A +  R+ LL +SG  +    +TD+ GRL    +R N             I E +   LE
Sbjct: 115 AERKNRQALLGDSGSQNWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLE 174

Query: 475 TEELGVSILQDLHQQ-----RQSLLHAHDTLHGVDDNVGKSKKILAAMSK----RMDRNK 323
                + +L+++ Q+      +  +   D  H ++    +   ++  ++K      DR +
Sbjct: 175 LVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQ 234

Query: 322 WIIGGIISTLVVAILII 272
           W    I+  +++ +LI+
Sbjct: 235 WCAIAILFAVLLVVLIL 251

to top

>TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)|
          Length = 284

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/72 (22%), Positives = 41/72 (56%)
 Frame = -1

Query: 550 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 371
           ++   TE+L +  + ++++++ M++TE        DL + ++ L  A+  L   +  V +
Sbjct: 28  KVRQMTEKLERIEEELRDTQKKMMQTE-------NDLVKAQEDLSVANTNLEDKEKKVQE 80

Query: 370 SKKILAAMSKRM 335
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

to top

>TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)|
          Length = 284

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/72 (20%), Positives = 41/72 (56%)
 Frame = -1

Query: 550 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 371
           ++   T++L +  + ++++++ M++TE        DL + ++ L  A+  L   +  V +
Sbjct: 28  KVRQMTDKLERIEEELRDTQKKMMQTE-------NDLDKAQEDLSTANSNLEEKEKKVQE 80

Query: 370 SKKILAAMSKRM 335
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

to top

>TPMM_TRICO (P15846) Tropomyosin, muscle|
          Length = 284

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/72 (22%), Positives = 40/72 (55%)
 Frame = -1

Query: 550 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 371
           ++   TE+L +  + ++++++ M++TE        DL + ++ L  A   L   +  V +
Sbjct: 28  KVRQITEKLERVEEELRDTQKKMMQTE-------NDLDKAQEDLAAATSQLEEKEKKVQE 80

Query: 370 SKKILAAMSKRM 335
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

to top

>UL24_SHV21 (Q01005) Gene 20 protein|
          Length = 303

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 197 RLSGRRCTLDNTDCPLKFTVSPNIFKYLSCSLACHV*QHSCQEVSCARPFYDVKL 33
           +++G +  L+      K+TVS +IFK+LS S       H C   +  R F++V L
Sbjct: 21  KIAGNKAHLETYKKLAKYTVSASIFKFLSIS-------HPCPLRAKTRLFFEVSL 68

to top

>MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion transporter 1|
           (ATP-binding cassette sub-family C member 2)
          Length = 1543

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
 Frame = -1

Query: 505 IKESRRTMLETEELGVSILQDLHQQRQSLLHA--------HDTLHGVDDNVGKSKKILAA 350
           I+E+ +    T +    + +DL + RQ+L             T HG+     +S+ +L  
Sbjct: 228 IEENLKAKSLTSKFKTIMTKDLQKARQALQRRLKKSQQSPEGTSHGLTKKQSQSQDVLVL 287

Query: 349 MSKRMDRNK----------WIIGGIISTLVVAILIILYFKLAH 251
              +  + K          W++  +  T  V IL     KLAH
Sbjct: 288 EDSKKKKKKSEATKDFPKSWLVKALFKTFYVVILKSFILKLAH 330

to top

>YDLF_SCHPO (P87129) Hypothetical protein C3A12.15 in chromosome I|
          Length = 756

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
 Frame = -1

Query: 571 VSTDQRGRLMMT-TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH 395
           ++ D  G L ++ +ERL +S  ++  +++T  + +      + DL+    SLL    TL 
Sbjct: 33  ITYDDLGSLRLSLSERLQESVKKLDANKKTYEDAKLSMGEKMDDLNSSIVSLLQELSTLQ 92

Query: 394 GVDDNVGKSKKILAAMSKRMDRNKWIIGGIISTLV-VAILIILYFKL 257
            V +N   S   + +  K +D  K  +   ++ L  + +L+  Y KL
Sbjct: 93  SVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKL 139

to top

>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 152  RDNLCCPMYSGVQTTLSHNY*TPTVCGTYLAGSVSELKVEYDE 280
            R N  CP+YSG+Q++LS +   P++   +   S  E+ ++ D+
Sbjct: 1358 RTNKACPLYSGMQSSLSQS--NPSLADDFDEQSEKEMTMDDDD 1398

to top

>GLE1_PONPY (Q5RAS2) Nucleoporin GLE1 (GLE1-like protein)|
          Length = 698

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = -1

Query: 607 ELLESGMADTLA----VSTDQRGRLMMTTERLNQSTD-RIKESRRTMLETEELGVSILQD 443
           E++E    + L     +  + R R  +   +L ++   R+K++ +  L  EE G   L+ 
Sbjct: 189 EVMEKSSREALGHQEKLKAEHRHRAKILNLKLREAEQQRVKQAEQERLRKEE-GQVRLRA 247

Query: 442 LHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWIIGGII 302
           L+  R+ +L     L   + + G  K  LAA   R ++   +I GII
Sbjct: 248 LYALREEMLQLSQQLDASEQHKGLLKVDLAAFQTRGNQLCSLISGII 294

to top

>KIF5A_MOUSE (P33175) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy|
           chain) (NKHC) (Kinesin heavy chain neuron-specific 1)
          Length = 1027

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 532 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 353
           + +NQ +  I++ ++ ML+ EEL VS   D  + ++ L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEV---KEVLQ 489

Query: 352 AMSK 341
           A+ +
Sbjct: 490 ALEE 493

to top

>Y429_METAC (Q8TTK2) UPF0272 protein MA0429|
          Length = 396

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 610 EELLESGMADTLAV-STDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQ 434
           EELL  G  D   + +T ++GR     + + +  D  K +R+ ++ET  LGV ++   H+
Sbjct: 267 EELLSMGARDVAIMPATMKKGRPAHIIKVIAKPEDSAKLARKIIVETGSLGVRVMPARHR 326

to top

>Y1617_METMA (Q8PWH0) UPF0272 protein MM1617|
          Length = 396

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 610 EELLESGMADTLAV-STDQRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQ 434
           EELL  G  D   + +T ++GR     + + +  D  K +R+ ++ET  LGV ++   H+
Sbjct: 267 EELLSMGARDVAIMPATMKKGRPAHIIKVIAKPEDSAKLARKIIVETGSLGVRVMPARHR 326

to top

>KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy|
           chain) (NKHC) (Kinesin heavy chain neuron-specific 1)
          Length = 1032

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 532 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 353
           + +NQ +  I++ ++ ML+ EEL VS   D  + ++ L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEV---KEVLQ 489

Query: 352 AMSK 341
           A+ +
Sbjct: 490 ALEE 493

to top

>MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -1

Query: 502 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 362
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 361 ILAAMSKRMDRNKWIIGGIISTL 293
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

to top

>MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -1

Query: 502 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 362
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 361 ILAAMSKRMDRNKWIIGGIISTL 293
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

to top

>MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -1

Query: 502 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 362
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 361 ILAAMSKRMDRNKWIIGGIISTL 293
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,271,165
Number of Sequences: 219361
Number of extensions: 1800139
Number of successful extensions: 5214
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 5044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5213
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result