>gb|AF498270.1| Haynaldia villosa clone kong36 mRNA
          Length = 1083

 Score =  355 bits (179), Expect = 6e-95
 Identities = 288/324 (88%), Gaps = 3/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 47  attcttgcttgattgcgcaaggaacaactcagggtg--gctctacttgcgccttgccaat 104
           ||||||||||| ||||||||| | |||||| |||||  ||||||||||||||||||||||
Sbjct: 814 attcttgcttggttgcgcaagca-caactcggggtgtggctctacttgcgccttgccaat 756

                                                                       
Query: 105 atcggcacggnagtccttgcattntcagaaccggagctgtgncgtgaccacgacgacggc 164
           |||||||| | |||||||||| |  ||||||||| ||| || || |||||||||||||||
Sbjct: 755 atcggcacagcagtccttgcacttccagaaccggtgctctgccgcgaccacgacgacggc 696

                                                                       
Query: 165 ttcgccctgcccgccatcagcgcanacgctgcactagctnttatattccgcctcttcagc 224
           || ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||
Sbjct: 695 tttgccctgcccgccatcagcgccgacgctgcactagcttttatattccgcctcttcagc 636

                                                                       
Query: 225 gcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatggaggaggcc 284
           || ||||||| |||| |||| || |||||||| |||||||| ||||||||||||| ||||
Sbjct: 635 gcaaggtctagcttgtctttcgaagctgagcctgatggctccgggaagatggaggcggcc 576

                                                                       
Query: 285 ttgatcgccgctctnttgtcctttctgctcttctcgaaatttgaggcgaacctcacacgg 344
           |||||||| ||||| |||||||| ||| ||||||||||||| ||||||||||||||||| 
Sbjct: 575 ttgatcgctgctctcttgtccttcctgttcttctcgaaattcgaggcgaacctcacacga 516

                                   
Query: 345 gctgctgcggacgcatcctctgcg 368
           ||||| ||||  ||||||||||||
Sbjct: 515 gctgcagcggcagcatcctctgcg 492

>ref|XM_465274.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1323

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 150/186 (80%)
 Strand = Plus / Minus

                                                                        
Query: 156  gacgacggcttcgccctgcccgccatcagcgcanacgctgcactagctnttatattccgc 215
            |||||||||||| |||||| ||||||||||||  | || |||| |||| ||||||| |||
Sbjct: 1017 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 958

                                                                        
Query: 216  ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 275
            |||||||| || || || | ||||   ||||| | |||||  |||| ||| |||||||||
Sbjct: 957  ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 898

                                                                        
Query: 276  gaggaggccttgatcgccgctctnttgtcctttctgctcttctcgaaatttgaggcgaac 335
            || |  ||||| || || ||||| |||||| ||||||||||||| || ||||| || |||
Sbjct: 897  gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 838

                  
Query: 336  ctcaca 341
             |||||
Sbjct: 837  ttcaca 832

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 150/186 (80%)
 Strand = Plus / Minus

                                                                            
Query: 156      gacgacggcttcgccctgcccgccatcagcgcanacgctgcactagctnttatattccgc 215
                |||||||||||| |||||| ||||||||||||  | || |||| |||| ||||||| |||
Sbjct: 13011838 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 13011779

                                                                            
Query: 216      ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 275
                |||||||| || || || | ||||   ||||| | |||||  |||| ||| |||||||||
Sbjct: 13011778 ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 13011719

                                                                            
Query: 276      gaggaggccttgatcgccgctctnttgtcctttctgctcttctcgaaatttgaggcgaac 335
                || |  ||||| || || ||||| |||||| ||||||||||||| || ||||| || |||
Sbjct: 13011718 gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 13011659

                      
Query: 336      ctcaca 341
                 |||||
Sbjct: 13011658 ttcaca 13011653

>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0688H12
          Length = 139279

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 150/186 (80%)
 Strand = Plus / Minus

                                                                          
Query: 156    gacgacggcttcgccctgcccgccatcagcgcanacgctgcactagctnttatattccgc 215
              |||||||||||| |||||| ||||||||||||  | || |||| |||| ||||||| |||
Sbjct: 121481 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 121422

                                                                          
Query: 216    ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 275
              |||||||| || || || | ||||   ||||| | |||||  |||| ||| |||||||||
Sbjct: 121421 ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 121362

                                                                          
Query: 276    gaggaggccttgatcgccgctctnttgtcctttctgctcttctcgaaatttgaggcgaac 335
              || |  ||||| || || ||||| |||||| ||||||||||||| || ||||| || |||
Sbjct: 121361 gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 121302

                    
Query: 336    ctcaca 341
               |||||
Sbjct: 121301 ttcaca 121296

>dbj|AK068494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156M22, full
            insert sequence
          Length = 1323

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 150/186 (80%)
 Strand = Plus / Minus

                                                                        
Query: 156  gacgacggcttcgccctgcccgccatcagcgcanacgctgcactagctnttatattccgc 215
            |||||||||||| |||||| ||||||||||||  | || |||| |||| ||||||| |||
Sbjct: 1017 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 958

                                                                        
Query: 216  ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 275
            |||||||| || || || | ||||   ||||| | |||||  |||| ||| |||||||||
Sbjct: 957  ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 898

                                                                        
Query: 276  gaggaggccttgatcgccgctctnttgtcctttctgctcttctcgaaatttgaggcgaac 335
            || |  ||||| || || ||||| |||||| ||||||||||||| || ||||| || |||
Sbjct: 897  gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 838

                  
Query: 336  ctcaca 341
             |||||
Sbjct: 837  ttcaca 832

>gb|AY107525.1| Zea mays PCO115693 mRNA sequence
          Length = 726

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 152 ccacgacgacggcttcgccctgcccgccatcagcgcanacgctgcactagctnttatatt 211
           |||||| ||||||||| ||||||| |||||||| ||    || || | |||| |||| ||
Sbjct: 521 ccacgaggacggcttcaccctgcctgccatcagtgctgtagcggctccagcttttatgtt 462

                                
Query: 212 ccgcctcttcagcgcgaggtc 232
           ||||||||||||| |||||||
Sbjct: 461 ccgcctcttcagcacgaggtc 441

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 163     gcttcgccctgcccgccatcagcgc 187
               ||||||||||| |||||||||||||
Sbjct: 4410692 gcttcgccctggccgccatcagcgc 4410716

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 163     gcttcgccctgcccgccatcagcgc 187
               ||||||||||| |||||||||||||
Sbjct: 4412383 gcttcgccctggccgccatcagcgc 4412407

>gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome 6, complete sequence
          Length = 252503

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    tggctctgggaagatggagg 279
              ||||||||||||||||||||
Sbjct: 130373 tggctctgggaagatggagg 130354

>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 36      tatcacaaagtattcttgct 55
               ||||||||||||||||||||
Sbjct: 1477841 tatcacaaagtattcttgct 1477860

>emb|CR607262.1| full-length cDNA clone CS0DC012YG09 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1649

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 392 gccggatggctctgggaaga 373

>emb|CR604478.1| full-length cDNA clone CS0DC024YC08 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1284

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 37  gccggatggctctgggaaga 18

>emb|CR600761.1| full-length cDNA clone CS0DD003YI02 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1658

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 394 gccggatggctctgggaaga 375

>emb|CR596068.1| full-length cDNA clone CS0DD006YF08 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1651

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 398 gccggatggctctgggaaga 379

>emb|CR593042.1| full-length cDNA clone CS0DC024YB09 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1663

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 394 gccggatggctctgggaaga 375

>ref|NM_005169.2| Homo sapiens paired-like (aristaless) homeobox 2a (PHOX2A), mRNA
          Length = 1700

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 405 gccggatggctctgggaaga 386

>gb|AF182067.1|AF182067S1 Mus musculus secretory protein BV8 (Bv8) gene, exons 1 and 2
          Length = 12920

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  tggctctgggaagatggagg 279
            ||||||||||||||||||||
Sbjct: 6954 tggctctgggaagatggagg 6935

>gb|BC041564.1| Homo sapiens paired-like (aristaless) homeobox 2a, mRNA (cDNA clone
           MGC:52227 IMAGE:5923445), complete cds
          Length = 1698

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 403 gccggatggctctgggaaga 384

>dbj|AP000593.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-4J8, complete
             sequence
          Length = 124635

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   gccggatggctctgggaaga 273
             ||||||||||||||||||||
Sbjct: 30118 gccggatggctctgggaaga 30137

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     cgccctgcccgccatcagcg 186
               ||||||||||||||||||||
Sbjct: 3400711 cgccctgcccgccatcagcg 3400692

>gb|AF022723.1|HOMOARIX2 Homo sapiens Arix homeodomain protein (ARIX) gene, exon 2
          Length = 510

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 gccggatggctctgggaaga 273
           ||||||||||||||||||||
Sbjct: 210 gccggatggctctgggaaga 191


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,047,476
Number of Sequences: 3902068
Number of extensions: 2047476
Number of successful extensions: 42828
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42724
Number of HSP's gapped (non-prelim): 99
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)