ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1h18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188684.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
2dbj|AK110682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6ref|NM_188682.1| Oryza sativa (japonica cultivar-group), Ozsa828... 50 0.007
7ref|XM_747898.1| Aspergillus fumigatus Af293 alpha-glucosidase B... 42 1.7
8gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 1.7
9ref|XM_800152.1| Trypanosoma cruzi strain CL Brener EF-hand prot... 40 6.6
10gb|BC059338.1| Xenopus laevis hypothetical protein MGC69090, mRN... 40 6.6
11dbj|AB226463.1| Aspergillus oryzae cDNA, contig sequence: AoEST3325 40 6.6
12dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 6.6
13gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete g... 40 6.6
14emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in l... 40 6.6
15gb|L01584.1|TRBCBPB Trypanosoma cruzi calcium-binding protein (C... 40 6.6 
>ref|NM_188684.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 933

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 224 cgtcgagtgcaccatcgccagctgaaagttgagagggaacggagcctcttg 274
           |||||||||||||||||||||||||||||| |  |||||||| ||||||||
Sbjct: 807 cgtcgagtgcaccatcgccagctgaaagttcaccgggaacggtgcctcttg 757
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>dbj|AK110682.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-H05, full
           insert sequence
          Length = 571

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 224 cgtcgagtgcaccatcgccagctgaaagttgagagggaacggagcctcttg 274
           |||||||||||||||||||||||||||||| |  |||||||| ||||||||
Sbjct: 170 cgtcgagtgcaccatcgccagctgaaagttcaccgggaacggtgcctcttg 120
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                
Query: 224     cgtcgagtgcaccatcgccagctgaaagttgagagggaacggagcctct 272
               |||||||||||||||||||||||||||||| |  |||||||| ||||||
Sbjct: 7618483 cgtcgagtgcaccatcgccagctgaaagttcaccgggaacggtgcctct 7618531



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 411     gttcgtgggtcctccacggctcttatggtcagcatgctcatatccttntcgt 462
               ||||||||||||||| ||||| |||| |||| |  |||||||||||| ||||
Sbjct: 7602287 gttcgtgggtcctcctcggcttttattgtcaccgcgctcatatccttatcgt 7602338



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 227     cgagtgcaccatcgccagctgaaagttgagagggaacgg 265
               ||||||||| || |||| |||||||||||| ||||||||
Sbjct: 7601946 cgagtgcactatggccaactgaaagttgagcgggaacgg 7601984
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>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0086P08
          Length = 145312

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 224   cgtcgagtgcaccatcgccagctgaaagttgagagggaacggagcctct 272
             |||||||||||||||||||||||||||||| |  |||||||| ||||||
Sbjct: 29059 cgtcgagtgcaccatcgccagctgaaagttcaccgggaacggtgcctct 29107



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 411   gttcgtgggtcctccacggctcttatggtcagcatgctcatatccttntcgt 462
             ||||||||||||||| ||||| |||| |||| |  |||||||||||| ||||
Sbjct: 12863 gttcgtgggtcctcctcggcttttattgtcaccgcgctcatatccttatcgt 12914



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 227   cgagtgcaccatcgccagctgaaagttgagagggaacgg 265
             ||||||||| || |||| |||||||||||| ||||||||
Sbjct: 12522 cgagtgcactatggccaactgaaagttgagcgggaacgg 12560
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>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0708G02
          Length = 168976

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                               
Query: 224    cgtcgagtgcaccatcgccagctgaaagttgagagggaacggagcctct 272
              |||||||||||||||||||||||||||||| |  |||||||| ||||||
Sbjct: 167275 cgtcgagtgcaccatcgccagctgaaagttcaccgggaacggtgcctct 167323



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                  
Query: 411    gttcgtgggtcctccacggctcttatggtcagcatgctcatatccttntcgt 462
              ||||||||||||||| ||||| |||| |||| |  |||||||||||| ||||
Sbjct: 151079 gttcgtgggtcctcctcggcttttattgtcaccgcgctcatatccttatcgt 151130



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 227    cgagtgcaccatcgccagctgaaagttgagagggaacgg 265
              ||||||||| || |||| |||||||||||| ||||||||
Sbjct: 150738 cgagtgcactatggccaactgaaagttgagcgggaacgg 150776
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>ref|NM_188682.1| Oryza sativa (japonica cultivar-group), Ozsa8285 predicted mRNA
          Length = 906

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 411 gttcgtgggtcctccacggctcttatggtcagcatgctcatatccttntcgt 462
           ||||||||||||||| ||||| |||| |||| |  |||||||||||| ||||
Sbjct: 602 gttcgtgggtcctcctcggcttttattgtcaccgcgctcatatccttatcgt 551



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 227 cgagtgcaccatcgccagctgaaagttgagagggaacgg 265
           ||||||||| || |||| |||||||||||| ||||||||
Sbjct: 789 cgagtgcactatggccaactgaaagttgagcgggaacgg 751
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>ref|XM_747898.1| Aspergillus fumigatus Af293 alpha-glucosidase B (Afu1g16250) partial
            mRNA
          Length = 2646

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 173  cacgctgacggccgggtcaac 193
            |||||||||||||||||||||
Sbjct: 1059 cacgctgacggccgggtcaac 1039
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 324   ttgccggttttcttctccagg 344
             |||||||||||||||||||||
Sbjct: 91262 ttgccggttttcttctccagg 91282
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>ref|XM_800152.1| Trypanosoma cruzi strain CL Brener EF-hand protein 5
           (Tc00.1047053506391.30) partial mRNA
          Length = 627

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  atgatacgatggcagatgaa 54
           ||||||||||||||||||||
Sbjct: 398 atgatacgatggcagatgaa 417
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>gb|BC059338.1| Xenopus laevis hypothetical protein MGC69090, mRNA (cDNA clone
           MGC:69090 IMAGE:4969181), complete cds
          Length = 2331

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 338 ctccaggagatggacgagctggcc 361
           ||||||||| ||||||||||||||
Sbjct: 326 ctccaggagctggacgagctggcc 349
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>dbj|AB226463.1| Aspergillus oryzae cDNA, contig sequence: AoEST3325
          Length = 810

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gatggacgagctggccaaaa 365
           ||||||||||||||||||||
Sbjct: 86  gatggacgagctggccaaaa 67
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 346     gatggacgagctggccaaaa 365
               ||||||||||||||||||||
Sbjct: 1456062 gatggacgagctggccaaaa 1456043
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>gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete genome
          Length = 135611

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  agtgcctctcgaatgtcttg 326
            ||||||||||||||||||||
Sbjct: 8395 agtgcctctcgaatgtcttg 8376
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>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete
             sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 419   gtcctccacggctcttatggtcag 442
             ||||||||||||| ||||||||||
Sbjct: 17207 gtcctccacggcttttatggtcag 17184
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>gb|L01584.1|TRBCBPB Trypanosoma cruzi calcium-binding protein (CUB2.8) gene, complete
           cds
          Length = 1513

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  atgatacgatggcagatgaa 54
           ||||||||||||||||||||
Sbjct: 855 atgatacgatggcagatgaa 874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,016,420
Number of Sequences: 3902068
Number of extensions: 3016420
Number of successful extensions: 49674
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49579
Number of HSP's gapped (non-prelim): 95
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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