ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1g18 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 205 bits (522), Expect = 3e-53 Identities = 100/113 (88%), Positives = 104/113 (92%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKPE FSG FLVPSYRGSSFL PKGRGGSTGYDNAVA PAGGRGDEE L KENVKN S Sbjct: 220 ASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTS 279 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 SSTG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 280 SSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 204 bits (518), Expect = 9e-53 Identities = 98/113 (86%), Positives = 104/113 (92%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 ATGKPE FSG +LVPSYRGSSFL PKGRGGS GYDNAVA PAGGRGDEE L KEN+K+ S Sbjct: 217 ATGKPESFSGSYLVPSYRGSSFLDPKGRGGSAGYDNAVALPAGGRGDEEELVKENIKDVS 276 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 SSTG ITLSVTKSKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 277 SSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 202 bits (513), Expect = 3e-52 Identities = 98/113 (86%), Positives = 103/113 (91%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKPE FSG FLVPSYRGSSFL PKGRGGSTGYDNAVA PAGGRGDEE L KENVKN + Sbjct: 217 ASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTA 276 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 S TG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 277 SLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 199 bits (505), Expect = 3e-51 Identities = 95/113 (84%), Positives = 102/113 (90%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKPE FSG FLVPSYRGSSFL PKGRGGSTGYDNAVA PAGGRGDEE L+KENVKN + Sbjct: 219 ASGKPESFSGKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELSKENVKNTA 278 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 +S G ITL +TKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 279 ASVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 198 bits (503), Expect = 5e-51 Identities = 97/114 (85%), Positives = 104/114 (91%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKP+ FSG FLVPSYRGSSFL PKGRG STGYDNAVA PAGGRGDEE L KEN K+A+ Sbjct: 216 ASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAA 275 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 79 SS G ITLSVT++KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 276 SSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 197 bits (501), Expect = 8e-51 Identities = 103/114 (90%), Positives = 104/114 (91%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 ATGKPE F PFLVPSYRGSSFL PKGRGGSTGYDNA A P GGRGDEE LAKENVKNAS Sbjct: 214 ATGKPESFR-PFLVPSYRGSSFLDPKGRGGSTGYDNAGALPRGGRGDEEELAKENVKNAS 272 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 79 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL +APKDVKIQGVWYAQLES Sbjct: 273 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLES 324
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 197 bits (501), Expect = 8e-51 Identities = 95/113 (84%), Positives = 101/113 (89%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKP+ F+G FLVPSYRGSSFL PKGRGGSTGYDNAVA PAGGRGDEE L KENVKN + Sbjct: 220 ASGKPDSFTGKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENVKNTA 279 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 +S G ITL VTKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 280 ASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 196 bits (498), Expect = 2e-50 Identities = 96/113 (84%), Positives = 101/113 (89%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKPE FSG FLVPSYRGSSFL PKGRGGSTGYDNAVA PAGGRGDEE L KEN KN + Sbjct: 218 ASGKPESFSGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVA 277 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 SS G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 278 SSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 196 bits (497), Expect = 2e-50 Identities = 95/114 (83%), Positives = 101/114 (88%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+GKPE FS FLVPSYRGSSFL PKGRGGSTGYDNAVA PAGGRGDEE L KENVKN + Sbjct: 220 ASGKPESFSVDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTA 279 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 79 S TG IT +VTKS P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 280 SLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 146 bits (368), Expect = 2e-35 Identities = 73/111 (65%), Positives = 82/111 (73%) Frame = -2 Query: 414 GKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSS 235 G + G FLVPSYRGSSFL PKGRGGSTGYDNAVA PA R D E L KENVK + Sbjct: 183 GTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITKAL 240 Query: 234 TGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 G+ SV K P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 241 KGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 142 bits (359), Expect = 2e-34 Identities = 71/110 (64%), Positives = 80/110 (72%) Frame = -2 Query: 414 GKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSS 235 G + G F+VPSYRGSSFL PKGRGGSTGYDNAVA PA R D E L KENVK+ + Sbjct: 184 GTLDNIKGDFVVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKSTKAL 241 Query: 234 TGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 85 G+ SV K TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 242 KGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 140 bits (354), Expect = 9e-34 Identities = 69/112 (61%), Positives = 81/112 (72%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A G F G F VPSYRG++FL PKGRGG++GYD AVA PA G D+E AKEN K+ + Sbjct: 225 AKGDAGQFLGQFDVPSYRGATFLDPKGRGGASGYDTAVALPASG--DDEEYAKENSKSTA 282 Query: 240 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 85 +S G I V K ETGE+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 283 ASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 121 bits (304), Expect = 6e-28 Identities = 60/106 (56%), Positives = 76/106 (71%) Frame = -2 Query: 399 FSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNIT 220 F G F VPSYRG++FL PKGRG +GYDNAVA PA + D+E L + NVK A G I+ Sbjct: 170 FEGTFKVPSYRGAAFLDPKGRGVVSGYDNAVALPA--QADDEDLTRTNVKRAEILNGKIS 227 Query: 219 LSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 L + K +GE+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 228 LQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 117 bits (293), Expect = 1e-26 Identities = 62/105 (59%), Positives = 76/105 (72%) Frame = -2 Query: 399 FSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNIT 220 F G F VPSYRG++FL PKGRG +TGYDNAVA PA D+E A NVK G+I+ Sbjct: 171 FEGDFRVPSYRGATFLDPKGRGLATGYDNAVALPA--TADKEDYA--NVKQTPIGKGSIS 226 Query: 219 LSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 85 L VTK TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 227 LQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 109 bits (272), Expect = 3e-24 Identities = 57/106 (53%), Positives = 73/106 (68%) Frame = -2 Query: 399 FSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNIT 220 F G F VPSYR ++FL PKGRG ++GYD+A+A P + EE LA+ NVK S + G I+ Sbjct: 168 FKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQIS 224 Query: 219 LSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 L+V K TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 225 LNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 109 bits (272), Expect = 3e-24 Identities = 57/106 (53%), Positives = 73/106 (68%) Frame = -2 Query: 399 FSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNIT 220 F G F VPSYR ++FL PKGRG ++GYD+A+A P + EE LA+ NVK S + G I+ Sbjct: 168 FKGEFNVPSYRTANFLDPKGRGLASGYDSAIALP---QAKEEELARANVKRFSLTKGQIS 224 Query: 219 LSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 L+V K TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 225 LNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 107 bits (266), Expect = 1e-23 Identities = 55/104 (52%), Positives = 72/104 (69%) Frame = -2 Query: 393 GPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNITLS 214 G + VPSYR S+FL PK RG +TGY++AVA P+ G D E L KENVK + G I+L+ Sbjct: 172 GGYRVPSYRTSNFLDPKARGLTTGYESAVAIPSAG--DAEDLTKENVKRFVTGQGEISLA 229 Query: 213 VTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 82 V+K TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 230 VSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 105 bits (261), Expect = 6e-23 Identities = 53/107 (49%), Positives = 69/107 (64%) Frame = -2 Query: 399 FSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNIT 220 F G F VPSYRG+ FL PK RG TGYDNAVA P+ + N K G ++ Sbjct: 171 FVGDFNVPSYRGAGFLDPKARGLYTGYDNAVALPSAA-----DKFRTNKKETPLGKGTLS 225 Query: 219 LSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 79 L VT+ TGE+ G+FES QPSDTDLGAK P DVK++G++Y ++++ Sbjct: 226 LQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDT 272
>PSBO_PINPS (P81665) Oxygen-evolving enhancer protein 1 (OEE1) (33 kDa subunit| of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (Fragments) Length = 26 Score = 38.5 bits (88), Expect = 0.007 Identities = 16/20 (80%), Positives = 18/20 (90%) Frame = -2 Query: 345 KGRGGSTGYDNAVAXPAGGR 286 + +GGSTGYDNAVA PAGGR Sbjct: 7 QSKGGSTGYDNAVALPAGGR 26
>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 34.3 bits (77), Expect = 0.12 Identities = 23/54 (42%), Positives = 28/54 (51%) Frame = -2 Query: 270 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 109 +AKE K G + SV K KP+TGEVI V E + G K P +VKI Sbjct: 13 VAKEEEKTVG---GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60
>DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 2) Length = 662 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -2 Query: 291 GRGDEEXLAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQ 157 G+ E + +N+KN+ NI T S PET E+I +Q Sbjct: 405 GKKQESSCSSQNIKNSDIEDDNIVPKATASIPETEELIAPGTPIQ 449
>LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA| Length = 598 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = +2 Query: 35 HAQKMSIFTSAMLXLDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 214 +A ++ IFT + D W++ ++ + V D TL++ P P+ G V Sbjct: 233 NADRLGIFTPKRVDRDVLGCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKPLPGFKKVK 292 Query: 215 LRV---MLPVEEDAFFTF 259 +V + PV D + F Sbjct: 293 PQVYAGLFPVSSDDYEAF 310
>PMP2_CHLPN (Q9Z3A1) Probable outer membrane protein pmp2 precursor| (Polymorphic membrane protein 2) (Outer membrane protein 7) Length = 841 Score = 28.9 bits (63), Expect = 5.2 Identities = 20/70 (28%), Positives = 27/70 (38%) Frame = -2 Query: 336 GGSTGYDNAVAXPAGGRGDEEXLAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQ 157 GG T + A A G+G +A + S +G+I G IG +V Sbjct: 214 GGETLFQGNTAPTAAGKGGAIAIADSGTLSISGDSGDIIFE--------GNTIGATGTVS 265 Query: 156 PSDTDLGAKA 127 S DLG A Sbjct: 266 HSAIDLGTSA 275
>LEPA_YERPS (Q667U9) GTP-binding protein lepA| Length = 599 Score = 28.9 bits (63), Expect = 5.2 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Frame = +2 Query: 20 TNPRXHAQKMSIFTSAMLXLDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSG 199 T +A ++ IFT + D W++ ++ + V D TL++ P + G Sbjct: 228 TGQSYNADRLGIFTPKRVDRDVLNCGEVGWLVCAIKDILGAPVGDTLTLTRNPAEKSLPG 287 Query: 200 LLLVTLRV---MLPVEEDAFFTF 259 V +V + P+ D + +F Sbjct: 288 FKKVKPQVYAGLFPISSDDYESF 310
>LEPA_YERPE (Q8ZD74) GTP-binding protein lepA| Length = 599 Score = 28.9 bits (63), Expect = 5.2 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Frame = +2 Query: 20 TNPRXHAQKMSIFTSAMLXLDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSG 199 T +A ++ IFT + D W++ ++ + V D TL++ P + G Sbjct: 228 TGQSYNADRLGIFTPKRVDRDVLNCGEVGWLVCAIKDILGAPVGDTLTLTRNPAEKSLPG 287 Query: 200 LLLVTLRV---MLPVEEDAFFTF 259 V +V + P+ D + +F Sbjct: 288 FKKVKPQVYAGLFPISSDDYESF 310
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -2 Query: 222 TLSVTKSKPETGEVIGVFESVQPSD 148 +LSV+K+K E EV+GV E VQ SD Sbjct: 52 SLSVSKAKKEGFEVLGVKELVQQSD 76
>EBI_DROME (Q95RJ9) F-box-like/WD repeat protein ebi| Length = 700 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%) Frame = -2 Query: 366 GSSFLXPKGRGG---STGYDNAVAXPAGG----RGDEEXLAKENVKNASSSTGN 226 G ++ G GG STG N+ + PAGG G + ++ + + SSS+GN Sbjct: 170 GGTYAGNNGAGGNQASTGGSNSTSTPAGGDLAAPGASQKKSQNSNEAGSSSSGN 223
>MSH3_HUMAN (P20585) DNA mismatch repair protein Msh3 (Divergent upstream| protein) (DUP) (Mismatch repair protein 1) (MRP1) Length = 1137 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = -2 Query: 264 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPS 151 KENV++ GNI + + +P TGEV VF+S Q S Sbjct: 375 KENVRDKKK--GNIFIGIVGVQPATGEV--VFDSFQDS 408
>LEPA_ERWCT (Q6D217) GTP-binding protein lepA| Length = 599 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Frame = +2 Query: 35 HAQKMSIFTSAMLXLDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 214 +A ++ IFT + D W++ ++ + V D TL++ P + G V Sbjct: 233 NADRLGIFTPKQIDRDVLNCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKALPGFKKVK 292 Query: 215 LRV---MLPVEEDAFFTF 259 +V + P+ D + F Sbjct: 293 PQVYAGLFPISSDDYEAF 310
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +1 Query: 7 FLSTDQPTXACTKDEYL--HFCYALXRLELRVPHTLDLDILG 126 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138
>CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groES protein 3)| Length = 105 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/47 (40%), Positives = 21/47 (44%) Frame = -2 Query: 249 NASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 109 N S G I K KP+ GEVI V S + G P DVKI Sbjct: 18 NTQSKGGIIIPDTAKEKPQEGEVIAVGPG---SRDESGKLIPLDVKI 61
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = -2 Query: 420 ATGKPEXFSGPFLVPSYRGSSFLXPKGRGGSTGYDNAVAXPAGGRGDEEXLAKENVKNAS 241 A+G PE GP + G S P G G + V G +E + + NAS Sbjct: 845 ASGGPES-GGPEHISQDNGISSSGPTGAAGMHAVTSVVTTGPDGTSMDEVSQQSTLSNAS 903 Query: 240 SSTG 229 +++G Sbjct: 904 AASG 907
>SDHD_BACHK (Q6HKG3) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 446 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 270 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 163 L++ENVK+A + K PET E G+ ES Sbjct: 42 LSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77
>SDHD_BACCZ (Q63D23) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 446 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 270 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 163 L++ENVK+A + K PET E G+ ES Sbjct: 42 LSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77
>NFYA6_ARATH (Q9LVJ7) Nuclear transcription factor Y subunit A-6 (AtNF-YA-6)| Length = 308 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 282 DEEXLAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDT 145 D NV+ +SS T N TLS+T +TG + ++S T Sbjct: 19 DNSVFTNSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQST 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,044,090 Number of Sequences: 219361 Number of extensions: 764106 Number of successful extensions: 3008 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2996 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
