ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd1h19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 163 bits (82), Expect = 4e-37 Identities = 82/82 (100%) Strand = Plus / Plus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68237 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 68296 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 68297 tggaacccatcctagatcgatg 68318 Score = 89.7 bits (45), Expect = 5e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||| Sbjct: 68334 caactccaaatgaacaatcaaagcgctcgcgtcaagtaaccattacgtgtacctgcaact 68393 Query: 161 g 161 | Sbjct: 68394 g 68394 Score = 79.8 bits (40), Expect = 4e-12 Identities = 87/96 (90%), Gaps = 5/96 (5%) Strand = Plus / Plus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 69688 ctgagatcccgcttggaagaagaatgcctccgtg-aag-cagacgaaccgacgtagtcga 69745 Query: 219 ac-ggtcctcac-atccgacacgcttgcggaactct 252 || ||||||||| ||||| ||||| ||||||||||| Sbjct: 69746 acgggtcctcacaatccggcacgc-tgcggaactct 69780
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 163 bits (82), Expect = 4e-37 Identities = 82/82 (100%) Strand = Plus / Plus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64933 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 64992 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 64993 tggaacccatcctagatcgatg 65014 Score = 109 bits (55), Expect = 5e-21 Identities = 88/95 (92%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 ||||||||| |||||||||||||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 66389 ctgagatcctgcttggaagaagaatgcctccgtg-aag-cagacgaaccgacgtagtcga 66446 Query: 219 acgg-tcctcacatccgacacgcttgcggaactct 252 |||| |||||||||||||||||||||||||||||| Sbjct: 66447 acgggtcctcacatccgacacgcttgcggaactct 66481 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||||||||||||||| ||||||| || ||||| ||| ||||||||||||||| Sbjct: 65036 caactccaaatgaacaatcaacacgctcgcatcaagtaatcttagcctgtacctgcaact 65095 Query: 161 g 161 | Sbjct: 65096 g 65096
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 163 bits (82), Expect = 4e-37 Identities = 82/82 (100%) Strand = Plus / Plus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102865 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 102924 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 102925 tggaacccatcctagatcgatg 102946 Score = 89.7 bits (45), Expect = 5e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct: 102965 caacttcaaatgaacaatcaacgcgctcacgtcaaataacctttacctgtacctgcaact 103024 Query: 161 g 161 | Sbjct: 103025 g 103025 Score = 48.1 bits (24), Expect = 0.016 Identities = 83/96 (86%), Gaps = 5/96 (5%) Strand = Plus / Plus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||| ||||||||||| | ||||| ||| || |||||||||||||| ||| Sbjct: 104340 ctgagatcccgcctggaagaagaacaactccgtg-aag-cagacgaaccgacgtagtcga 104397 Query: 219 ac-ggtcctcac-atccgacacgcttgcggaactct 252 || ||||||||| ||||| ||||| ||||||||||| Sbjct: 104398 acgggtcctcacaatccggcacgc-tgcggaactct 104432
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 163 bits (82), Expect = 4e-37 Identities = 82/82 (100%) Strand = Plus / Plus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16463 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 16522 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 16523 tggaacccatcctagatcgatg 16544 Score = 113 bits (57), Expect = 3e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 16563 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 16622 Query: 161 g 161 | Sbjct: 16623 g 16623 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| |||| ||| | |||||||||||||| ||| Sbjct: 17918 ctgagatcccgcttggaagaagaatgcctgcgtg-aag-ctgacgaaccgacgtagtcga 17975 Query: 219 ac-ggtcctcaca 230 || |||||||||| Sbjct: 17976 acgggtcctcaca 17988
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 163 bits (82), Expect = 4e-37 Identities = 82/82 (100%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10467 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 10408 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 10407 tggaacccatcctagatcgatg 10386 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||| Sbjct: 10367 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 10308 Query: 161 g 161 | Sbjct: 10307 g 10307
>dbj|AB014756.1| Hordeum vulgare insertion sequence in a copia-like retroelement BARE-1, gypsy-type retrotransposon BARE-100 DNA, solo-LTR sequence Length = 3130 Score = 163 bits (82), Expect = 4e-37 Identities = 82/82 (100%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2910 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 2851 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 2850 tggaacccatcctagatcgatg 2829 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||| Sbjct: 2810 caactccaaatgaacaatcaatgcgctcgtgtcaaataacctttacatgtacctgcaact 2751 Query: 161 g 161 | Sbjct: 2750 g 2750
>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal repeat, complete sequence Length = 7575 Score = 155 bits (78), Expect = 9e-35 Identities = 81/82 (98%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 4107 gacgaaaacaaacgacaaaagaagaacgacatccatccttgctatcccaggctgccggcc 4048 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 4047 tggaacccatcctagatcgatg 4026 Score = 105 bits (53), Expect = 8e-20 Identities = 59/61 (96%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 161 g 161 | Sbjct: 3947 g 3947 Score = 95.6 bits (48), Expect = 7e-17 Identities = 88/96 (91%), Gaps = 4/96 (4%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtg-aag-cagacgaaccgacgtagtcga 2598 Query: 219 acg-gtcctcac-atccgacacgcttgcggaactct 252 ||| |||||||| ||||| ||||||||||||||||| Sbjct: 2597 acgagtcctcacaatccggcacgcttgcggaactct 2562
>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial and complete sequences Length = 11820 Score = 155 bits (78), Expect = 9e-35 Identities = 81/82 (98%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 4107 gacgaaaacaaacgacaaaagaagaacgacatccatccttgctatcccaggctgccggcc 4048 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 4047 tggaacccatcctagatcgatg 4026 Score = 133 bits (67), Expect = 3e-28 Identities = 80/83 (96%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaag-aagaacgacgtccatccttgctatcccaggctgccggc 59 ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 11645 gacgaaaacaaacgagaaaaataagaacgacgtccatccttgctatcccaggctgccggc 11586 Query: 60 ctggaacccatcctagatcgatg 82 ||||||||||||||||||||||| Sbjct: 11585 ctggaacccatcctagatcgatg 11563 Score = 113 bits (57), Expect = 3e-22 Identities = 60/61 (98%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 11547 caactccaaatgaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 11488 Query: 161 g 161 | Sbjct: 11487 g 11487 Score = 105 bits (53), Expect = 8e-20 Identities = 59/61 (96%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 161 g 161 | Sbjct: 3947 g 3947 Score = 95.6 bits (48), Expect = 7e-17 Identities = 88/96 (91%), Gaps = 4/96 (4%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtg-aag-cagacgaaccgacgtagtcga 2598 Query: 219 acg-gtcctcac-atccgacacgcttgcggaactct 252 ||| |||||||| ||||| ||||||||||||||||| Sbjct: 2597 acgagtcctcacaatccggcacgcttgcggaactct 2562 Score = 56.0 bits (28), Expect = 6e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 221 ggtcctcacatccgacacgcttgcggaactct 252 ||||||||| |||||||||||||||||||||| Sbjct: 10125 ggtcctcacttccgacacgcttgcggaactct 10094 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 160 tgagatcccgcttggaagaagaa 182 ||||||||||||||||||||||| Sbjct: 10185 tgagatcccgcttggaagaagaa 10163
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 155 bits (78), Expect = 9e-35 Identities = 81/82 (98%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327073 gacgaaaacaaacgagaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 327014 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 327013 tggaacccatcctagatcgatg 326992 Score = 141 bits (71), Expect = 1e-30 Identities = 77/79 (97%) Strand = Plus / Minus Query: 4 gaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctgg 63 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 131470 gaaaacaaacgagaaaagaagaacgacgtccatccttgctatcccaggctgccgccctgg 131411 Query: 64 aacccatcctagatcgatg 82 ||||||||||||||||||| Sbjct: 131410 aacccatcctagatcgatg 131392 Score = 99.6 bits (50), Expect = 5e-18 Identities = 83/90 (92%), Gaps = 3/90 (3%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||| | ||||| ||| || |||||||||||||| ||| Sbjct: 130044 ctgagatcccgcttggaagaagaatgtctccgtg-aag-cacacgaaccgacgtagtcga 129987 Query: 219 acgg-tcctcacatccgacacgcttgcgga 247 |||| ||||||||||||||||||||||||| Sbjct: 129986 acgggtcctcacatccgacacgcttgcgga 129957 Score = 97.6 bits (49), Expect = 2e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| Sbjct: 326973 caactccaaatgaacaatcaacacgctcgcatcaagtaacctttacctgtacctgcaact 326914 Query: 161 g 161 | Sbjct: 326913 g 326913 Score = 89.7 bits (45), Expect = 5e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||||||| Sbjct: 131376 caactccaaatgaacaatcaacgcgctcacgtcaagtgacctttacatgtacctgcaact 131317 Query: 161 g 161 | Sbjct: 131316 g 131316 Score = 85.7 bits (43), Expect = 7e-14 Identities = 81/90 (90%), Gaps = 3/90 (3%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||| | ||||| ||| | |||||||||||||| ||| Sbjct: 177377 ctgagatcccgcttggaagaagaatgtctccgtg-aaga-acacgaaccgacgtagtcga 177320 Query: 219 acgg-tcctcacatccgacacgcttgcgga 247 | || ||||||||||||||||||||||||| Sbjct: 177319 atgggtcctcacatccgacacgcttgcgga 177290 Score = 52.0 bits (26), Expect = 0.001 Identities = 49/54 (90%), Gaps = 2/54 (3%) Strand = Plus / Minus Query: 201 acgaaccgacgtagccgaacgg-tcctcacat-ccgacacgcttgcggaactct 252 ||||||| |||||| ||||||| ||||||||| |||||||||||||| |||||| Sbjct: 325559 acgaaccaacgtagtcgaacgggtcctcacattccgacacgcttgcgaaactct 325506
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 151 bits (76), Expect = 1e-33 Identities = 76/76 (100%) Strand = Plus / Plus Query: 5 aaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctgga 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3407 aaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcctgga 3466 Query: 65 acccatcctagatcga 80 |||||||||||||||| Sbjct: 3467 acccatcctagatcga 3482 Score = 117 bits (59), Expect = 2e-23 Identities = 89/95 (93%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 4859 ctgagatcccgcttggaagaagaatgcctccgtg-aag-cagacgaaccgacgtagtcga 4916 Query: 219 acgg-tcctcacatccgacacgcttgcggaactct 252 |||| |||||||||||||||||||||||||||||| Sbjct: 4917 acgggtcctcacatccgacacgcttgcggaactct 4951 Score = 97.6 bits (49), Expect = 2e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct: 3503 caactccagatgaacaatcaacgcgctcacgtcgaataacctttacctgtacctgcaact 3562 Query: 161 g 161 | Sbjct: 3563 g 3563
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 147 bits (74), Expect = 2e-32 Identities = 80/82 (97%) Strand = Plus / Minus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 10986 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatccgagggtgccggcc 10927 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 10926 tggaacccatcctagatcgatg 10905 Score = 101 bits (51), Expect = 1e-18 Identities = 87/95 (91%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||| ||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 9538 ctgagatcccgcttggaagaggaatgcctccgtg-aag-cagacgaaccgacgtagtcga 9481 Query: 219 acgg-tcctcacatccgacacgcttgcggaactct 252 |||| |||||||||||||||||||||| ||||||| Sbjct: 9480 acgggtcctcacatccgacacgcttgcagaactct 9446 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||| Sbjct: 10886 caactccaaatgaacaatcaacgcgctcacgtgaagtaccatttacctgtacctgcaact 10827 Query: 161 g 161 | Sbjct: 10826 g 10826
>gb|AY187024.1| Hordeum vulgare subsp. vulgare phosphate transporter HvPT4 gene, complete cds Length = 6561 Score = 131 bits (66), Expect = 1e-27 Identities = 78/82 (95%) Strand = Plus / Plus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2635 gacgaaaacaaccgagaaaagaagaacgacgtccatccttgctatcccaggctgccggtc 2694 Query: 61 tggaacccatcctagatcgatg 82 ||||||||||||||||| |||| Sbjct: 2695 tggaacccatcctagattgatg 2716 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 ||||||||||| ||||||| ||||||||||||| |||||||||||| ||||| ||||||| Sbjct: 2762 caactccaaataaacaatccacgcgctcgcgtcaagtaacctttacatgtacttgcaact 2821 Query: 161 g 161 | Sbjct: 2822 g 2822
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 123 bits (62), Expect = 3e-25 Identities = 78/82 (95%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 1 gacgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcc 60 ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| Sbjct: 37373 gacgaaaacaaacgagaaaatga-aacgacgtccatccttgctatcccaggctgccggcc 37431 Query: 61 tggaacccatcctagatcgatg 82 |||||||||||||||||||||| Sbjct: 37432 tggaacccatcctagatcgatg 37453 Score = 97.6 bits (49), Expect = 2e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct: 37472 caactcaaaatgaacaatcagcgcgctcgcgtcaagtaacctttacctgtacctgcaact 37531 Query: 161 g 161 | Sbjct: 37532 g 37532 Score = 95.6 bits (48), Expect = 7e-17 Identities = 88/96 (91%), Gaps = 4/96 (4%) Strand = Plus / Plus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| ||||| ||| || |||||| ||||||| ||| Sbjct: 38836 ctgagatcccgcttggaagaagaatgcctccgtg-aag-cagacgaactgacgtagtcga 38893 Query: 219 ac-ggtcctcac-atccgacacgcttgcggaactct 252 || ||||||||| ||||||||||||||||||||||| Sbjct: 38894 acgggtcctcacaatccgacacgcttgcggaactct 38929
>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence Length = 7674 Score = 115 bits (58), Expect = 8e-23 Identities = 58/58 (100%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatg 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4083 aacgacgtccatccttgctatcccaggctgccggcctggaacccatcctagatcgatg 4026 Score = 105 bits (53), Expect = 8e-20 Identities = 59/61 (96%) Strand = Plus / Minus Query: 101 caactccaaatgaacaatcaacgcgctcgcgtcgagtaacctttacctgtacctgcaact 160 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 4007 caactccaaaagaacaatcaacgcgctcgcgtcaagtaacctttacctgtacctgcaact 3948 Query: 161 g 161 | Sbjct: 3947 g 3947 Score = 95.6 bits (48), Expect = 7e-17 Identities = 88/96 (91%), Gaps = 4/96 (4%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 |||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| ||| Sbjct: 2655 ctgagatcccgcttggaagaagaatgcctccgtg-aag-cagacgaaccgacgtagtcga 2598 Query: 219 acg-gtcctcac-atccgacacgcttgcggaactct 252 ||| |||||||| ||||| ||||||||||||||||| Sbjct: 2597 acgagtcctcacaatccggcacgcttgcggaactct 2562
>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic sequence Length = 3124 Score = 113 bits (57), Expect = 3e-22 Identities = 74/79 (93%), Gaps = 3/79 (3%) Strand = Plus / Minus Query: 2 acgaaaacaaacgacaaaagaagaacgacgtccatccttgctatcccaggctgccggcct 61 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 2315 acgaaaacaaacgataaaagaa---cgacgtccatccttgctatcccaggctgccgacct 2259 Query: 62 ggaacccatcctagatcga 80 ||||||||||||||||||| Sbjct: 2258 ggaacccatcctagatcga 2240 Score = 63.9 bits (32), Expect = 3e-07 Identities = 84/96 (87%), Gaps = 4/96 (4%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 ||||||||| |||||||||||||| | ||||| ||| || ||||||| |||||||||| Sbjct: 865 ctgagatcctgcttggaagaagaacgaatccgtg-aag-cagacgaaccaacgtagccga 808 Query: 219 acgg-tcctcaca-tccgacacgcttgcggaactct 252 |||| |||||||| ||||||||||||||| |||||| Sbjct: 807 acggttcctcacattccgacacgcttgcgaaactct 772 Score = 44.1 bits (22), Expect = 0.24 Identities = 53/62 (85%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 102 aactccaaatgaacaatcaacgcgctcgcgtc-gagtaacctttacctgtacctgcaact 160 ||||||||||||||||||| |||| | |||| | || ||||||| ||||||||||||| Sbjct: 2220 aactccaaatgaacaatcatcgcgtgcacgtcttaatatcctttacatgtacctgcaact 2161 Query: 161 ga 162 || Sbjct: 2160 ga 2159
>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7731 Score = 73.8 bits (37), Expect = 3e-10 Identities = 47/49 (95%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgccggcctggaacccatcctagatcga 80 ||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 4185 tccatccttgctatcccaggctgcc-gcctggaacccatcctatatcga 4138 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaa 182 |||||||||||||||||||||||| Sbjct: 2787 ctgagatcccgcttggaagaagaa 2764
>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7586 Score = 67.9 bits (34), Expect = 2e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 33 ccatccttgctatcccaggctgccggcctggaacccatcctagatc 78 |||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 3985 ccatccttgctatcccaggctgcc-gcctggaacccatcctggatc 3941 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 161 gagatcccgcttggaagaagaa 182 |||||||||||||||||||||| Sbjct: 2583 gagatcccgcttggaagaagaa 2562
>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic sequence Length = 7321 Score = 63.9 bits (32), Expect = 3e-07 Identities = 84/96 (87%), Gaps = 4/96 (4%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaatgcccccgtgnaagncaaacgaaccgacgtagccga 218 ||||||||| |||||||||||||| | ||||| ||| || ||||||| |||||||||| Sbjct: 6094 ctgagatcctgcttggaagaagaacgaatccgtg-aag-cagacgaaccaacgtagccga 6037 Query: 219 acgg-tcctcaca-tccgacacgcttgcggaactct 252 |||| |||||||| ||||||||||||||| |||||| Sbjct: 6036 acggttcctcacattccgacacgcttgcgaaactct 6001
>gb|AF453683.1| Triticum turgidum subsp. durum isolate TD1 Sukkula retrotransposon, partial sequence Length = 4001 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453679.1| Triticum turgidum subsp. dicoccoides isolate TC3 Sukkula retrotransposon, partial sequence Length = 3935 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453678.1| Triticum turgidum isolate TC4 Sukkula retrotransposon, partial sequence Length = 3997 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453674.1| Triticum aestivum isolate TAEST Sukkula retrotransposon, partial sequence Length = 4120 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453669.1| Secale cereale isolate SC1 Sukkula retrotransposon, partial sequence Length = 2924 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453668.1| Secale cereale isolate SC2 Sukkula retrotransposon, partial sequence Length = 2923 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453663.1| Hordeum patagonicum isolate HPA2 Sukkula retrotransposon, partial sequence Length = 3862 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 25 aacgacgtccatccttgctatcccaggctgc 55 |||||| |||||||||||||||||||||||| Sbjct: 31 aacgacatccatccttgctatcccaggctgc 1
>gb|AF453670.1| Hordeum roshevitzii isolate Hroshevitzii Sukkula retrotransposon, partial sequence Length = 3434 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453667.1| Hordeum patagonicum isolate HPA1 Sukkula retrotransposon, partial sequence Length = 3698 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453666.1| Hordeum patagonicum isolate HPA5 Sukkula retrotransposon, partial sequence Length = 3804 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453664.1| Hordeum patagonicum isolate Hpa3 Sukkula retrotransposon, partial sequence Length = 3943 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453662.1| Elymus repens isolate Ely3 Sukkula retrotransposon, partial sequence Length = 3622 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453660.1| Hordeum euclaston isolate He1 Sukkula retrotransposon, partial sequence Length = 3764 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453659.1| Hordeum euclaston isolate He3 Sukkula retrotransposon, partial sequence Length = 3774 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AF453658.1| Elymus repens isolate Ely1 Sukkula retrotransposon, partial sequence Length = 3613 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AY069967.1| Hordeum erectifolium clone hele412 retrotransposon sukkula, complete sequence Length = 3695 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AY069966.1| Hordeum erectifolium clone hele410 retrotransposon sukkula, complete sequence Length = 3683 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgc 55 |||||||||||||||||||||||| Sbjct: 24 tccatccttgctatcccaggctgc 1
>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long terminal repeat, complete sequence Length = 7919 Score = 46.1 bits (23), Expect = 0.062 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 32 tccatccttgctatcccaggctgccggcctggaacccatccta 74 |||||||||||||||| |||||||| |||| ||| |||||||| Sbjct: 4297 tccatccttgctatcctaggctgcc-gcctagaatccatccta 4256 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 ctgagatcccgcttggaagaagaa 182 ||||||||||||| |||||||||| Sbjct: 2873 ctgagatcccgctcggaagaagaa 2850
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tccttgctatcccaggctgcc 56 ||||||||||||||||||||| Sbjct: 170021 tccttgctatcccaggctgcc 170001
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence Length = 168864 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tccttgctatcccaggctgcc 56 ||||||||||||||||||||| Sbjct: 20040 tccttgctatcccaggctgcc 20020
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aaaacaaacgacaaaagaaga 25 ||||||||||||||||||||| Sbjct: 44586 aaaacaaacgacaaaagaaga 44606
>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete sequence Length = 305900 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aaaacaaacgacaaaagaaga 25 ||||||||||||||||||||| Sbjct: 220564 aaaacaaacgacaaaagaaga 220584
>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete sequence Length = 65196 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaaacaaacgacaaaagaaga 25 ||||||||||||||||||||| Sbjct: 59190 aaaacaaacgacaaaagaaga 59170
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 aactccaaatgaacaatcaa 121 |||||||||||||||||||| Sbjct: 403914 aactccaaatgaacaatcaa 403933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,684,888 Number of Sequences: 3902068 Number of extensions: 1684888 Number of successful extensions: 27536 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27400 Number of HSP's gapped (non-prelim): 111 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
