ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNAE2_BORPA (Q7W9W1) Error-prone DNA polymerase (EC 2.7.7.7) 32 1.6
2DNAE2_BORBR (Q7WHW8) Error-prone DNA polymerase (EC 2.7.7.7) 32 1.6
3THNB_PHOLI (P59358) Ligatoxin B 32 1.6
4HUNB_DROTA (O46260) Protein hunchback (Fragments) 31 2.7
5PROS_DROVI (Q9U6A1) Protein prospero 30 4.6
6THN_PHOTO (P01539) Phoratoxin 30 7.8

>DNAE2_BORPA (Q7W9W1) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1052

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
 Frame = -1

Query: 600 EVEHNRKKHTVCEALEWFSQRISEERALPSIQHPLYLPKDIFVLLPKVLRLHQRLVDPIL 421
           + EH R++    E +++  ++   +RA  +     Y P+ +     + L +   ++D + 
Sbjct: 395 DFEHQRRE----EVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVA 450

Query: 420 SARQLW----------SACQIDPAARM 370
            A Q W          +AC +DPA+R+
Sbjct: 451 RAHQWWDGKKEMLRSLAACGLDPASRV 477



to top

>DNAE2_BORBR (Q7WHW8) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1052

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
 Frame = -1

Query: 600 EVEHNRKKHTVCEALEWFSQRISEERALPSIQHPLYLPKDIFVLLPKVLRLHQRLVDPIL 421
           + EH R++    E +++  ++   +RA  +     Y P+ +     + L +   ++D + 
Sbjct: 395 DFEHQRRE----EVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVA 450

Query: 420 SARQLW----------SACQIDPAARM 370
            A Q W          +AC +DPA+R+
Sbjct: 451 RAHQWWDGKKEMLRSLAACGLDPASRV 477



to top

>THNB_PHOLI (P59358) Ligatoxin B|
          Length = 46

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 429 PILSARQLWSACQIDPAAR-MCAPCRGCKEVVEQMEAHGWSH 307
           P  +AR +++ C++  A+R +CA   GCK +       GW+H
Sbjct: 5   PSTTARNIYNTCRLTGASRSVCASLSGCKIISGSTCDSGWNH 46



to top

>HUNB_DROTA (O46260) Protein hunchback (Fragments)|
          Length = 192

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 137 HFHVSHRSFHIQRNSN--SPHALPLNVKVQTINPT*QLGEKIAHQETQK 277
           H H +H S H   NSN  SPH  PL       N   QL + +  Q+ Q+
Sbjct: 20  HHHHAHHSHHADSNSNASSPHQSPLPSPNPPSNTNLQLEQYLKQQQQQQ 68



to top

>PROS_DROVI (Q9U6A1) Protein prospero|
          Length = 1556

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +1

Query: 142  SCESQELPHPAQFKQPACSPA--QC*SPNHQSNLAARGEDCPPRDTEARDDAQTLVFMAP 315
            S +S  LPHP     PA   A     SP++++ L A   D   R +E      T   M P
Sbjct: 1265 SRDSPPLPHPPTMLHPALLAAAHHGGSPDYKTCLRAV-MDAQDRQSECNSADMTFDGMQP 1323

Query: 316  TMSLHLLHNFLTSTAWGTHSSSWVNLAS 399
            T+S         S   G HS   VNL S
Sbjct: 1324 TISFLKQQQQQQSQLSGAHSVPMVNLWS 1351



to top

>THN_PHOTO (P01539) Phoratoxin|
          Length = 46

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 429 PILSARQLWSACQIDPAAR-MCAPCRGCKEVVEQMEAHGWSH 307
           P  +AR +++ C+    +R +CA   GCK +       GW+H
Sbjct: 5   PTTTARNIYNTCRFGGGSRPVCAKLSGCKIISGTKCDSGWNH 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,195,538
Number of Sequences: 219361
Number of extensions: 2030001
Number of successful extensions: 6251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6249
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top