ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1g08 |
|---|---|
| Clone Library Name | barley_pub |
>SIF2_SCHPO (O74446) Sad1-interacting factor 2| Length = 446 Score = 37.0 bits (84), Expect = 0.050 Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Frame = -1 Query: 640 IILKDLSIDGIR-TIGSVLGQSIALDYYIRQVDGMVAEFTDINRGMEKTGTFTMERKKLF 464 I L+D S IR +I + QS+ + + V+ + D + + +TG ++R+++ Sbjct: 218 IALRDASNYMIRLSISHAIAQSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIM 277 Query: 463 QLVGKANSNLADVILKLGLFERSDIAWKNANYAQIWEFLRDEYELTQRFGNLDFKLKFVE 284 VG+ ++ L+ + + ++ W I+ R E+ QR L+ +++ + Sbjct: 278 MAVGQLFILRININLQGSVLDSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIG 337 Query: 283 HNIRFLQE 260 + L+E Sbjct: 338 DLLSMLKE 345
>RPOA_CAMJR (Q5HSJ6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 31.2 bits (69), Expect = 2.7 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = -1 Query: 550 VDGMVAEFTDINRGMEKTGTFTMERKKL-FQLVGKANSNLADVILKLGLFERSDIAWKNA 374 +DG+ EF + +E F + KKL F++ G++N + + K +I K+ Sbjct: 61 IDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVEFSFK----GSKEIYGKDL 116 Query: 373 NYAQIWEFLRDEYELTQRFGNLDFKLKF 290 N Q+ +D Y T N D +LKF Sbjct: 117 NNDQVEVVNKDAYLATI---NEDAELKF 141
>DYR_HAEIN (P43791) Dihydrofolate reductase (EC 1.5.1.3)| Length = 160 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/81 (24%), Positives = 38/81 (46%) Frame = -1 Query: 499 TGTFTMERKKLFQLVGKANSNLADVILKLGLFERSDIAWKNANYAQIWEFLRDEYELTQR 320 TG + +K F+ +G+ +++L LFE + WK+ ++ F+RD E+ Sbjct: 37 TGKPVIMGRKTFESIGRPLPKRTNIVLSRQLFEHEGVIWKD-SFESAVNFVRDFDEIMLI 95 Query: 319 FGNLDFKLKFVEHNIRFLQEI 257 G FK + + +L +I Sbjct: 96 GGGELFKQYLPKADKLYLTQI 116
>GIDA_LEGPL (Q5WSS4) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 624 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -3 Query: 374 KLCSDLGVPPGRIRANPKIRKPRFQVEIR*AQHPVPPGDPPEQEVGFPGVADHHPDQ 204 K DL +P GR++ R R ++ +Q PGD P + G A HP Q Sbjct: 185 KSLRDLDLPVGRLKTGTPPRIDRRTIDF--SQMVEQPGDTPVPVFSYLGTASDHPQQ 239
>GIDA_LEGPH (Q5ZRJ2) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 624 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -3 Query: 374 KLCSDLGVPPGRIRANPKIRKPRFQVEIR*AQHPVPPGDPPEQEVGFPGVADHHPDQ 204 K DL +P GR++ R R ++ +Q PGD P + G A HP Q Sbjct: 185 KSLRDLDLPVGRLKTGTPPRIDRRTIDF--SQMVEQPGDTPVPVFSYLGAASDHPQQ 239
>GIDA_LEGPA (Q5X0Z8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 624 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -3 Query: 374 KLCSDLGVPPGRIRANPKIRKPRFQVEIR*AQHPVPPGDPPEQEVGFPGVADHHPDQ 204 K DL +P GR++ R R ++ +Q PGD P + G A HP Q Sbjct: 185 KSLRDLDLPVGRLKTGTPPRIDRRTIDF--SQMVEQPGDTPVPVFSYLGTASDHPQQ 239
>RPOA_CAMJE (Q9PM80) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 30.4 bits (67), Expect = 4.6 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -1 Query: 550 VDGMVAEFTDINRGMEKTGTFTMERKKL-FQLVGKANSNLADVILKLGLFERSDIAWKNA 374 +DG+ EF + +E F + KKL F++ G +N + + K +I K+ Sbjct: 61 IDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGDSNKEIVEFSFK----GSKEIYGKDL 116 Query: 373 NYAQIWEFLRDEYELTQRFGNLDFKLKF 290 N Q+ +D Y T N D +LKF Sbjct: 117 NNDQVEVVNKDAYLATI---NEDAELKF 141
>FABH_HAEIN (P43711) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 316 Score = 30.0 bits (66), Expect = 6.1 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -1 Query: 514 RGMEKTGTFTMERKKLFQLVGKANSNLADVILKLGLFERSDIAW 383 RG+EK+G M+ + F+L + SN+ + L ++ D+ W Sbjct: 196 RGIEKSGYIEMQGNETFKLAVRELSNVVEETLLANNLDKKDLDW 239
>CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21| Length = 344 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -2 Query: 177 TLSRSRCRAIARYPTRLLVRASERDRDHR 91 +LSRSR R+ +R P R R RDRD+R Sbjct: 315 SLSRSRSRSYSRSPDRDRYREKYRDRDNR 343
>GAW2_HUMAN (Q9NRZ4) HERV-W_3q26.32 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein (Gag P15); Capsid protein (Core shell protein) (Gag P30)] Length = 362 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 430 DVILKLGLFERSDIAWKNANYAQIWEFLRDEYELTQRFG 314 ++IL+L LF R + W Y Q + LRD +L ++ G Sbjct: 59 NIILQLDLFCRKEGKWSEVPYVQTFFSLRDNSQLCKKCG 97
>AEPE_BPA50 (Q37979) L-alanyl-D-glutamate peptidase (EC 3.4.-.-)| Length = 289 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%) Frame = -3 Query: 623 KYRWYSDNWKCTWSEYRS*LL---YPASGW 543 K +WY+ N K W YR L YP GW Sbjct: 251 KIKWYAPNVKLAWYNYRRGYLELWYPNDGW 280
>SSAA_STAES (Q7CCJ3) Staphylococcal secretory antigen ssaA precursor| Length = 257 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -3 Query: 611 YSDNWKCTWSEYRS*LLYPASGWNGCRVHGYKSWNGENWYLHYGEEKTF 465 Y WK WS R Y + +N +GY +++ N Y +Y + Sbjct: 54 YHYTWKGNWSPDRVNTSYNYNNYNNYNYYGYNNYSNYNNYSNYNNYNNY 102
>SSAA_STAEQ (Q5HLV2) Staphylococcal secretory antigen ssaA precursor| Length = 257 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -3 Query: 611 YSDNWKCTWSEYRS*LLYPASGWNGCRVHGYKSWNGENWYLHYGEEKTF 465 Y WK WS R Y + +N +GY +++ N Y +Y + Sbjct: 54 YHYTWKGNWSPDRVNTSYNYNNYNNYNYYGYNNYSNYNNYSNYNNYNNY 102
>SSAA_STAEP (Q9KJT6) Staphylococcal secretory antigen ssaA precursor| Length = 257 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -3 Query: 611 YSDNWKCTWSEYRS*LLYPASGWNGCRVHGYKSWNGENWYLHYGEEKTF 465 Y WK WS R Y + +N +GY +++ N Y +Y + Sbjct: 54 YHYTWKGNWSPDRVNTSYNYNNYNNYNYYGYNNYSNYNNYSNYNNYNNY 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,548,167 Number of Sequences: 219361 Number of extensions: 1921968 Number of successful extensions: 5867 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5867 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
