Clone Name | rbasd1g23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 391 bits (197), Expect = e-105 Identities = 371/429 (86%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaatgtgatgcaacccca 258 ||||||||||||||||||| ||||||||| |||| || || |||||||| |||||||| Sbjct: 348070 tcttgttctcaagaataggattatgcttgacaccaaccctaggaatgtgatacaacccca 348011 Query: 259 cacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccgt 318 ||| ||||||||| ||||||||||||| | |||||||| || | ||| ||||||| | | Sbjct: 348010 cacgaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaatcat 347951 Query: 319 gccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcggc 378 |||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| || Sbjct: 347950 gccattgtggttgtctattactgacatctttaggccatttgcatcatacactagggcagc 347891 Query: 379 aatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttcac 438 |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 347890 aatctgaccatagagaagtgatccaagagggatgttggtgatgaggatgttatggttcat 347831 Query: 439 accgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatgaa 498 || ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct: 347830 gccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatgaa 347771 Query: 499 acctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaattt 558 ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| Sbjct: 347770 gcctgagcttaggccaattagcgctgttcctgctaccagagtgtttacatcatgcaattt 347711 Query: 559 ccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtccg 618 |||||||| |||||| || | ||||||||| |||||||| || ||||||||||||||||| Sbjct: 347710 ccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtccg 347651 Query: 619 agcaaatga 627 ||||||||| Sbjct: 347650 agcaaatga 347642
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 391 bits (197), Expect = e-105 Identities = 371/429 (86%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaatgtgatgcaacccca 258 ||||||||||||||||||| ||||||||| |||| || || |||||||| |||||||| Sbjct: 348070 tcttgttctcaagaataggattatgcttgacaccaaccctaggaatgtgatacaacccca 348011 Query: 259 cacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccgt 318 ||| ||||||||| ||||||||||||| | |||||||| || | ||| ||||||| | | Sbjct: 348010 cacgaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaatcat 347951 Query: 319 gccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcggc 378 |||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| || Sbjct: 347950 gccattgtggttgtctattactgacatctttaggccatttgcatcatacactagggcagc 347891 Query: 379 aatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttcac 438 |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 347890 aatctgaccatagagaagtgatccaagagggatgttggtgatgaggatgttatggttcat 347831 Query: 439 accgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatgaa 498 || ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct: 347830 gccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatgaa 347771 Query: 499 acctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaattt 558 ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| Sbjct: 347770 gcctgagcttaggccaattagcgctgttcctgctaccagagtgtttacatcatgcaattt 347711 Query: 559 ccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtccg 618 |||||||| |||||| || | ||||||||| |||||||| || ||||||||||||||||| Sbjct: 347710 ccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtccg 347651 Query: 619 agcaaatga 627 ||||||||| Sbjct: 347650 agcaaatga 347642
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 391 bits (197), Expect = e-105 Identities = 371/429 (86%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaatgtgatgcaacccca 258 ||||||||||||||||||| ||||||||| |||| || || |||||||| |||||||| Sbjct: 81121 tcttgttctcaagaataggattatgcttgacaccaaccctaggaatgtgatacaacccca 81062 Query: 259 cacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccgt 318 ||| ||||||||| ||||||||||||| | |||||||| || | ||| ||||||| | | Sbjct: 81061 cacgaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaatcat 81002 Query: 319 gccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcggc 378 |||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| || Sbjct: 81001 gccattgtggttgtctattactgacatctttaggccatttgcatcatacactagggcagc 80942 Query: 379 aatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttcac 438 |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 80941 aatctgaccatagagaagtgatccaagagggatgttggtgatgaggatgttatggttcat 80882 Query: 439 accgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatgaa 498 || ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct: 80881 gccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatgaa 80822 Query: 499 acctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaattt 558 ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||| Sbjct: 80821 gcctgagcttaggccaattagcgctgttcctgctaccagagtgtttacatcatgcaattt 80762 Query: 559 ccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtccg 618 |||||||| |||||| || | ||||||||| |||||||| || ||||||||||||||||| Sbjct: 80761 ccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtccg 80702 Query: 619 agcaaatga 627 ||||||||| Sbjct: 80701 agcaaatga 80693
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 385 bits (194), Expect = e-103 Identities = 368/426 (86%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaatgtgatgcaacccca 258 ||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||||| Sbjct: 344500 tcttgttctcaagaataggattatgcttgacaccaaccccaggaatgtgatacaacccca 344441 Query: 259 cacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccgt 318 ||||||||||||| ||||||||||||| | |||||||| || | ||| ||||||||| | Sbjct: 344440 cacaaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaaccat 344381 Query: 319 gccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcggc 378 |||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| || Sbjct: 344380 gccattgcggttgtctattactgacatctttaggccatttgcatcatacactagggcagc 344321 Query: 379 aatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttcac 438 |||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 344320 aatctgaccgtagagaagtgatccaagagggatgttggtgatgaggatgttatggttcat 344261 Query: 439 accgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatgaa 498 || ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct: 344260 gccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatgaa 344201 Query: 499 acctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaattt 558 ||||||||||| ||||||| || |||||||||| ||||||||||||||| |||||||| Sbjct: 344200 gcctgagcttagaccaattagtgctgttcctgctaccagagtgtttacatcatgcaattt 344141 Query: 559 ccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtccg 618 |||||||| |||||| || | ||||||||| |||||||| || ||||||||||||||||| Sbjct: 344140 ccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtccg 344081 Query: 619 agcaaa 624 |||||| Sbjct: 344080 agcaaa 344075
>dbj|AK065945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F17, full insert sequence Length = 2088 Score = 385 bits (194), Expect = e-103 Identities = 396/462 (85%), Gaps = 1/462 (0%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaa-tgtgatgcaacccc 257 ||||||||||||||||||| ||||||||| |||| ||||| || |||||| ||||||| Sbjct: 1766 tcttgttctcaagaataggattatgcttgacaccaaccccaggaaatgtgatacaacccc 1707 Query: 258 acacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccg 317 |||||||||||||| ||||||||||||| | |||||||| || | ||| ||||||||| Sbjct: 1706 acacaaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaacca 1647 Query: 318 tgccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcgg 377 ||||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| | Sbjct: 1646 tgccattgcggttgtctattactgacatctttaggccatttgcatcatacactagggcag 1587 Query: 378 caatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttca 437 ||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 1586 caatctgaccgtagagaagtgatccaagagggatgttggtgatgaggatgttatggttca 1527 Query: 438 caccgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatga 497 || ||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||| Sbjct: 1526 tgccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatga 1467 Query: 498 aacctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaatt 557 | ||||||||||| ||||||| || |||||||||| ||||||||||||||| ||||||| Sbjct: 1466 agcctgagcttagaccaattagtgctgttcctgctaccagagtgtttacatcatgcaatt 1407 Query: 558 tccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtcc 617 ||||||||| |||||| || | ||||||||| |||||||| || |||||||||||||||| Sbjct: 1406 tccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtcc 1347 Query: 618 gagcaaatgacaccctcccgtgaaggaagtcagggagtgcag 659 ||||||| || ||| ||| | |||||||||| || ||||||| Sbjct: 1346 gagcaaacgaaaccttcctgcgaaggaagtctggaagtgcag 1305
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 385 bits (194), Expect = e-103 Identities = 368/426 (86%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaatgtgatgcaacccca 258 ||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||||| Sbjct: 344500 tcttgttctcaagaataggattatgcttgacaccaaccccaggaatgtgatacaacccca 344441 Query: 259 cacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccgt 318 ||||||||||||| ||||||||||||| | |||||||| || | ||| ||||||||| | Sbjct: 344440 cacaaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaaccat 344381 Query: 319 gccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcggc 378 |||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| || Sbjct: 344380 gccattgcggttgtctattactgacatctttaggccatttgcatcatacactagggcagc 344321 Query: 379 aatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttcac 438 |||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 344320 aatctgaccgtagagaagtgatccaagagggatgttggtgatgaggatgttatggttcat 344261 Query: 439 accgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatgaa 498 || ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct: 344260 gccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatgaa 344201 Query: 499 acctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaattt 558 ||||||||||| ||||||| || |||||||||| ||||||||||||||| |||||||| Sbjct: 344200 gcctgagcttagaccaattagtgctgttcctgctaccagagtgtttacatcatgcaattt 344141 Query: 559 ccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtccg 618 |||||||| |||||| || | ||||||||| |||||||| || ||||||||||||||||| Sbjct: 344140 ccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtccg 344081 Query: 619 agcaaa 624 |||||| Sbjct: 344080 agcaaa 344075
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 385 bits (194), Expect = e-103 Identities = 368/426 (86%) Strand = Plus / Minus Query: 199 tcttgttctcaagaatagggctatgcttgatgccaagcccagcaatgtgatgcaacccca 258 ||||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||||| Sbjct: 51818 tcttgttctcaagaataggattatgcttgacaccaaccccaggaatgtgatacaacccca 51759 Query: 259 cacaaagaatgtgtttgagtagcacttcgcacccatgcacactatcatggtgtcaaccgt 318 ||||||||||||| ||||||||||||| | |||||||| || | ||| ||||||||| | Sbjct: 51758 cacaaagaatgtggttgagtagcactttggccccatgcaaaccaccatagtgtcaaccat 51699 Query: 319 gccagtgagtttgtccagtaccgtactcttcaatccatttgcatcatataccagggcggc 378 |||| || | ||||| | ||| | |||| | |||||||||||||| || ||||| || Sbjct: 51698 gccattgcggttgtctattactgacatctttaggccatttgcatcatacactagggcagc 51639 Query: 379 aatctgtccatagaggagtgagccaagagggatattggtgatgaggatgttatggttcac 438 |||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 51638 aatctgaccgtagagaagtgatccaagagggatgttggtgatgaggatgttatggttcat 51579 Query: 439 accgatgctatttggtccaaagagctcggatgtcactgacactgccgcagcgaagatgaa 498 || ||||| ||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct: 51578 gccaatgctgtttggtccaaagagctcagaggtcactgacactgctgcagcaaagatgaa 51519 Query: 499 acctgagcttaggccaattaacgccgttcctgctatcagagtgtttacatcgtgcaattt 558 ||||||||||| ||||||| || |||||||||| ||||||||||||||| |||||||| Sbjct: 51518 gcctgagcttagaccaattagtgctgttcctgctaccagagtgtttacatcatgcaattt 51459 Query: 559 ccacattaagaagaaagcaactggcatgggcaccaacgctgccgcaagccaccctgtccg 618 |||||||| |||||| || | ||||||||| |||||||| || ||||||||||||||||| Sbjct: 51458 ccacattaggaagaacgccattggcatgggaaccaacgcagctgcaagccaccctgtccg 51399 Query: 619 agcaaa 624 |||||| Sbjct: 51398 agcaaa 51393
>ref|NM_102886.1| Arabidopsis thaliana unknown protein AT1G31470 mRNA, complete cds Length = 1641 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgtcact 475 |||||||| ||||| ||||| ||||| | |||||| ||||||||||| || ||||| | Sbjct: 1367 gtgatgagaatgttgtggttaacacctacgctattgggtccaaagagatcagatgttatg 1308 Query: 476 gacactgccgcagcgaagatgaaacctga 504 || ||||| || ||||| ||||||||||| Sbjct: 1307 gagactgcggctgcgaatatgaaacctga 1279
>ref|NM_102885.2| Arabidopsis thaliana unknown protein AT1G31460 mRNA, complete cds Length = 1824 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgtcact 475 |||||||| ||||| ||||| ||||| | |||||| ||||||||||| || ||||| | Sbjct: 154 gtgatgagaatgttgtggttaacacctacgctattgggtccaaagagatcagatgttatg 95 Query: 476 gacactgccgcagcgaagatgaaacctga 504 || ||||| || ||||| ||||||||||| Sbjct: 94 gagactgcggctgcgaatatgaaacctga 66
>gb|AC027135.6|AC027135 Arabidopsis thaliana chromosome 1 BAC T8E3 genomic sequence, complete sequence Length = 80139 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgtcact 475 |||||||| ||||| ||||| ||||| | |||||| ||||||||||| || ||||| | Sbjct: 25807 gtgatgagaatgttgtggttaacacctacgctattgggtccaaagagatcagatgttatg 25866 Query: 476 gacactgccgcagcgaagatgaaacctga 504 || ||||| || ||||| ||||||||||| Sbjct: 25867 gagactgcggctgcgaatatgaaacctga 25895
>gb|BT020457.1| Arabidopsis thaliana At5g45275 mRNA, complete cds Length = 1713 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgt 471 |||||||||||||| ||||| || || | |||||| |||||||| ||||| ||||| Sbjct: 1463 gtgatgaggatgttgtggttaaccccaacgctattgggtccaaaaagctcagatgt 1408
>ref|NM_203157.1| Arabidopsis thaliana unknown protein AT5G45275 mRNA, complete cds Length = 1924 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgt 471 |||||||||||||| ||||| || || | |||||| |||||||| ||||| ||||| Sbjct: 1603 gtgatgaggatgttgtggttaaccccaacgctattgggtccaaaaagctcagatgt 1548
>gb|BT020278.1| Arabidopsis thaliana At5g45275 mRNA, complete cds Length = 1862 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgt 471 |||||||||||||| ||||| || || | |||||| |||||||| ||||| ||||| Sbjct: 1560 gtgatgaggatgttgtggttaaccccaacgctattgggtccaaaaagctcagatgt 1505
>emb|AL583830.7| Human DNA sequence from clone RP11-172L10 on chromosome 1 Contains the 5' end of a variant of the KCNK2 gene for potassium channel subfamily K member 2 and a translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene, complete sequence Length = 151469 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 97 gacttcagaacagtgaggaacaaa 120 |||||||||||||||||||||||| Sbjct: 95361 gacttcagaacagtgaggaacaaa 95384
>gb|AC099563.3| Homo sapiens chromosome 1 clone RP11-323K10, complete sequence Length = 91282 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 97 gacttcagaacagtgaggaacaaa 120 |||||||||||||||||||||||| Sbjct: 57944 gacttcagaacagtgaggaacaaa 57921
>emb|BX832700.1|CNS0A13F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH90ZF06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1885 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgt 471 |||||||||||||| ||||| || || | |||||| |||||||| ||||| ||||| Sbjct: 1564 gtgatgaggatgttgtggttaaccccaacgctattgggtccaaaaagctcagatgt 1509
>dbj|AB020744.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9E15 Length = 62052 Score = 48.1 bits (24), Expect = 0.037 Identities = 48/56 (85%) Strand = Plus / Plus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcggatgt 471 |||||||||||||| ||||| || || | |||||| |||||||| ||||| ||||| Sbjct: 16184 gtgatgaggatgttgtggttaaccccaacgctattgggtccaaaaagctcagatgt 16239
>ref|NM_111029.3| Arabidopsis thaliana unknown protein AT3G01630 mRNA, complete cds Length = 1875 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcgga 468 |||||||||||||| ||||| ||||||| || || |||||||||| ||||| Sbjct: 1449 gtgatgaggatgttctggttgacaccgacactgttgcgtccaaagagttcgga 1397
>gb|AC149544.1| Populus trichocarpa clone Pop1-69J1, complete sequence Length = 94430 Score = 42.1 bits (21), Expect = 2.3 Identities = 81/101 (80%) Strand = Plus / Plus Query: 407 gggatattggtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcg 466 |||||||||||||| || ||||| || || ||||| | |||||||| ||||| ||||| Sbjct: 21488 gggatattggtgataagaatgttgtgattgacacctacactatttggcccaaatagctca 21547 Query: 467 gatgtcactgacactgccgcagcgaagatgaaacctgagct 507 || || | ||| ||||| || || |||||||| || ||||| Sbjct: 21548 gaagttattgaaactgctgcggcaaagatgaacccagagct 21588
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence Length = 105543 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcgga 468 |||||||||||||| ||||| ||||||| || || |||||||||| ||||| Sbjct: 60678 gtgatgaggatgttctggttgacaccgacactgttgcgtccaaagagttcgga 60626
>emb|BX927415.8| Zebrafish DNA sequence from clone CH211-1B13 in linkage group 1, complete sequence Length = 202881 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 319 gccagtgagtttgtccagtac 339 ||||||||||||||||||||| Sbjct: 35746 gccagtgagtttgtccagtac 35766
>dbj|AK126050.1| Homo sapiens cDNA FLJ44062 fis, clone TESTI4035602 Length = 5133 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 558 tccacattaagaagaaagcaactgg 582 |||||||||||||||||| |||||| Sbjct: 771 tccacattaagaagaaagaaactgg 747
>gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome 13, complete sequence Length = 194915 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 tcgtgcaatttccacattaag 568 ||||||||||||||||||||| Sbjct: 117905 tcgtgcaatttccacattaag 117885
>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC library) complete sequence Length = 123203 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 558 tccacattaagaagaaagcaactgg 582 |||||||||||||||||| |||||| Sbjct: 58931 tccacattaagaagaaagaaactgg 58955
>gb|BT004270.1| Arabidopsis thaliana clone RAFL15-43-P08 (R50091) unknown protein (At3g01630) mRNA, partial cds Length = 1900 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 416 gtgatgaggatgttatggttcacaccgatgctatttggtccaaagagctcgga 468 |||||||||||||| ||||| ||||||| || || |||||||||| ||||| Sbjct: 1448 gtgatgaggatgttctggttgacaccgacactgttgcgtccaaagagttcgga 1396
>gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome 14, complete sequence Length = 207264 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gagttcctttctcaactcaa 144 |||||||||||||||||||| Sbjct: 68262 gagttcctttctcaactcaa 68243
>gb|AC124462.2| Mus musculus BAC clone RP24-146O4 from chromosome 14, complete sequence Length = 133903 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gagttcctttctcaactcaa 144 |||||||||||||||||||| Sbjct: 82548 gagttcctttctcaactcaa 82529
>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence Length = 128493 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 actcttcaatccatttgcat 362 |||||||||||||||||||| Sbjct: 56082 actcttcaatccatttgcat 56101
>ref|XM_499645.1| Yarrowia lipolytica CLIB122, YALI0A01155g predicted mRNA Length = 1227 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 ttggtgatgaggatgttatggttc 436 |||||||||||||||| ||||||| Sbjct: 1142 ttggtgatgaggatgtcatggttc 1165
>emb|AM050263.1| Bombyx mori mRNA for putative H3K9 methyltransferase (su(var)3-9 gene) Length = 1919 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 tcaatccatttgcatcatat 367 |||||||||||||||||||| Sbjct: 1413 tcaatccatttgcatcatat 1394
>emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-471B22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178834 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 agccaagagggatattggtgatga 422 |||||||||||| ||||||||||| Sbjct: 6500 agccaagagggacattggtgatga 6523
>emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-439L12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197369 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 agccaagagggatattggtgatga 422 |||||||||||| ||||||||||| Sbjct: 154486 agccaagagggacattggtgatga 154509
>emb|CT030150.14| Mouse DNA sequence from clone RP23-414I13 on chromosome 14, complete sequence Length = 105716 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gagttcctttctcaactcaa 144 |||||||||||||||||||| Sbjct: 48192 gagttcctttctcaactcaa 48173
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 ttggtgatgaggatgttatggttc 436 |||||||||||||||| ||||||| Sbjct: 161762 ttggtgatgaggatgtcatggttc 161785 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,225,980 Number of Sequences: 3902068 Number of extensions: 5225980 Number of successful extensions: 88275 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88113 Number of HSP's gapped (non-prelim): 161 length of query: 659 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 636 effective length of database: 17,143,297,704 effective search space: 10903137339744 effective search space used: 10903137339744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)