ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC059295.1| Xenopus laevis hypothetical protein MGC68878, mRN... 1066 0.0
2gb|BC044100.1| Xenopus laevis LBP protein; likely ortholog of mo... 168 1e-38
3emb|AL954386.11| Zebrafish DNA sequence from clone CH211-242P18 ... 48 0.036
4gb|AC073215.5| Homo sapiens BAC clone RP11-501L9 from 2, complet... 42 2.2
5gb|AC061958.11|AC061958 Homo sapiens chromosome 3 clone RP11-6B7... 42 2.2
6emb|AJ341463.1|HSA341463 Homo sapiens genomic sequence surroundi... 42 2.2
7emb|AL928680.5| Mouse DNA sequence from clone RP23-396N6 on chro... 42 2.2
8gb|AC122364.4| Mus musculus chromosome 8 clone RP23-442K12, comp... 40 8.7
9ref|XM_464442.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
10gb|AE017263.1| Mesoplasma florum L1 complete genome 40 8.7
11gb|AY811067.1| Schistosoma japonicum SJCHGC03005 protein mRNA, p... 40 8.7
12gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome... 40 8.7
13gb|AC090330.22| Homo sapiens chromosome 18, clone RP11-813B21, c... 40 8.7
14gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, com... 40 8.7
15gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosom... 40 8.7
16emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chr... 40 8.7
17gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome... 40 8.7
18gb|AC132419.3| Mus musculus BAC clone RP23-252B17 from chromosom... 40 8.7
19gb|AC129177.3| Mus musculus BAC clone RP23-175A22 from 3, comple... 40 8.7
20gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, compl... 40 8.7
21emb|CR381538.9| Zebrafish DNA sequence from clone CH211-87B12 in... 40 8.7
22gb|AC110508.8| Mus musculus chromosome 3, clone RP23-382L1, comp... 40 8.7
23gb|AC116578.3| Mus musculus BAC clone RP23-264P8 from 9, complet... 40 8.7
24gb|AC115751.6| Mus musculus chromosome 1, clone RP23-16I21, comp... 40 8.7
25gb|AC122163.20| Medicago truncatula clone mth2-16l2, complete se... 40 8.7
26emb|AL591042.5| Human DNA sequence from clone RP11-480L11 on chr... 40 8.7
27emb|AL590547.3| Human DNA sequence from clone RP11-367A10 on chr... 40 8.7
28gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 8.7
29emb|AL354722.10| Human DNA sequence from clone RP11-744O14 on ch... 40 8.7
30gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C... 40 8.7
31emb|AL627383.5| Zebrafish DNA sequence from clone RP71-1O18 in l... 40 8.7
32emb|BX465223.9| Zebrafish DNA sequence from clone RP71-8E8 in li... 40 8.7
33emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 i... 40 8.7
34gb|AC090125.7| Homo sapiens chromosome 18, clone RP11-625N15, co... 40 8.7
35gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, co... 40 8.7
36emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in ... 40 8.7
37emb|BX322654.15| Zebrafish DNA sequence from clone DKEY-46G23 in... 40 8.7
38gb|AC103921.2| Homo sapiens chromosome 3 clone RP11-131O21, comp... 40 8.7
39gb|AC096919.3| Homo sapiens chromosome 3 clone RP11-611H10, comp... 40 8.7
40gb|AC090466.5| Homo sapiens chromosome 8, clone RP11-619O19, com... 40 8.7
41gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, compl... 40 8.7
42emb|BX322796.12| Zebrafish DNA sequence from clone DKEY-210F16 i... 40 8.7
43gb|AC158389.2| Mus musculus BAC clone RP24-476G13 from chromosom... 40 8.7
44gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosom... 40 8.7
45ref|NM_171688.2| Caenorhabditis elegans T23F2.2a (T23F2.2) mRNA,... 40 8.7
46ref|NM_171953.2| Caenorhabditis elegans T23F2.2b (T23F2.2) mRNA,... 40 8.7
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
48emb|BX323024.11| Zebrafish DNA sequence from clone DKEYP-2B10 in... 40 8.7
49emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in l... 40 8.7
50gb|AC155296.2| Mus musculus BAC clone RP24-303N23 from chromosom... 40 8.7
51gb|AC157519.2| Mus musculus BAC clone RP23-202O17 from chromosom... 40 8.7
52gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, com... 40 8.7
53gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chrom... 40 8.7
54gb|AC024901.29| Homo sapiens 12 BAC RP11-684M17 (Roswell Park Ca... 40 8.7
55emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in... 40 8.7
56dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
57dbj|AK064096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.7
58emb|CT033839.10| Zebrafish DNA sequence from clone CH73-91I15 in... 40 8.7
59emb|CR388177.16| Zebrafish DNA sequence from clone CH211-263C8 i... 40 8.7
60gb|AC005853.1|AC005853 Homo sapiens clone UWGC:g1564a307 from 7p... 40 8.7
61gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 8.7
62emb|BX005155.4| Zebrafish DNA sequence from clone CH211-286N5 in... 40 8.7
63emb|AL935193.9| Zebrafish DNA sequence from clone CH211-209H11, ... 40 8.7
64gb|AC139382.3| Mus musculus BAC clone RP23-30B24 from 12, comple... 40 8.7
65gb|AC112265.5| Mus musculus BAC clone RP23-421N20 from 10, compl... 40 8.7
66emb|AL953881.5| Zebrafish DNA sequence from clone CH211-208N2, c... 40 8.7
67gb|DQ272236.1| Homo sapiens G protein-coupled receptor 154 (GPR1... 40 8.7 
>gb|BC059295.1| Xenopus laevis hypothetical protein MGC68878, mRNA (cDNA clone
            MGC:68878 IMAGE:4683555), complete cds
          Length = 4080

 Score = 1066 bits (538), Expect = 0.0
 Identities = 580/600 (96%)
 Strand = Plus / Minus

                                                                        
Query: 40   aaaataggtcangttgtgagtgcaatgtgcttattnnnnnnnnngtgtcatgtacaaaag 99
            ||||||||||| |||||||||||||||||||||||          |||||||||||||||
Sbjct: 4012 aaaataggtcaagttgtgagtgcaatgtgcttattcccccccccatgtcatgtacaaaag 3953

                                                                        
Query: 100  gaagtggcagtgaatcggtngccagctcagtcagtcgctcacacgtcacagctctttgaa 159
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3952 gaagtggcagtgaatcggtagccagctcagtcagtcgctcacacgtcacagctctttgaa 3893

                                                                        
Query: 160  taaagaaaggcttcaaagcagggtgaatcagaaaagggacatcacacccctggccccaaa 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 taaagaaaggcttcaaagcagggtgaatcagaaaagggacatcacacccctggccccaaa 3833

                                                                        
Query: 220  aaatcacaaatgacacattcatagtaaaagtaaaatataaacccccacccccaaatgata 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3832 aaatcacaaatgacacattcatagtaaaagtaaaatataaacccccacccccaaatgata 3773

                                                                        
Query: 280  aaaaggngacaaacattgaaagaatgtgcattagtgaattacagtaaagcagcaaatcat 339
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3772 aaaaggagacaaacattgaaagaatgtgcattagtgaattacagtaaagcagcaaatcat 3713

                                                                        
Query: 340  tggctgaaagggttagttcatagcatataacatttctcttntgaatatgaataactcaag 399
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3712 tggctgaaagggttagttcatagcatataacatttctcttctgaatatgaataactcaag 3653

                                                                        
Query: 400  taatgaggcgggagctnccacaaggatgaaggcactgtatattggacataactgggggac 459
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3652 taatgaggcgggagctgccacaaggatgaaggcactgtatattggacataactgggggac 3593

                                                                        
Query: 460  tcanacctgctgancggacanaagccccaggactcccctgnagccccacacccattcaac 519
            ||| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 3592 tcagacctgctgagcggacagaagccccaggactcccctgcagccccacacccattcaac 3533

                                                                        
Query: 520  attctgatacaaatacattcatcaaaaatacagtttctaattatttatttcggtgcagaa 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3532 attctgatacaaatacattcatcaaaaatacagtttctaattatttatttcggtgcagaa 3473

                                                                        
Query: 580  acacttgcatgcagcataaaatatagcgcagactacaactgcaggcaacagtggccagct 639
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3472 acacttgcacgcagcataaaatatagcgcagactacaactgcaggcaacagtggccagct 3413
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>gb|BC044100.1| Xenopus laevis LBP protein; likely ortholog of mouse CRTR-1, mRNA
            (cDNA clone MGC:52787 IMAGE:4724632), complete cds
          Length = 3812

 Score =  168 bits (85), Expect = 1e-38
 Identities = 218/261 (83%), Gaps = 5/261 (1%)
 Strand = Plus / Minus

                                                                        
Query: 326  aagcagcaaatcattggctgaaagggttagttcatagcatata-acatttctcttntgaa 384
            |||||| ||||||||||||| ||| |||||| ||||||||    |||||  |||| ||||
Sbjct: 3444 aagcagtaaatcattggctgtaagtgttagtacatagcatccccacattcttcttctgaa 3385

                                                                        
Query: 385  tatgaataactcaagtaatgaggcgggagctnccacaaggatgaaggcactgtatattgg 444
            ||||||| ||||||| |||| |||||||| | |||||  ||| |||||||  |||||| |
Sbjct: 3384 tatgaattactcaagcaatggggcgggagatgccacattgataaaggcaca-tatattag 3326

                                                                        
Query: 445  acataactgggggactcanacctgctgancggacanaagccccaggactcccctgnagcc 504
            |||| ||||||||||||| |||||||||   || | ||||||||  ||||||||| ||||
Sbjct: 3325 acattactgggggactcagacctgctgagttgataaaagccccaacactcccctgcagcc 3266

                                                                        
Query: 505  ccacacccattcaacattctgatacaaatacattcatcaaaa---atacagtttctaatt 561
              ||||| | |||| |||||||||||||||||||||||||||   | |||||||||||||
Sbjct: 3265 gaacaccaactcaatattctgatacaaatacattcatcaaaacatacacagtttctaatt 3206

                                 
Query: 562  atttatttcggtgcagaaaca 582
            |||| ||| ||||||||||||
Sbjct: 3205 attttttttggtgcagaaaca 3185



 Score =  139 bits (70), Expect = 1e-29
 Identities = 187/222 (84%), Gaps = 11/222 (4%)
 Strand = Plus / Minus

                                                                        
Query: 91   gtacaaaaggaagtggcagtgaatcggtngccagctcagtcagtcgctcacacgtcacag 150
            ||||||||| ||||||||||||||| ||  || |||||||||||||||||||| ||||||
Sbjct: 3681 gtacaaaag-aagtggcagtgaatctgtaaccggctcagtcagtcgctcacacatcacag 3623

                                                                        
Query: 151  ----ctctttgaataaagaaaggcttcaaagcagggtgaatcagaaaagggacatcacac 206
                |||||||||||||||||||||||  |||||| ||||||||| |||| |||||   |
Sbjct: 3622 ctaactctttgaataaagaaaggcttc--agcaggttgaatcagataaggaacatcgtgc 3565

                                                                        
Query: 207  ccctggccccaaaaaatcacaaatgacacattcatagtaa---aagtaaaatataaaccc 263
             ||||||||| ||||||||||||| |||||||||||  ||   || |||| |||   |||
Sbjct: 3564 gcctggcccc-aaaaatcacaaattacacattcataacaaaacaactaaattattccccc 3506

                                                      
Query: 264  ccacccccaaatgataaaaaggngacaaacattgaaagaatg 305
            ||||||||||| |||||||| | ||||||||||||| |||||
Sbjct: 3505 ccacccccaaaagataaaaatgagacaaacattgaaggaatg 3464



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 47   gtcangttgtgagtgcaatgtgcttatt 74
            |||| |||||||||||||||||||||||
Sbjct: 3722 gtcatgttgtgagtgcaatgtgcttatt 3695
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>emb|AL954386.11| Zebrafish DNA sequence from clone CH211-242P18 in linkage group 1,
             complete sequence
          Length = 160259

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 542   caaaaatacagtttctaattattt 565
             ||||||||||||||||||||||||
Sbjct: 59301 caaaaatacagtttctaattattt 59278
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>gb|AC073215.5| Homo sapiens BAC clone RP11-501L9 from 2, complete sequence
          Length = 105392

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   aaaaaatcacaaatgacacat 237
             |||||||||||||||||||||
Sbjct: 14990 aaaaaatcacaaatgacacat 14970
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>gb|AC061958.11|AC061958 Homo sapiens chromosome 3 clone RP11-6B7, complete sequence
          Length = 177717

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 538    tcatcaaaaatacagtttcta 558
              |||||||||||||||||||||
Sbjct: 133625 tcatcaaaaatacagtttcta 133645
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>emb|AJ341463.1|HSA341463 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-TF12RS
          Length = 637

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 161 aaagaaaggcttcaaagcagg 181
           |||||||||||||||||||||
Sbjct: 488 aaagaaaggcttcaaagcagg 508
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>emb|AL928680.5| Mouse DNA sequence from clone RP23-396N6 on chromosome 2, complete
             sequence
          Length = 217726

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 544   aaaatacagtttctaattatt 564
             |||||||||||||||||||||
Sbjct: 80621 aaaatacagtttctaattatt 80641
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>gb|AC122364.4| Mus musculus chromosome 8 clone RP23-442K12, complete sequence
          Length = 193183

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   aaaaaatcacaaatgacaca 236
             ||||||||||||||||||||
Sbjct: 26219 aaaaaatcacaaatgacaca 26200
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>ref|XM_464442.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1404

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 agcaaatcattggctgaaag 349
           ||||||||||||||||||||
Sbjct: 926 agcaaatcattggctgaaag 907
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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    gtaaaagtaaaatataaacc 262
              ||||||||||||||||||||
Sbjct: 772918 gtaaaagtaaaatataaacc 772937
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>gb|AY811067.1| Schistosoma japonicum SJCHGC03005 protein mRNA, partial cds
          Length = 747

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 217 aaaaaatcacaaatgacacattca 240
           |||||||||||||||| |||||||
Sbjct: 171 aaaaaatcacaaatgaaacattca 194
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>gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome 6, complete sequence
          Length = 173936

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   aaaatataaacccccacccccaaa 274
             ||||||| ||||||||||||||||
Sbjct: 42480 aaaatatcaacccccacccccaaa 42457
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>gb|AC090330.22| Homo sapiens chromosome 18, clone RP11-813B21, complete sequence
          Length = 160530

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 505   ccacacccattcaacattctgata 528
             |||||||||||| |||||||||||
Sbjct: 24299 ccacacccattccacattctgata 24276
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>gb|AC131039.7| Mus musculus chromosome 1, clone RP23-274I23, complete sequence
          Length = 187304

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   acagtaaagcagcaaatcat 339
             ||||||||||||||||||||
Sbjct: 40656 acagtaaagcagcaaatcat 40637
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>gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosome 8, complete sequence
          Length = 207577

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    aaaaaatcacaaatgacaca 236
              ||||||||||||||||||||
Sbjct: 194861 aaaaaatcacaaatgacaca 194842
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>emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chromosome 12, complete
             sequence
          Length = 219782

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   atatgaataactcaagtaat 403
             ||||||||||||||||||||
Sbjct: 55509 atatgaataactcaagtaat 55490
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>gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome 6, complete sequence
          Length = 179078

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 251   aaaatataaacccccacccccaaa 274
             ||||||| ||||||||||||||||
Sbjct: 17180 aaaatatcaacccccacccccaaa 17203
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>gb|AC132419.3| Mus musculus BAC clone RP23-252B17 from chromosome 18, complete
             sequence
          Length = 190421

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 619   tgcaggcaacagtggccagc 638
             ||||||||||||||||||||
Sbjct: 44343 tgcaggcaacagtggccagc 44324
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>gb|AC129177.3| Mus musculus BAC clone RP23-175A22 from 3, complete sequence
          Length = 229072

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    tataaacccccacccccaaa 274
              ||||||||||||||||||||
Sbjct: 185330 tataaacccccacccccaaa 185349
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>gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, complete sequence
          Length = 234973

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    tgaatatgaataactcaagt 400
              ||||||||||||||||||||
Sbjct: 159364 tgaatatgaataactcaagt 159345
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>emb|CR381538.9| Zebrafish DNA sequence from clone CH211-87B12 in linkage group 1,
             complete sequence
          Length = 169036

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 542   caaaaatacagtttctaattattt 565
             |||||| |||||||||||||||||
Sbjct: 57669 caaaaacacagtttctaattattt 57646
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>gb|AC110508.8| Mus musculus chromosome 3, clone RP23-382L1, complete sequence
          Length = 224790

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    tataaacccccacccccaaa 274
              ||||||||||||||||||||
Sbjct: 204442 tataaacccccacccccaaa 204423
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>gb|AC116578.3| Mus musculus BAC clone RP23-264P8 from 9, complete sequence
          Length = 151722

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tagtaaaagtaaaatataaa 260
             ||||||||||||||||||||
Sbjct: 53512 tagtaaaagtaaaatataaa 53493



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tagtaaaagtaaaatataaa 260
             ||||||||||||||||||||
Sbjct: 53162 tagtaaaagtaaaatataaa 53143
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>gb|AC115751.6| Mus musculus chromosome 1, clone RP23-16I21, complete sequence
          Length = 256998

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   acagtaaagcagcaaatcat 339
             ||||||||||||||||||||
Sbjct: 47596 acagtaaagcagcaaatcat 47615
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>gb|AC122163.20| Medicago truncatula clone mth2-16l2, complete sequence
          Length = 117439

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    aaatcattggctgaaagggt 352
              ||||||||||||||||||||
Sbjct: 110800 aaatcattggctgaaagggt 110781
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>emb|AL591042.5| Human DNA sequence from clone RP11-480L11 on chromosome 1 Contains
            part of the VAV3 gene for VAV3 oncogene, complete
            sequence
          Length = 148028

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  gctctttgaataaagaaagg 169
            ||||||||||||||||||||
Sbjct: 5587 gctctttgaataaagaaagg 5568
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>emb|AL590547.3| Human DNA sequence from clone RP11-367A10 on chromosome 1 Contains part
             of the gene for a novel protein (MGC27277), complete
             sequence
          Length = 61119

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   aaatacagtttctaattatt 564
             ||||||||||||||||||||
Sbjct: 26699 aaatacagtttctaattatt 26718
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 503     ccccacacccattcaacatt 522
               ||||||||||||||||||||
Sbjct: 1683894 ccccacacccattcaacatt 1683875
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>emb|AL354722.10| Human DNA sequence from clone RP11-744O14 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 126045

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 425   atgaaggcactgtatattggacat 448
             ||||||||||||||||||| ||||
Sbjct: 25809 atgaaggcactgtatattgcacat 25786
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>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 543    aaaaatacagtttctaattattta 566
              ||||||| ||||||||||||||||
Sbjct: 165416 aaaaatatagtttctaattattta 165439
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>emb|AL627383.5| Zebrafish DNA sequence from clone RP71-1O18 in linkage group 14
             Contains a novel gene similar to GRIA3 (ionotrophic
             glutamate receptor AMPA 3), a novel gene similar to THOC2
             (THO complex 2) and two CpG islands, complete sequence
          Length = 166395

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttcaaagcagggtgaatcag 190
             ||||||||||||||||||||
Sbjct: 89045 ttcaaagcagggtgaatcag 89064
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>emb|BX465223.9| Zebrafish DNA sequence from clone RP71-8E8 in linkage group 11,
             complete sequence
          Length = 183229

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttcaaagcagggtgaatcag 190
             ||||||||||||||||||||
Sbjct: 80108 ttcaaagcagggtgaatcag 80127
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>emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 in linkage group 17,
              complete sequence
          Length = 165743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ttcaaagcagggtgaatcag 190
              ||||||||||||||||||||
Sbjct: 144715 ttcaaagcagggtgaatcag 144734
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>gb|AC090125.7| Homo sapiens chromosome 18, clone RP11-625N15, complete sequence
          Length = 163228

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 543    aaaaatacagtttctaattatttatttc 570
              ||||| ||||||||||||||||| ||||
Sbjct: 107754 aaaaagacagtttctaattatttttttc 107781
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>gb|AC090465.15| Homo sapiens chromosome 18, clone RP11-527C6, complete sequence
          Length = 174535

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 505    ccacacccattcaacattctgata 528
              |||||||||||| |||||||||||
Sbjct: 143068 ccacacccattccacattctgata 143045
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>emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in linkage group 18,
             complete sequence
          Length = 121656

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   taaagaaaggcttcaaagca 179
             ||||||||||||||||||||
Sbjct: 48761 taaagaaaggcttcaaagca 48742
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>emb|BX322654.15| Zebrafish DNA sequence from clone DKEY-46G23 in linkage group 5,
             complete sequence
          Length = 118113

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttcaaagcagggtgaatcag 190
             ||||||||||||||||||||
Sbjct: 88109 ttcaaagcagggtgaatcag 88128
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>gb|AC103921.2| Homo sapiens chromosome 3 clone RP11-131O21, complete sequence
          Length = 156264

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    aaaaaatcacaaatgacaca 236
              ||||||||||||||||||||
Sbjct: 142047 aaaaaatcacaaatgacaca 142028
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>gb|AC096919.3| Homo sapiens chromosome 3 clone RP11-611H10, complete sequence
          Length = 173700

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   aaaaaatcacaaatgacaca 236
             ||||||||||||||||||||
Sbjct: 26752 aaaaaatcacaaatgacaca 26733
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>gb|AC090466.5| Homo sapiens chromosome 8, clone RP11-619O19, complete sequence
          Length = 191049

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     ttgcttttaatacaaaatag 46
              ||||||||||||||||||||
Sbjct: 166462 ttgcttttaatacaaaatag 166443
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>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence
          Length = 131913

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   aaaatcacaaatgacacatt 238
             ||||||||||||||||||||
Sbjct: 52248 aaaatcacaaatgacacatt 52267
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>emb|BX322796.12| Zebrafish DNA sequence from clone DKEY-210F16 in linkage group 17,
             complete sequence
          Length = 68234

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttcaaagcagggtgaatcag 190
             ||||||||||||||||||||
Sbjct: 24525 ttcaaagcagggtgaatcag 24544
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>gb|AC158389.2| Mus musculus BAC clone RP24-476G13 from chromosome 12, complete sequence
          Length = 185533

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    cacccctggccccaaaaaat 223
              ||||||||||||||||||||
Sbjct: 170084 cacccctggccccaaaaaat 170065
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>gb|AC151769.3| Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence
          Length = 186410

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tagtaaaagtaaaatataaa 260
              ||||||||||||||||||||
Sbjct: 161726 tagtaaaagtaaaatataaa 161707



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tagtaaaagtaaaatataaa 260
              ||||||||||||||||||||
Sbjct: 161376 tagtaaaagtaaaatataaa 161357
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>ref|NM_171688.2| Caenorhabditis elegans T23F2.2a (T23F2.2) mRNA, complete cds
          Length = 4665

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  cttcaaagcagggtgaatca 189
            ||||||||||||||||||||
Sbjct: 2494 cttcaaagcagggtgaatca 2513
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>ref|NM_171953.2| Caenorhabditis elegans T23F2.2b (T23F2.2) mRNA, complete cds
          Length = 4677

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  cttcaaagcagggtgaatca 189
            ||||||||||||||||||||
Sbjct: 2494 cttcaaagcagggtgaatca 2513
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     agcaaatcattggctgaaag 349
               ||||||||||||||||||||
Sbjct: 5241534 agcaaatcattggctgaaag 5241515
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>emb|BX323024.11| Zebrafish DNA sequence from clone DKEYP-2B10 in linkage group 7, complete
              sequence
          Length = 178824

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 551    agtttctaattatttatttc 570
              ||||||||||||||||||||
Sbjct: 167643 agtttctaattatttatttc 167624
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>emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in linkage group 1, complete
              sequence
          Length = 252757

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ttcaaagcagggtgaatcag 190
              ||||||||||||||||||||
Sbjct: 237790 ttcaaagcagggtgaatcag 237809
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>gb|AC155296.2| Mus musculus BAC clone RP24-303N23 from chromosome 12, complete
             sequence
          Length = 167744

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   cacccctggccccaaaaaat 223
             ||||||||||||||||||||
Sbjct: 34961 cacccctggccccaaaaaat 34942
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>gb|AC157519.2| Mus musculus BAC clone RP23-202O17 from chromosome 19, complete
             sequence
          Length = 215073

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   aaaagtaaaatataaacccc 264
             ||||||||||||||||||||
Sbjct: 42967 aaaagtaaaatataaacccc 42948
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>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    aagaatgtgcattagtgaat 318
              ||||||||||||||||||||
Sbjct: 152646 aagaatgtgcattagtgaat 152627
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>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown,
             complete sequence
          Length = 159393

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   aagaatgtgcattagtgaat 318
             ||||||||||||||||||||
Sbjct: 97620 aagaatgtgcattagtgaat 97601
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>gb|AC024901.29| Homo sapiens 12 BAC RP11-684M17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 129638

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 543    aaaaatacagtttctaattattta 566
              ||||||| ||||||||||||||||
Sbjct: 128601 aaaaatatagtttctaattattta 128578
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>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17,
              complete sequence
          Length = 193078

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    atgtgcattagtgaattaca 322
              ||||||||||||||||||||
Sbjct: 143251 atgtgcattagtgaattaca 143270
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>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0437H03
          Length = 170173

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    agcaaatcattggctgaaag 349
              ||||||||||||||||||||
Sbjct: 134987 agcaaatcattggctgaaag 134968
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>dbj|AK064096.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F11, full
           insert sequence
          Length = 1404

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 agcaaatcattggctgaaag 349
           ||||||||||||||||||||
Sbjct: 926 agcaaatcattggctgaaag 907
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>emb|CT033839.10| Zebrafish DNA sequence from clone CH73-91I15 in linkage group 2,
            complete sequence
          Length = 50530

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 144  gtcacagctctttgaataaagaaa 167
            ||||||||||||||| ||||||||
Sbjct: 1826 gtcacagctctttgagtaaagaaa 1849
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>emb|CR388177.16| Zebrafish DNA sequence from clone CH211-263C8 in linkage group 2,
             complete sequence
          Length = 79793

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   gtcacagctctttgaataaagaaa 167
             ||||||||||||||| ||||||||
Sbjct: 79619 gtcacagctctttgagtaaagaaa 79642
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>gb|AC005853.1|AC005853 Homo sapiens clone UWGC:g1564a307 from 7p14-15, complete sequence
          Length = 39763

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   acaaatacattcatcaaaaa 547
             ||||||||||||||||||||
Sbjct: 25154 acaaatacattcatcaaaaa 25135
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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      gttgcttttaatacaaaata 45
               ||||||||||||||||||||
Sbjct: 1162660 gttgcttttaatacaaaata 1162641
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>emb|BX005155.4| Zebrafish DNA sequence from clone CH211-286N5 in linkage group 7,
             complete sequence
          Length = 139365

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttcaaagcagggtgaatcag 190
             ||||||||||||||||||||
Sbjct: 79616 ttcaaagcagggtgaatcag 79635
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>emb|AL935193.9| Zebrafish DNA sequence from clone CH211-209H11, complete sequence
          Length = 208059

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 551    agtttctaattatttatttc 570
              ||||||||||||||||||||
Sbjct: 156728 agtttctaattatttatttc 156747
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>gb|AC139382.3| Mus musculus BAC clone RP23-30B24 from 12, complete sequence
          Length = 180698

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 251    aaaatataaacccccacccccaaatgat 278
              |||| |||| ||||||||||||||||||
Sbjct: 128159 aaaaaataatcccccacccccaaatgat 128186
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>gb|AC112265.5| Mus musculus BAC clone RP23-421N20 from 10, complete sequence
          Length = 203204

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    atgacacattcatagtaaaa 248
              ||||||||||||||||||||
Sbjct: 105776 atgacacattcatagtaaaa 105795
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>emb|AL953881.5| Zebrafish DNA sequence from clone CH211-208N2, complete sequence
          Length = 201659

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 542   caaaaatacagtttctaattattt 565
             |||||| |||||||||||||||||
Sbjct: 57105 caaaaacacagtttctaattattt 57082
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>gb|DQ272236.1| Homo sapiens G protein-coupled receptor 154 (GPR154) gene, complete cds
          Length = 195685

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 528    acaaatacattcatcaaaaa 547
              ||||||||||||||||||||
Sbjct: 188192 acaaatacattcatcaaaaa 188173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,161,433
Number of Sequences: 3902068
Number of extensions: 7161433
Number of successful extensions: 149603
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149348
Number of HSP's gapped (non-prelim): 250
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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