>AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocrinopathy|
           candidiasis ectodermal dystrophy protein homolog)
           (APECED protein homolog)
          Length = 552

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 356 VRSSPCEVRLKFREEQK-GQXSGDQGLLHLPRAIRLSLKRQDRPRAEEAEYXS*CSVCAD 180
           VR+   +V +  R+EQK GQ  G   L  LP   +++ K +D            C+VC D
Sbjct: 258 VRAKGAQVTIPGRDEQKVGQQCGVPPLPSLPSEPQVNQKNEDE-----------CAVCHD 306

Query: 179 GGQ 171
           GG+
Sbjct: 307 GGE 309

>HXA7_MORSA (Q9PWD4) Homeobox protein Hox-A7|
          Length = 225

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 105 YWQGASRATLSCSLRNQARILCDTC 31
           Y QG    TL CSL +Q+R+  D+C
Sbjct: 73  YGQGQDAHTLHCSLFDQSRLFTDSC 97

>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)|
          Length = 734

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 298 RAAIKASSIFPEPSGSASKGKIDLALKRRNI 206
           +A+    S FPEP GSA K K+   LK +++
Sbjct: 652 KASPAHQSFFPEPKGSAPKSKVPGLLKSQSV 682

>KPCD1_MOUSE (Q62101) Serine/threonine-protein kinase D1 (EC 2.7.11.13)|
           (nPKC-D1) (Protein kinase D) (Protein kinase C mu type)
           (nPKC-mu)
          Length = 918

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 302 QXSGDQGLLHLPRAIRLSLKRQDRPRAEEAE 210
           Q +G+QGL +    I LS    D P AEE E
Sbjct: 877 QYAGEQGLQYPAHLISLSASHSDSPEAEERE 907

>RECQ1_CAEEL (P46064) Putative ATP-dependent DNA helicase Q1 (EC 3.6.1.-)|
          Length = 892

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 78  LSCSLRNQARILCDTCTSHAAL 13
           L+C +RNQ++ + DT T H +L
Sbjct: 347 LACKIRNQSKTIMDTITRHPSL 368

>Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)|
          Length = 445

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 16  SSMTGTGITKYSCLIAQGTTQGG 84
           +S+ G GIT+  C IA+G+ +GG
Sbjct: 345 ASVAGDGITEAECRIAKGSLRGG 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,186,857
Number of Sequences: 219361
Number of extensions: 569077
Number of successful extensions: 1449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)