ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1g23 |
|---|---|
| Clone Library Name | barley_pub |
>MCH1_YARLI (Q6CGU8) Probable transporter MCH1| Length = 486 Score = 43.1 bits (100), Expect = 7e-04 Identities = 35/133 (26%), Positives = 55/133 (41%) Frame = -3 Query: 606 LAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGPNSIGVNHN 427 L AA + + V + + T + G S G F ++ ++++G ++G Sbjct: 352 LVAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWG 411 Query: 426 ILITNIPLGSLLYGQIAALVYDANGLKSTVLDKLTGTVDTMIVCMGAKCYSNTFFVWGCI 247 I + +GSL YG + A VYDA G VC G CY TF + G Sbjct: 412 SFILALAVGSLGYGLLFAKVYDA--------ASEVGVGSMSQVCSGVHCYGLTFVITG-- 461 Query: 246 TLLGLASSIALFL 208 T L A++ F+ Sbjct: 462 TGLAFAAAAVFFI 474
>MCH1_NEUCR (Q9P3K8) Probable transporter MCH1| Length = 598 Score = 39.7 bits (91), Expect = 0.008 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 3/144 (2%) Frame = -3 Query: 633 RVSFARTGWLAAALVPMPVAFFLM---WKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSE 463 R S +R +L V + V + W + + L+G G +F+ + + Sbjct: 445 RFSLSRVSFLLFFAVTLSVGLATLASGWIQNHGERFWVASGLVGAGYGAVFSLTPIIITV 504 Query: 462 LFGPNSIGVNHNILITNIPLGSLLYGQIAALVYDANGLKSTVLDKLTGTVDTMIVCMGAK 283 ++G + N I+ LG+ +G + + VY + G++ + G D C G++ Sbjct: 505 IWGVENFATNWGIVAMFPALGATFWGLVYSAVYQS-GVEKAASNGQGGEEDQF--CYGSE 561 Query: 282 CYSNTFFVWGCITLLGLASSIALF 211 CY++ F W + +A + L+ Sbjct: 562 CYASAF--WAMAASVWVACGLVLW 583
>Y38K_THETE (P05715) Hypothetical 38 kDa protein in 23S RNA operon| Length = 373 Score = 37.7 bits (86), Expect = 0.031 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = -3 Query: 534 IAGTALIGLSSGFIFAAAVSVTSELFGPNSIGVNHNILITNIPLGSLLYGQIAALVYDAN 355 I G +GL+ G I ++++S +FGP N+ +L T +G L VY Sbjct: 278 IVGVIAVGLTGGAIIILYLNLSSRIFGPKYATANNGLLYTAKAVGGTLGSAAFGYVYALG 337 Query: 354 GLKSTVLDKLTGTVDTMIV 298 G ++++L + M + Sbjct: 338 GARASLLFAAASALAAMAI 356
>MCH1_EMENI (Q5AXV1) Probable transporter mch1| Length = 615 Score = 37.0 bits (84), Expect = 0.052 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%) Frame = -3 Query: 651 PD-FLHGRVSFARTGWLAAALVPMPVAFFLMWK---LHDVNTLIAGTALIGLSSGFIFAA 484 PD F R + +R +L + + + + F L+ H TAL+GL G IF+ Sbjct: 464 PDPFTKQRPALSRLAFLIPSALLLSLGFLLLASPLPTHHPELSHLTTALVGLGYGSIFSL 523 Query: 483 AVSVTSELFGPNSIGVNHNILITNIPLGSLLYGQIAALVYDANGLKSTVLDKLTGTVDTM 304 + S ++G + G N I+ G+ ++G I + Y + S D Sbjct: 524 VPIIISVVWGVENFGTNWGIVAMFPAAGAAMWGVIYSRAYQSAADGSPTDDG-------- 575 Query: 303 IVCMGAKCY-----SNTFFVWGCI 247 C G KC+ TF VW I Sbjct: 576 -QCHGWKCFGFWSIGCTFSVWVAI 598
>MCH1_HANAN (Q96TW9) Probable transporter MCH1| Length = 489 Score = 34.3 bits (77), Expect = 0.34 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Frame = -3 Query: 657 ALPDFLHGRVSFARTGWLAAALVPMP--VAFFLMWKLHDVNTLIAGTALIGLSSGFIFAA 484 AL DFL +R+ WL +++ + F+ + +AL G S G +F Sbjct: 318 ALSDFLVTNYQISRS-WLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGGLFTL 376 Query: 483 AVSVTSELFGPNSIGVNHNILITNIPLGSLLYGQIAALVYDA 358 +V ++GP G + +GS +G + LVYD+ Sbjct: 377 YPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGMVFGLVYDS 418
>MCH1_ASHGO (Q752I1) Probable transporter MCH1| Length = 450 Score = 33.9 bits (76), Expect = 0.44 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Frame = -3 Query: 642 LHGRVSFARTGWLAAAL-VPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTS 466 +H VS W L V L + D L +AL G G +F + +T Sbjct: 313 IHNGVSTMSVQWAVLLLGVVGQWIVVLATRASDGPLLSLASALSGACYGGLFTVSPILTL 372 Query: 465 ELFGPNSIGVNHNILITNIPLGSLLYGQIAALVYDANGLKSTVL 334 ++G G + + +GS+L+G A ++DAN S VL Sbjct: 373 AVWGDAVFGTAYGSFMITPAVGSILFGLTYAHIFDANCTPSGVL 416
>MCH1_ASPFU (Q4WVT3) Probable transporter mch1| Length = 619 Score = 33.9 bits (76), Expect = 0.44 Identities = 27/92 (29%), Positives = 40/92 (43%) Frame = -3 Query: 525 TALIGLSSGFIFAAAVSVTSELFGPNSIGVNHNILITNIPLGSLLYGQIAALVYDANGLK 346 TALIGL G F+ + S ++G + G N I+ G+ ++G I + Y Sbjct: 513 TALIGLGYGSAFSLVPIIISVVWGVENFGTNWGIVAMVPAAGAAMWGVIYSRGY------ 566 Query: 345 STVLDKLTGTVDTMIVCMGAKCYSNTFFVWGC 250 D G+ D C G +CY F+ GC Sbjct: 567 QDATDGGNGSPDGQ--CHGWRCYG--FWAVGC 594
>YHJX_ECOLI (P37662) Inner membrane protein yhjX| Length = 402 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -3 Query: 540 TLIAGTALIGLSSGFIFAAAVSVTSELFGPNSIGVNHNILITNIPLGSLLYGQIAAL 370 T A A + + G S+ SE FG N++ N+ ++ +GS+ IA+L Sbjct: 306 TFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASL 362
>NAC1_BOVIN (P48765) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 970 Score = 30.8 bits (68), Expect = 3.7 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 803 VSILMIGLLTAFIGDLASHFACTIALKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 861 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 862 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 894
>VTXB_SYNVE (Q98993) Verrucotoxin subunit beta (VTX beta-subunit)| Length = 695 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = -3 Query: 429 NILITNIPLGSLLYGQIAALVYDANGLKSTVLDKLTGTVDTMI 301 NI T++ +G +LYG A V+D+N + ST + ++ G ++ +I Sbjct: 134 NIQATHVVIG-ILYGANAFFVFDSNKVDSTNVQEIQGQMEAVI 175
>STXB_SYNHO (Q91453) Stonustoxin subunit beta (SNTX beta-subunit)| Length = 699 Score = 30.4 bits (67), Expect = 4.9 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = -3 Query: 429 NILITNIPLGSLLYGQIAALVYDANGLKSTVLDKLTGTVDTMI 301 NI T++ +G +LYG A V+D+N + ST + ++ G ++ +I Sbjct: 134 NIQATHVVIG-ILYGANAFFVFDSNKVDSTNVQEIQGQMEAVI 175
>NAC1_MOUSE (P70414) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 970 Score = 30.0 bits (66), Expect = 6.4 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 803 VSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 861 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 862 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 894
>NAC1_HUMAN (P32418) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 973 Score = 30.0 bits (66), Expect = 6.4 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 806 VSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 864 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 865 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 897
>NAC1_CAVPO (P48766) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 970 Score = 30.0 bits (66), Expect = 6.4 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 803 VSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 861 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 862 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 894
>NAC1_RAT (Q01728) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 971 Score = 30.0 bits (66), Expect = 6.4 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 804 VSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 862 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 863 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 895
>ATG4B_BOVIN (Q6PZ03) Cysteine protease ATG4B (EC 3.4.22.-) (Autophagy-related| protein 4 homolog B) (Autophagy-related cysteine endopeptidase 2B) (Autophagin-2B) (bAut2B) Length = 393 Score = 29.6 bits (65), Expect = 8.3 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +3 Query: 330 CPVPYSSIHLHHIPGRQSV 386 CPVP S H H PGR S+ Sbjct: 292 CPVPDESFHCQHPPGRMSI 310
>NAC1_FELCA (P48767) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 970 Score = 29.6 bits (65), Expect = 8.3 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 803 VSILMIGILTAFIGDLASHFGCTIGLKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 861 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 862 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 894
>NAC1_CANFA (P23685) Sodium/calcium exchanger 1 precursor (Na(+)/Ca(2+)-exchange| protein 1) Length = 970 Score = 29.6 bits (65), Expect = 8.3 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -3 Query: 630 VSFARTGWLAAALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGP 451 VS G L A + + F L D T + AL G S FA+ V+ T + + Sbjct: 803 VSILMIGILTAFIGDLASHFGCTIGLKDSVTAVVFVAL-GTSVPDTFASKVAATQDQYAD 861 Query: 450 NSIGVNHNILITNIPLGSLLYGQIAALVYDANG 352 SIG N+ LG + IAA+ + ANG Sbjct: 862 ASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANG 894
>GLMS_NEIG1 (Q5F584) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 611 Score = 29.6 bits (65), Expect = 8.3 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -3 Query: 600 AALVPMPVAFFLMWKLHDVNTLIAGTALIGLSSGFIFAAAVSVTSELFGPNSIGVNHNIL 421 A+L P P + F+ ++H+ IA TA + L GFI E FG N+ V +I Sbjct: 244 ASLEPGPHSHFMQKEIHEQPRAIADTAEVFLDGGFI--------PENFGKNAKSVFESIR 295 Query: 420 ITNI-PLGSLLYGQIAA 373 I G+ Y + A Sbjct: 296 SVKILACGTSYYAALTA 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,900,755 Number of Sequences: 219361 Number of extensions: 1908824 Number of successful extensions: 5196 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5040 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5194 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
