ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMS_BUCBP (P59499) Glucosamine--fructose-6-phosphate aminotrans... 28 4.3
2PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allel... 28 7.4
3GSPC1_ERWCH (P31698) General secretion pathway protein C (Pectic... 27 9.7

>GLMS_BUCBP (P59499) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 609

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 312 NVQRQMETNGHTEHYFKGVIY*SPNA-KNFI 223
           N+Q    T GH +HY K  IY  P A KN I
Sbjct: 239 NIQNDSITKGHYQHYMKKEIYEQPYAIKNAI 269



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>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 210 ESXFLVENKPRFIIPQGGNKSESENHPSQTFQG 112
           ES FL+  KP    PQGGN+ +    P    QG
Sbjct: 27  ESLFLISGKPEGRRPQGGNQPQRPPPPPGKPQG 59



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>GSPC1_ERWCH (P31698) General secretion pathway protein C (Pectic enzymes|
           secretion protein outC)
          Length = 272

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 284 ATLNITLRGLFIKVRMLKTLXPILR-NPXF*WKINPDLLYPKAATSQNPKIIHXRPSKVV 108
           +TLN++L G+ +     +++  I + N  F   +N ++         N KI+  RP KVV
Sbjct: 91  STLNLSLTGVMVGDDTARSIAIISKDNEQFSRGVNEEV------PGYNAKIVSIRPDKVV 144

Query: 107 YKSMGEVAIL 78
            +  G   +L
Sbjct: 145 LQYQGRYEVL 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,116,282
Number of Sequences: 219361
Number of extensions: 820453
Number of successful extensions: 1380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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