ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1g16 |
|---|---|
| Clone Library Name | barley_pub |
>DMD_CANFA (O97592) Dystrophin| Length = 3680 Score = 35.4 bits (80), Expect = 0.13 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -3 Query: 555 PREEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPREEVLAGKGEDW-RKIDEK 379 PRE + +N+T+ + KQ EE+ Q W E L DW RKIDE Sbjct: 2883 PRELPPEERAQNVTRLLRKQAEEVNTQ-----W----------EKLNVHSADWQRKIDEA 2927 Query: 378 LEAL-KVREAPPEVKSSGRRGSPVQGEENENGEVLERSTDSAWKKPTAV*AEV 223 LE L +++EA E+ R+ ++G G++L S +K A+ E+ Sbjct: 2928 LERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEI 2980
>DMD_MOUSE (P11531) Dystrophin| Length = 3678 Score = 34.3 bits (77), Expect = 0.29 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -3 Query: 555 PREEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPREEVLAGKGEDW-RKIDEK 379 PRE + +N+T+ + KQ EE+ + W+ + DW RKIDE Sbjct: 2881 PRELPPEERAQNVTRLLRKQAEEVNAE-----WDKLNL----------RSADWQRKIDEA 2925 Query: 378 LEAL-KVREAPPEVKSSGRRGSPVQGEENENGEVLERSTDSAWKKPTAV*AEV 223 LE L +++EA E+ R+ ++G G++L S +K A+ E+ Sbjct: 2926 LERLQELQEAADELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEI 2978
>DMD_HUMAN (P11532) Dystrophin| Length = 3685 Score = 33.9 bits (76), Expect = 0.38 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Frame = -3 Query: 555 PREEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPREEVLAGKGEDW-RKIDEK 379 PRE + +N+T+ + KQ EE+ + W E L DW RKIDE Sbjct: 2888 PRELPPEERAQNVTRLLRKQAEEVNTE-----W----------EKLNLHSADWQRKIDET 2932 Query: 378 LEAL-KVREAPPEVKSSGRRGSPVQGEENENGEVLERSTDSAWKKPTAV*AEV 223 LE L +++EA E+ R+ ++G G++L S +K A+ E+ Sbjct: 2933 LERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEI 2985
>TEGU_EHV1B (P28955) Large tegument protein| Length = 3421 Score = 33.5 bits (75), Expect = 0.50 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +3 Query: 342 PQVVPHAPSGPQASHQSSSNLPPSQQALPPVGGLPQTDSK 461 P +P AP PQ++ +++S PP+ LPP LPQ+ SK Sbjct: 2588 PPTLPPAPPLPQSTSKAASGPPPT---LPPAPPLPQSTSK 2624 Score = 33.5 bits (75), Expect = 0.50 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +3 Query: 342 PQVVPHAPSGPQASHQSSSNLPPSQQALPPVGGLPQTDSK 461 P +P AP PQ++ +++S PP+ LPP LPQ+ SK Sbjct: 2567 PPTLPPAPPLPQSTSKAASGPPPT---LPPAPPLPQSTSK 2603 Score = 33.5 bits (75), Expect = 0.50 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +3 Query: 342 PQVVPHAPSGPQASHQSSSNLPPSQQALPPVGGLPQTDSK 461 P +P AP PQ++ +++S PP+ LPP LPQ+ SK Sbjct: 2546 PPTLPPAPPLPQSTSKAASGPPPT---LPPAPPLPQSTSK 2582
>DMD_PIG (Q5GN48) Dystrophin| Length = 3674 Score = 32.7 bits (73), Expect = 0.85 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Frame = -3 Query: 555 PREEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPREEVLAGKGEDW-RKIDEK 379 PRE + +N+T+ + KQ EE+ + W E L DW RKIDE Sbjct: 2877 PRELPPEERAQNVTRLLRKQAEEVNTE-----W----------EKLNLHSADWQRKIDEA 2921 Query: 378 LEAL-KVREAPPEVKSSGRRGSPVQGEENENGEVLERSTDSAWKKPTAV*AE 226 LE L +++EA E+ R+ ++G G++L S +K A+ E Sbjct: 2922 LERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGE 2973
>IF4F1_YEAST (P39935) Eukaryotic initiation factor 4F subunit p150 (eIF4F p150)| (eIF-4F p150) (mRNA cap-binding protein complex subunit p150) Length = 952 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 411 KGEDWRKIDEKLEALKVREAPPEVKSSGRRGSPVQGEENENGEVLERST 265 KG D ++ EK + + + A PEVK + +GE+ E G++ E ST Sbjct: 249 KGSDKPEVTEKTKPAEEKSAEPEVK---QETPAEEGEQGEKGQIKEEST 294
>Y1873_AQUAE (O67720) Hypothetical protein aq_1873| Length = 407 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = -3 Query: 546 EVLAAKVENLTKEVYKQE-----EELVIQPKVRSWNPFGAXRPREEVLAGKGEDWRKIDE 382 E +A +VE + ++V K+E E V + KVR P + EE+ K E +I E Sbjct: 252 EAIAEEVEKVAQKVKKEEIKSMETEEVKEEKVREEIPEEVPQEVEEIKEEKPE-MSEIKE 310 Query: 381 KLEALKVREAPPE 343 K EA+ +E PE Sbjct: 311 KTEAISTKEKTPE 323
>EXOP_RHIME (P33698) Succinoglycan biosynthesis transport protein exoP| Length = 786 Score = 32.0 bits (71), Expect = 1.4 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%) Frame = -3 Query: 582 LANPFGAARPREEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPREEVL----- 418 +++ FGA P+ L A+ E++ +++Y++ ++L K N + + REE L Sbjct: 336 VSDNFGADHPQAVSLRAEQEDVARQIYQELQQLTASYK----NEYEVAQSREESLRKSIQ 391 Query: 417 --AGKGED-------WRKIDEKLEALK 364 AGK D R++++K ALK Sbjct: 392 GIAGKTSDASEQLVQLRELEQKAAALK 418
>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein) Length = 203 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = -3 Query: 432 REEVLAGKGEDWRKIDEKLEALKVREAPPEVK 337 RE+ GK ++ K+ EKLEAL VREA E + Sbjct: 165 REKKGPGKNDNAEKVAEKLEALSVREAREEAE 196
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 354 PHAPSGPQASHQSSSNLPPSQQALPPVGGLP 446 P P G Q H + PP Q +PPVG +P Sbjct: 313 PPPPPGAQQWHANQWGCPPPVQQVPPVGAVP 343
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 845 Score = 30.8 bits (68), Expect = 3.2 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Frame = -3 Query: 564 AARPREEVLAAKVENLT--KEVYKQEEELVIQPKVRSWNPFGAXRPREEVLAGKGE--DW 397 A E+ KVE + +E+ ++ E P +S P +P+ E AGK E + Sbjct: 572 AEAKEEKKTEGKVEEMAIKEEIKVEKPEKAKSPVPKS--PVEEVKPKPEAKAGKDEQKEE 629 Query: 396 RKIDEKLEALKVREAPPEVKSSGRRGSPVQGEENENGE 283 K++EK E K E+P E K + P + + E Sbjct: 630 EKVEEKKEVAK--ESPKEEKVEKKEEKPKDVPDKKKAE 665
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = +3 Query: 363 PSGPQASHQSSSNLPPSQQALPPVGGLPQ 449 P G Q S Q S PP+QQ PP GG PQ Sbjct: 171 PLGRQTSQQPSG--PPAQQRPPPQGGPPQ 197
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 342 PQVVPHAPSGPQASHQSSSNLPPSQQALPP 431 P+V P P PQ S S +PP LPP Sbjct: 775 PRVPPREPLSPQGSRTPSPLVPPGSSPLPP 804
>GSLG1_RAT (Q62638) Golgi apparatus protein 1 precursor (Golgi| sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) Length = 1171 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Frame = +3 Query: 363 PSGPQASHQSSSNLPPSQQALP-PVGGLP 446 P PQ S Q PP QQ P P GGLP Sbjct: 59 PQLPQLSQQQQQQQPPPQQQQPFPAGGLP 87
>PTPA2_EMENI (P0C153) Serine/threonine-protein phosphatase 2A activator 2 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2) (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl phosphatase activator 2) Length = 420 Score = 30.0 bits (66), Expect = 5.5 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 482 TSSSSCLYTSFVKFSTFAASTSSRGRAAPNGFARPAFGLQLS 607 T SS YT + F F S S RGRAAP+ A P + ++S Sbjct: 68 TFLSSSTYTLVLAF-IFGLSDSVRGRAAPDANAEPGYSPKIS 108
>PIP1_DROME (P25455) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| classes I and II (EC 3.1.4.11) (Phosphoinositide phospholipase C) Length = 1312 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/48 (29%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Frame = -3 Query: 435 PREEVLAGKG--EDWRKIDEKLEALKVREAPPEVKSSGRRGSPVQGEE 298 P E++L K E ++++KLE+L+ + ++K +G++ SP++G++ Sbjct: 991 PLEKILDHKSVKEKRLEMEKKLESLRKKHDKEKIKIAGQKSSPLEGKK 1038
>FHAB_BORPE (P12255) Filamentous hemagglutinin| Length = 3590 Score = 30.0 bits (66), Expect = 5.5 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Frame = -3 Query: 594 PKAGLANPFGAARPREEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPR----E 427 P+ A P+ EV AKVE + + + + L +P V A +P+ E Sbjct: 3335 PRPVAAQVVPVTPPKVEV--AKVEVVPRPKVETAQPLPPRPVVAEKVTTPAVQPQLAKVE 3392 Query: 426 EVLAGKGEDWRKIDEKLEALKVREAPPEVKSSGRRGSPVQGEENENGEVLE 274 V K E + + + L KV +APP V + + PV+ ++ G V E Sbjct: 3393 TVQPVKPETTKPLPKPLPVAKVTKAPPPVVETAQPLPPVKPQKATPGPVAE 3443
>R3HD2_HUMAN (Q9Y2K5) R3H domain-containing protein 2 (Fragment)| Length = 962 Score = 30.0 bits (66), Expect = 5.5 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 372 PQASHQSSSNLPPSQQALPPVG 437 P +++ +SS+ PP+QQ LPP G Sbjct: 473 PTSNYSTSSHAPPTQQVLPPQG 494
>R3HD2_MOUSE (Q80TM6) R3H domain-containing protein 2| Length = 1044 Score = 30.0 bits (66), Expect = 5.5 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 372 PQASHQSSSNLPPSQQALPPVG 437 P +++ +SS+ PP+QQ LPP G Sbjct: 555 PTSNYSTSSHAPPTQQVLPPQG 576
>HGD_DROME (Q9VKJ0) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)| (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) Length = 439 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +1 Query: 244 RFLPSAVSTPLQHFPVLVLLALDWGTPPPRGFNLRW 351 R LPSA P Q F + +W PP LRW Sbjct: 63 RKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRW 98
>SC11A_RAT (O88457) Sodium channel protein type 11 alpha subunit (Sodium| channel protein type XI alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.9) (Sensory neuron sodium channel 2) (NaN) Length = 1765 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 4/20 (20%) Frame = +1 Query: 532 CGKH----FLTWACSPKWVC 579 CGK+ +L W CSP+W+C Sbjct: 541 CGKNLASKYLVWDCSPQWLC 560
>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 9.4 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 17/127 (13%) Frame = -3 Query: 597 SPKAGLANPF-GAARPREEVLAAKVENLTKEVYKQE--------------EELVIQPKVR 463 +PK PF G+ P+ L E + +K+E E +PK Sbjct: 391 APKTDSEKPFRGSQSPKRYKLRDDFEKKMADFHKEELDEHDKDKSKGRKEPEFDDEPKFM 450 Query: 462 SWNPFGAXRPREEVLAGKGEDWRKIDEKLEALKVREAPPEVKSSGR--RGSPVQGEENEN 289 S GA + +EE +GK E EK + E P + S + RG + E Sbjct: 451 SKVIAGASKNQEEEKSGKWESLHTGKEKQRKAEEMEDEPFTERSRKEERGGSKRSESGHR 510 Query: 288 GEVLERS 268 G V E++ Sbjct: 511 GFVPEKN 517
>TR150_MOUSE (Q569Z6) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 29.3 bits (64), Expect = 9.4 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 17/127 (13%) Frame = -3 Query: 597 SPKAGLANPF-GAARPREEVLAAKVENLTKEVYKQE--------------EELVIQPKVR 463 +PK PF G+ P+ L E + +K+E E +PK Sbjct: 391 APKTDSEKPFRGSQSPKRYKLRDDFEKKMADFHKEELDEHDKDKSKGRKEPEFDDEPKFM 450 Query: 462 SWNPFGAXRPREEVLAGKGEDWRKIDEKLEALKVREAPPEVKSSGR--RGSPVQGEENEN 289 S GA + +EE +GK E EK + E P + S + RG + E Sbjct: 451 SKVIAGASKNQEEEKSGKWESLHTGKEKQRKAEEMEDEPFTERSRKEERGGSKRSESGHR 510 Query: 288 GEVLERS 268 G V E++ Sbjct: 511 GFVPEKN 517
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +3 Query: 363 PSGPQASHQSSSNLPPSQQALPPVGGLPQ 449 P G Q S Q + PP+QQ PP GG PQ Sbjct: 441 PLGRQTSQQPAG--PPAQQRPPPQGGPPQ 467
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +3 Query: 363 PSGPQASHQSSSNLPPSQQALPPVGGLPQ 449 P G Q S Q + PP+QQ PP GG PQ Sbjct: 443 PLGRQTSQQPAG--PPAQQRPPPQGGPPQ 469
>SRMB_ECOLI (P21507) ATP-dependent RNA helicase srmB (EC 3.6.1.-)| Length = 444 Score = 29.3 bits (64), Expect = 9.4 Identities = 22/79 (27%), Positives = 40/79 (50%) Frame = -3 Query: 549 EEVLAAKVENLTKEVYKQEEELVIQPKVRSWNPFGAXRPREEVLAGKGEDWRKIDEKLEA 370 + +L KV +E K ++PK R+ + +P ++VLA + E +K EK E Sbjct: 356 DHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEK-KKAKEK-EK 413 Query: 369 LKVREAPPEVKSSGRRGSP 313 +V++ + K+ G+R P Sbjct: 414 PRVKKRHRDTKNIGKRRKP 432 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,595,264 Number of Sequences: 219361 Number of extensions: 1477933 Number of successful extensions: 5258 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5246 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
