ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1h24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186999.2| Oryza sativa (japonica cultivar-group), mRNA 196 5e-47
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
3dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
4dbj|AK071269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
5gb|AY596584.1| Saccharum officinarum clone SCCCRZ1003F10, comple... 107 4e-20
6ref|NM_189780.1| Oryza sativa (japonica cultivar-group), predic... 98 4e-17
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
8dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
9dbj|AK058479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
10gb|AY104945.1| Zea mays PCO113923 mRNA sequence 92 2e-15
11gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 68 3e-08
12ref|XM_470575.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
14gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
16dbj|AK073045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
17gb|BT020521.1| Arabidopsis thaliana At5g55530 gene, complete cds 60 8e-06
18ref|NM_203207.1| Arabidopsis thaliana unknown protein AT5G55530 ... 60 8e-06
19ref|NM_124935.2| Arabidopsis thaliana unknown protein AT5G55530 ... 60 8e-06
20ref|NM_203206.1| Arabidopsis thaliana unknown protein AT5G55530 ... 60 8e-06
21emb|BX831223.1|CNS09ZIP Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
22emb|BX831182.1|CNS09ZEC Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
23emb|BX829589.1|CNS09YOH Arabidopsis thaliana Full-length cDNA Co... 60 8e-06
24gb|BT004310.1| Arabidopsis thaliana clone RAFL15-32-E21 (R50090)... 60 8e-06
25dbj|AB015479.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 60 8e-06
26gb|BT021091.1| Arabidopsis thaliana At5g55530 gene, complete cds 60 8e-06
27emb|BX832642.1|CNS09ZM1 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
28dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.47
29gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.8
30gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.8
31ref|XM_824295.1| Trypanosoma brucei TREU927 hypothetical protein... 42 1.8
32emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.8
33gb|AE016830.1| Enterococcus faecalis V583, complete genome 42 1.8
34gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromos... 42 1.8
35ref|NM_129360.2| Arabidopsis thaliana CAC3; acetyl-CoA carboxyla... 40 7.3
36ref|NM_179960.1| Arabidopsis thaliana CAC3; acetyl-CoA carboxyla... 40 7.3
37gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.3
38gb|AF056970.1| Arabidopsis thaliana carboxyltransferase alpha su... 40 7.3
39gb|AF056969.1| Arabidopsis thaliana carboxyltransferase alpha su... 40 7.3
40gb|AC125173.3| Mus musculus BAC clone RP24-492I6 from chromosome... 40 7.3
41gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete s... 40 7.3
42gb|CP000088.1| Thermobifida fusca YX, complete genome 40 7.3
43gb|AC009754.10| Homo sapiens chromosome 15 clone RP11-519C12 map... 40 7.3
44gb|AC025917.8| Homo sapiens chromosome 15 clone RP11-23N2 map 15... 40 7.3
45gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 7.3
46dbj|AK221200.1| Arabidopsis thaliana mRNA for carboxyltransferas... 40 7.3
47dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
48gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.3
49gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II sectio... 40 7.3
50emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in ... 40 7.3
51gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 7.3
52gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
53emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.3
54emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5,... 40 7.3 
>ref|NM_186999.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1689

 Score =  196 bits (99), Expect = 5e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                        
Query: 316  cgctcttgtcgctgccattgtccaggtccagcgggagcttcatcttggccagcgactccg 375
            |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1338 cgctcttgtcgctgccgttgtccaggtccagcgggagcttcatcttggcgagggactccg 1279

                                                                        
Query: 376  tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggttcacttgcacct 435
            ||||||||||||||||||||||||||||||||||||||||||||||||  || |  ||||
Sbjct: 1278 tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggtcgaccttgacct 1219

                           
Query: 436  cctgctcgaagttga 450
            ||||||||| |||||
Sbjct: 1218 cctgctcgaggttga 1204



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 68/79 (86%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 184  agaagaaggctcggcttccgtagaacaccttgggagatttctcctgcgcacccccggccg 243
            ||||||| || |||||||||||||| || ||||||||||||||| ||   || |||||| 
Sbjct: 1488 agaagaaagcacggcttccgtagaatactttgggagatttctccggc---ccaccggcca 1432

                               
Query: 244  tcggtttcttcgccgccgc 262
            |||| ||||||||||||||
Sbjct: 1431 tcggcttcttcgccgccgc 1413
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  196 bits (99), Expect = 5e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                            
Query: 316      cgctcttgtcgctgccattgtccaggtccagcgggagcttcatcttggccagcgactccg 375
                |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 23694734 cgctcttgtcgctgccgttgtccaggtccagcgggagcttcatcttggcgagggactccg 23694675

                                                                            
Query: 376      tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggttcacttgcacct 435
                ||||||||||||||||||||||||||||||||||||||||||||||||  || |  ||||
Sbjct: 23694674 tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggtcgaccttgacct 23694615

                               
Query: 436      cctgctcgaagttga 450
                ||||||||| |||||
Sbjct: 23694614 cctgctcgaggttga 23694600



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 68/79 (86%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                            
Query: 184      agaagaaggctcggcttccgtagaacaccttgggagatttctcctgcgcacccccggccg 243
                ||||||| || |||||||||||||| || ||||||||||||||| ||   || |||||| 
Sbjct: 23694884 agaagaaagcacggcttccgtagaatactttgggagatttctccggc---ccaccggcca 23694828

                                   
Query: 244      tcggtttcttcgccgccgc 262
                |||| ||||||||||||||
Sbjct: 23694827 tcggcttcttcgccgccgc 23694809
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>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1060_D03
          Length = 102178

 Score =  196 bits (99), Expect = 5e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                         
Query: 316   cgctcttgtcgctgccattgtccaggtccagcgggagcttcatcttggccagcgactccg 375
             |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 39348 cgctcttgtcgctgccgttgtccaggtccagcgggagcttcatcttggcgagggactccg 39289

                                                                         
Query: 376   tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggttcacttgcacct 435
             ||||||||||||||||||||||||||||||||||||||||||||||||  || |  ||||
Sbjct: 39288 tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggtcgaccttgacct 39229

                            
Query: 436   cctgctcgaagttga 450
             ||||||||| |||||
Sbjct: 39228 cctgctcgaggttga 39214



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 68/79 (86%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                         
Query: 184   agaagaaggctcggcttccgtagaacaccttgggagatttctcctgcgcacccccggccg 243
             ||||||| || |||||||||||||| || ||||||||||||||| ||   || |||||| 
Sbjct: 39498 agaagaaagcacggcttccgtagaatactttgggagatttctccggc---ccaccggcca 39442

                                
Query: 244   tcggtttcttcgccgccgc 262
             |||| ||||||||||||||
Sbjct: 39441 tcggcttcttcgccgccgc 39423
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>dbj|AK071269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088L08, full
            insert sequence
          Length = 1690

 Score =  196 bits (99), Expect = 5e-47
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                        
Query: 316  cgctcttgtcgctgccattgtccaggtccagcgggagcttcatcttggccagcgactccg 375
            |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1339 cgctcttgtcgctgccgttgtccaggtccagcgggagcttcatcttggcgagggactccg 1280

                                                                        
Query: 376  tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggttcacttgcacct 435
            ||||||||||||||||||||||||||||||||||||||||||||||||  || |  ||||
Sbjct: 1279 tgaactgctgcatgctcttcatgtacatgtccatgatctccttctggtcgaccttgacct 1220

                           
Query: 436  cctgctcgaagttga 450
            ||||||||| |||||
Sbjct: 1219 cctgctcgaggttga 1205



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 68/79 (86%), Gaps = 3/79 (3%)
 Strand = Plus / Minus

                                                                        
Query: 184  agaagaaggctcggcttccgtagaacaccttgggagatttctcctgcgcacccccggccg 243
            ||||||| || |||||||||||||| || ||||||||||||||| ||   || |||||| 
Sbjct: 1489 agaagaaagcacggcttccgtagaatactttgggagatttctccggc---ccaccggcca 1433

                               
Query: 244  tcggtttcttcgccgccgc 262
            |||| ||||||||||||||
Sbjct: 1432 tcggcttcttcgccgccgc 1414
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>gb|AY596584.1| Saccharum officinarum clone SCCCRZ1003F10, complete sequence
          Length = 2010

 Score =  107 bits (54), Expect = 4e-20
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                       
Query: 351 agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgtccatg 410
           |||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 483 agcttcattttggccagggaatccgtgaattgctgcatgctcttcatgtacatgtccatg 542

                                                                 
Query: 411 atctccttctggttcacttgcacctcctgctcgaagttgaagctcatcgccggc 464
           ||||  |||  || ||| | |||||||||||||| ||||| ||| ||| |||||
Sbjct: 543 atctggttcccgtccaccttcacctcctgctcgatgttgacgctgatcaccggc 596



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 184 agaagaaggctcggcttccgtagaacaccttgggaga 220
           ||||||| || ||||| || |||||||||||||||||
Sbjct: 313 agaagaacgcccggctgccatagaacaccttgggaga 349
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>ref|NM_189780.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                        
Query: 342  tccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtac 401
            |||| ||| ||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 1073 tccatcggcagcttcatcttggacagcgattcggtgaactgctgcatgctcttcatgtac 1014

                         
Query: 402  atgtccatgatct 414
            || ||||||||||
Sbjct: 1013 atctccatgatct 1001



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 184  agaagaaggctcggcttccgtagaacacc 212
            ||||||| |||| ||||||||||||||||
Sbjct: 1189 agaagaaagctctgcttccgtagaacacc 1161
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                            
Query: 342      tccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtac 401
                |||| ||| ||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 41993777 tccatcggcagcttcatcttggacagcgattcggtgaactgctgcatgctcttcatgtac 41993836

                             
Query: 402      atgtccatgatct 414
                || ||||||||||
Sbjct: 41993837 atctccatgatct 41993849



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 184      agaagaaggctcggcttccgtagaacacc 212
                ||||||| |||| ||||||||||||||||
Sbjct: 41993661 agaagaaagctctgcttccgtagaacacc 41993689
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>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431G06
          Length = 140466

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                         
Query: 342   tccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtac 401
             |||| ||| ||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 95854 tccatcggcagcttcatcttggacagcgattcggtgaactgctgcatgctcttcatgtac 95913

                          
Query: 402   atgtccatgatct 414
             || ||||||||||
Sbjct: 95914 atctccatgatct 95926



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 184   agaagaaggctcggcttccgtagaacacc 212
             ||||||| |||| ||||||||||||||||
Sbjct: 95738 agaagaaagctctgcttccgtagaacacc 95766
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>dbj|AK058479.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C08, full
            insert sequence
          Length = 1686

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                        
Query: 342  tccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtac 401
            |||| ||| ||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 1169 tccatcggcagcttcatcttggacagcgattcggtgaactgctgcatgctcttcatgtac 1110

                         
Query: 402  atgtccatgatct 414
            || ||||||||||
Sbjct: 1109 atctccatgatct 1097



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 184  agaagaaggctcggcttccgtagaacacc 212
            ||||||| |||| ||||||||||||||||
Sbjct: 1285 agaagaaagctctgcttccgtagaacacc 1257
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>gb|AY104945.1| Zea mays PCO113923 mRNA sequence
          Length = 1032

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                       
Query: 351 agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgtccatg 410
           |||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 558 agcttcattttggccagggaatccgtgaattgctgcatactcttcatgtacatgtccatg 499

                                                                 
Query: 411 atctccttctggttcacttgcacctcctgctcgaagttgaagctcatcgccggc 464
           || |  |||  || ||| | |||||||||||||| ||||| ||| ||| |||||
Sbjct: 498 atttggttcccgtccaccttcacctcctgctcgatgttgacgctgatcaccggc 445



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 184 agaagaaggctcggcttccgtagaacaccttgggaga 220
           ||||||| || ||||| ||||||||||||||||||||
Sbjct: 728 agaagaacgcccggctgccgtagaacaccttgggaga 692
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 354   ttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacat 403
             ||||||||||||||||||||  |||||||| |||||||||||||| ||||
Sbjct: 27608 ttcatcttggccagcgactcgttgaactgccgcatgctcttcatgcacat 27559
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>ref|XM_470575.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 351  agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgt 405
            ||||||||||| || || || || || ||||||||||||||||||||||||||||
Sbjct: 1088 agcttcatctttgcaagggattcagtaaactgctgcatgctcttcatgtacatgt 1034
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                      
Query: 351     agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgt 405
               ||||||||||| || || || || || ||||||||||||||||||||||||||||
Sbjct: 4863126 agcttcatctttgcaagggattcagtaaactgctgcatgctcttcatgtacatgt 4863180



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 181     cttagaagaaggctcggcttccgtagaa 208
               ||||||||||||||| |||||| |||||
Sbjct: 4863004 cttagaagaaggctctgcttccatagaa 4863031
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>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                     
Query: 351    agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgt 405
              ||||||||||| || || || || || ||||||||||||||||||||||||||||
Sbjct: 132421 agcttcatctttgcaagggattcagtaaactgctgcatgctcttcatgtacatgt 132367



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 181    cttagaagaaggctcggcttccgtagaa 208
              ||||||||||||||| |||||| |||||
Sbjct: 132543 cttagaagaaggctctgcttccatagaa 132516
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                      
Query: 351     agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgt 405
               ||||||||||| || || || || || ||||||||||||||||||||||||||||
Sbjct: 4862341 agcttcatctttgcaagggattcagtaaactgctgcatgctcttcatgtacatgt 4862395



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 181     cttagaagaaggctcggcttccgtagaa 208
               ||||||||||||||| |||||| |||||
Sbjct: 4862219 cttagaagaaggctctgcttccatagaa 4862246
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>dbj|AK073045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033007C02, full
            insert sequence
          Length = 1557

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 351  agcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgtacatgt 405
            ||||||||||| || || || || || ||||||||||||||||||||||||||||
Sbjct: 1251 agcttcatctttgcaagggattcagtaaactgctgcatgctcttcatgtacatgt 1197



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 181  cttagaagaaggctcggcttccgtagaa 208
            ||||||||||||||| |||||| |||||
Sbjct: 1373 cttagaagaaggctctgcttccatagaa 1346
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>gb|BT020521.1| Arabidopsis thaliana At5g55530 gene, complete cds
          Length = 1218

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1107 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1048

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1047 catgtc 1042
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>ref|NM_203207.1| Arabidopsis thaliana unknown protein AT5G55530 transcript variant
            AT5G55530.3 mRNA, complete cds
          Length = 1634

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1223 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1164

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1163 catgtc 1158
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>ref|NM_124935.2| Arabidopsis thaliana unknown protein AT5G55530 transcript variant
            AT5G55530.1 mRNA, complete cds
          Length = 1740

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1329 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1270

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1269 catgtc 1264
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>ref|NM_203206.1| Arabidopsis thaliana unknown protein AT5G55530 transcript variant
            AT5G55530.2 mRNA, complete cds
          Length = 1662

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1251 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1192

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1191 catgtc 1186
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>emb|BX831223.1|CNS09ZIP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS69ZG07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1460

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1245 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1186

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1185 catgtc 1180
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>emb|BX831182.1|CNS09ZEC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS66ZE10 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1467

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1223 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1164

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1163 catgtc 1158
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>emb|BX829589.1|CNS09YOH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB23ZA09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1525

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1251 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1192

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1191 catgtc 1186
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>gb|BT004310.1| Arabidopsis thaliana clone RAFL15-32-E21 (R50090) unknown protein
            (At5g55530) mRNA, complete cds
          Length = 1610

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1314 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1255

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1254 catgtc 1249
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>dbj|AB015479.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTE17
          Length = 80675

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                         
Query: 341   gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
             |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 71344 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 71285

                   
Query: 401   catgtc 406
             ||||||
Sbjct: 71284 catgtc 71279
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>gb|BT021091.1| Arabidopsis thaliana At5g55530 gene, complete cds
          Length = 1270

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| ||||| || || || ||||| |||||||| ||||||||
Sbjct: 1116 gtccagaggaagcttcatcttagccagtgaatctgtaaactgttgcatgcttttcatgta 1057

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1056 catgtc 1051
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>emb|BX832642.1|CNS09ZM1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH86ZD08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1470

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 341  gtccagcgggagcttcatcttggccagcgactccgtgaactgctgcatgctcttcatgta 400
            |||||| || ||||||||||| |||||  | || || ||||| |||||||| ||||||||
Sbjct: 1237 gtccagaggaagcttcatcttagccagttaatctgtaaactgttgcatgcttttcatgta 1178

                  
Query: 401  catgtc 406
            ||||||
Sbjct: 1177 catgtc 1172
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 290    gggcgaggcggcggcggggccg 311
              ||||||||||||||||||||||
Sbjct: 192197 gggcgaggcggcggcggggccg 192176
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                           
Query: 293    cgaggcggcg-gcggggccgctcccgctc 320
              |||||||||| ||||||||||||||||||
Sbjct: 133206 cgaggcggcgcgcggggccgctcccgctc 133234
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                           
Query: 293    cgaggcggcg-gcggggccgctcccgctc 320
              |||||||||| ||||||||||||||||||
Sbjct: 342142 cgaggcggcgcgcggggccgctcccgctc 342170
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>ref|XM_824295.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.4890)
           partial mRNA
          Length = 909

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 311 gctcccgctcttgtcgctgcc 331
           |||||||||||||||||||||
Sbjct: 774 gctcccgctcttgtcgctgcc 754
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                           
Query: 293    cgaggcggcg-gcggggccgctcccgctc 320
              |||||||||| ||||||||||||||||||
Sbjct: 116840 cgaggcggcgcgcggggccgctcccgctc 116868
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 61     acgaagcctaaataaaacaac 81
              |||||||||||||||||||||
Sbjct: 736398 acgaagcctaaataaaacaac 736378
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>gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromosome unknown, complete
              sequence
          Length = 214968

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 290    gggcgaggcggcggcggggcc 310
              |||||||||||||||||||||
Sbjct: 186283 gggcgaggcggcggcggggcc 186303
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>ref|NM_129360.2| Arabidopsis thaliana CAC3; acetyl-CoA carboxylase AT2G38040 (CAC3)
            transcript variant AT2G38040.1 mRNA, complete cds
          Length = 2937

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gaaggctcggcttccgtaga 207
            ||||||||||||||||||||
Sbjct: 1667 gaaggctcggcttccgtaga 1648
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>ref|NM_179960.1| Arabidopsis thaliana CAC3; acetyl-CoA carboxylase AT2G38040 (CAC3)
            transcript variant AT2G38040.2 mRNA, complete cds
          Length = 2945

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gaaggctcggcttccgtaga 207
            ||||||||||||||||||||
Sbjct: 1667 gaaggctcggcttccgtaga 1648
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
              sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     taaataaaacaacagcatgagaaa 92
              ||||||| ||||||||||||||||
Sbjct: 108745 taaataatacaacagcatgagaaa 108768
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>gb|AF056970.1| Arabidopsis thaliana carboxyltransferase alpha subunit (CAC3) gene,
            nuclear gene encoding chloroplast protein, complete cds
          Length = 6280

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gaaggctcggcttccgtaga 207
            ||||||||||||||||||||
Sbjct: 4577 gaaggctcggcttccgtaga 4558
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>gb|AF056969.1| Arabidopsis thaliana carboxyltransferase alpha subunit (CAC3) mRNA,
            nuclear gene encoding chloroplast protein, complete cds
          Length = 2852

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gaaggctcggcttccgtaga 207
            ||||||||||||||||||||
Sbjct: 1623 gaaggctcggcttccgtaga 1604
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>gb|AC125173.3| Mus musculus BAC clone RP24-492I6 from chromosome 19, complete sequence
          Length = 149795

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    gaagcctaaataaaacaacagcat 86
             ||||||||| ||||||||||||||
Sbjct: 26231 gaagcctaattaaaacaacagcat 26254
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>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence
          Length = 135940

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   catgtccatgatctccttct 420
             ||||||||||||||||||||
Sbjct: 23734 catgtccatgatctccttct 23715
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 293    cgaggcggcggcggggccgctccc 316
              ||||||||||||||||| ||||||
Sbjct: 246706 cgaggcggcggcggggcggctccc 246729
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>gb|AC009754.10| Homo sapiens chromosome 15 clone RP11-519C12 map 15q21.2, complete
            sequence
          Length = 217319

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  gcgaggcggcggcggggccg 311
            ||||||||||||||||||||
Sbjct: 9142 gcgaggcggcggcggggccg 9123
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>gb|AC025917.8| Homo sapiens chromosome 15 clone RP11-23N2 map 15q21, complete sequence
          Length = 149091

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   gcgaggcggcggcggggccg 311
             ||||||||||||||||||||
Sbjct: 73702 gcgaggcggcggcggggccg 73683
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     gaagaaggctcggcttccgt 204
               ||||||||||||||||||||
Sbjct: 1826359 gaagaaggctcggcttccgt 1826340
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>dbj|AK221200.1| Arabidopsis thaliana mRNA for carboxyltransferase alpha subunit,
            complete cds, clone: RAFL23-06-A22
          Length = 2943

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  gaaggctcggcttccgtaga 207
            ||||||||||||||||||||
Sbjct: 1692 gaaggctcggcttccgtaga 1673
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 289      tgggcgaggcggcggcggggccgc 312
                |||||||||||||||||| |||||
Sbjct: 17505888 tgggcgaggcggcggcggcgccgc 17505865
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     tcgccgccgcgctcgagtcg 272
               ||||||||||||||||||||
Sbjct: 3393525 tcgccgccgcgctcgagtcg 3393544
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>gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II section 205 of 255 of the complete
             sequence. Sequence from clones F13M22, T8P21, F16M14
          Length = 95612

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   gaaggctcggcttccgtaga 207
             ||||||||||||||||||||
Sbjct: 82953 gaaggctcggcttccgtaga 82934
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>emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in linkage group 15,
              complete sequence
          Length = 185137

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tcagctgagactgatgactg 141
              ||||||||||||||||||||
Sbjct: 101422 tcagctgagactgatgactg 101441
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 253    tcgccgccgcgctcgagtcggtgc 276
              |||||||||||| |||||||||||
Sbjct: 164960 tcgccgccgcgcccgagtcggtgc 164983
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 289      tgggcgaggcggcggcggggccgc 312
                |||||||||||||||||| |||||
Sbjct: 17460259 tgggcgaggcggcggcggcgccgc 17460236
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>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129619

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   tgggcgaggcggcggcggggccgc 312
             |||||||||||||||||| |||||
Sbjct: 26518 tgggcgaggcggcggcggcgccgc 26541
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>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE
          Length = 106640

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   catgtccatgatctccttct 420
             ||||||||||||||||||||
Sbjct: 43894 catgtccatgatctccttct 43913


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,684,038
Number of Sequences: 3902068
Number of extensions: 4684038
Number of successful extensions: 98875
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97384
Number of HSP's gapped (non-prelim): 1484
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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