ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8) 30 3.3
2FZD8_MOUSE (Q61091) Frizzled 8 precursor (Frizzled-8) (Fz-8) (mFz8) 29 5.7
3RGMC_RAT (Q8N7M5) Hemojuvelin precursor (Hemochromatosis type 2 ... 28 9.7
4CASR_HUMAN (P41180) Extracellular calcium-sensing receptor precu... 28 9.7
5POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48) 28 9.7
6EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-... 28 9.7

>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 394 PGKQPPXDETHGSHPGDGTPPHK 326
           PG+QPP    HG  PG   PPH+
Sbjct: 172 PGEQPPSGSGHGRPPG-ARPPHR 193



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>FZD8_MOUSE (Q61091) Frizzled 8 precursor (Frizzled-8) (Fz-8) (mFz8)|
          Length = 685

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 412 LPTXHRPGKQPPXDETHGSHPGDGTPPHK 326
           LP    PG+QPP    H   PG   PPH+
Sbjct: 167 LPPPPPPGEQPPSGSGHSRPPG-ARPPHR 194



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>RGMC_RAT (Q8N7M5) Hemojuvelin precursor (Hemochromatosis type 2 protein|
           homolog) (RGM domain family member C)
          Length = 422

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +1

Query: 244 GPPSSPSKCLIRIFT--FVLFF 303
           GPP SP+ CL+R+ +  FVL+F
Sbjct: 398 GPPLSPATCLVRLLSVLFVLWF 419



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>CASR_HUMAN (P41180) Extracellular calcium-sensing receptor precursor (CaSR)|
           (Parathyroid Cell calcium-sensing receptor)
          Length = 1078

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -3

Query: 194 TF*AAGCC*VWLLQTPPSMYRE*RISAT*LPEDLRQMSQALLYTCERNAVKLLCFIFILY 15
           TF     C +WL   PPS YR   +             + +  TC   ++  L F+ I Y
Sbjct: 732 TFMQIVICVIWLYTAPPSSYRNQELE-----------DEIIFITCHEGSLMALGFL-IGY 779

Query: 14  RCLM 3
            CL+
Sbjct: 780 TCLL 783



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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 231 SPFQRERGTQTFHILSSR--VLLSLAPSNPSFHVQRVTH*CYLTTGRPETDVPSPP 70
           SPF      +TFH+ S    + LSL P +PS  +        +    P  + PSPP
Sbjct: 513 SPFNLSWSLETFHVQSPSPFLPLSLTPPSPSEEIALPPPIFRVPPPLPAQETPSPP 568



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>EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-EXP24) (AtEx24)|
           (Ath-ExpAlpha-1.19)
          Length = 312

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 400 HRPGKQPPXDETHGSHPGDGTPP 332
           H PG +P    +HG+HP  G  P
Sbjct: 33  HVPGGRPGAHPSHGAHPAHGAHP 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,839,245
Number of Sequences: 219361
Number of extensions: 1330891
Number of successful extensions: 3229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3227
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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