Clone Name | rbasd1f20 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 210 bits (106), Expect = 4e-51 Identities = 324/396 (81%), Gaps = 3/396 (0%) Strand = Plus / Plus Query: 237 agcagctcggggagaagattgcccaccaagagacacagaagctagagatgatgcccagac 296 ||||||||||||||||||| || | || | |||| |||||| |||||||||||||| || Sbjct: 21700535 agcagctcggggagaagatcgctcgccgaacgacatagaagcgagagatgatgcccacac 21700594 Query: 297 tctcgtgtttatggctccaaccatgagcctccatttgctccacaacttccttacatccac 356 || |||| || |||||| |||||||||| ||||||||||| | |||||| | || || Sbjct: 21700595 cctgctgttcatagctccacccatgagcctgcatttgctccagatcttcctcaggtctac 21700654 Query: 357 ggcatggggcacacattcgagcagctgggtcaatttggcaagcactccaaagttggcgtg 416 ||||| ||||| ||||||||||||||||||| ||||||||| | |||| |||||| || Sbjct: 21700655 agcatgcggcacgcattcgagcagctgggtcagtttggcaaggatgccaaggttggcatg 21700714 Query: 417 ccgaaagtattgggtccacaagcctttgatgcaggcgaagaactttgggaagaagaacaa 476 ||| ||||||||| ||| | ||||||||||||| ||||||||||||||||||| | Sbjct: 21700715 ccggaagtattggacccagattcctttgatgcaggagaagaactttgggaagaaggctac 21700774 Query: 477 aaatatccttaggcaaataaagaggatgctgaatgctaggtagggctcgctcttcactga 536 | |||| | ||||||||||| |||||||||||||||||||||||||| ||||||| | Sbjct: 21700775 cagtatcttcaggcaaataaataggatgctgaatgctaggtagggctcactcttcaaagc 21700834 Query: 537 ttcgctgactgaaccattccaaagcttcgcatactgtgtgcttc---ttccggttgtgtt 593 ||| | | ||| | |||||||||||| ||| ||||||||||| ||| | || | | Sbjct: 21700835 ttcaataattgagcttttccaaagcttcacatgctgtgtgcttccagttcgagctgcgct 21700894 Query: 594 ccacttccgcggaccaagatatgcaactggttcttg 629 ||| |||| |||||||||||||||| ||||||||| Sbjct: 21700895 ccatttccttggaccaagatatgcaattggttcttg 21700930 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 79 tacacaggctcagcagtatccctaagatttacatgctacaaaca 122 |||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 21700347 tacagaggctcagcagtatccctaagatttacaggctacaaaca 21700390 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 129 tttcactacattttcatgtgagtcacaggagcttccacatccagcgcaattcaa 182 ||||||||||| |||||||||| ||||||||||| |||||||| || |||||| Sbjct: 21700425 tttcactacatgctcatgtgagttacaggagcttctacatccagtgcgattcaa 21700478
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 210 bits (106), Expect = 4e-51 Identities = 324/396 (81%), Gaps = 3/396 (0%) Strand = Plus / Plus Query: 237 agcagctcggggagaagattgcccaccaagagacacagaagctagagatgatgcccagac 296 ||||||||||||||||||| || | || | |||| |||||| |||||||||||||| || Sbjct: 21628880 agcagctcggggagaagatcgctcgccgaacgacatagaagcgagagatgatgcccacac 21628939 Query: 297 tctcgtgtttatggctccaaccatgagcctccatttgctccacaacttccttacatccac 356 || |||| || |||||| |||||||||| ||||||||||| | |||||| | || || Sbjct: 21628940 cctgctgttcatagctccacccatgagcctgcatttgctccagatcttcctcaggtctac 21628999 Query: 357 ggcatggggcacacattcgagcagctgggtcaatttggcaagcactccaaagttggcgtg 416 ||||| ||||| ||||||||||||||||||| ||||||||| | |||| |||||| || Sbjct: 21629000 agcatgcggcacgcattcgagcagctgggtcagtttggcaaggatgccaaggttggcatg 21629059 Query: 417 ccgaaagtattgggtccacaagcctttgatgcaggcgaagaactttgggaagaagaacaa 476 ||| ||||||||| ||| | ||||||||||||| ||||||||||||||||||| | Sbjct: 21629060 ccggaagtattggacccagattcctttgatgcaggagaagaactttgggaagaaggctac 21629119 Query: 477 aaatatccttaggcaaataaagaggatgctgaatgctaggtagggctcgctcttcactga 536 | |||| | ||||||||||| |||||||||||||||||||||||||| ||||||| | Sbjct: 21629120 cagtatcttcaggcaaataaataggatgctgaatgctaggtagggctcactcttcaaagc 21629179 Query: 537 ttcgctgactgaaccattccaaagcttcgcatactgtgtgcttc---ttccggttgtgtt 593 ||| | | ||| | |||||||||||| ||| ||||||||||| ||| | || | | Sbjct: 21629180 ttcaataattgagcttttccaaagcttcacatgctgtgtgcttccagttcgagctgcgct 21629239 Query: 594 ccacttccgcggaccaagatatgcaactggttcttg 629 ||| |||| |||||||||||||||| ||||||||| Sbjct: 21629240 ccatttccttggaccaagatatgcaattggttcttg 21629275 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 79 tacacaggctcagcagtatccctaagatttacatgctacaaaca 122 |||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 21628692 tacagaggctcagcagtatccctaagatttacaggctacaaaca 21628735 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 129 tttcactacattttcatgtgagtcacaggagcttccacatccagcgcaattcaa 182 ||||||||||| |||||||||| ||||||||||| |||||||| || |||||| Sbjct: 21628770 tttcactacatgctcatgtgagttacaggagcttctacatccagtgcgattcaa 21628823
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 210 bits (106), Expect = 4e-51 Identities = 324/396 (81%), Gaps = 3/396 (0%) Strand = Plus / Minus Query: 237 agcagctcggggagaagattgcccaccaagagacacagaagctagagatgatgcccagac 296 ||||||||||||||||||| || | || | |||| |||||| |||||||||||||| || Sbjct: 112016 agcagctcggggagaagatcgctcgccgaacgacatagaagcgagagatgatgcccacac 111957 Query: 297 tctcgtgtttatggctccaaccatgagcctccatttgctccacaacttccttacatccac 356 || |||| || |||||| |||||||||| ||||||||||| | |||||| | || || Sbjct: 111956 cctgctgttcatagctccacccatgagcctgcatttgctccagatcttcctcaggtctac 111897 Query: 357 ggcatggggcacacattcgagcagctgggtcaatttggcaagcactccaaagttggcgtg 416 ||||| ||||| ||||||||||||||||||| ||||||||| | |||| |||||| || Sbjct: 111896 agcatgcggcacgcattcgagcagctgggtcagtttggcaaggatgccaaggttggcatg 111837 Query: 417 ccgaaagtattgggtccacaagcctttgatgcaggcgaagaactttgggaagaagaacaa 476 ||| ||||||||| ||| | ||||||||||||| ||||||||||||||||||| | Sbjct: 111836 ccggaagtattggacccagattcctttgatgcaggagaagaactttgggaagaaggctac 111777 Query: 477 aaatatccttaggcaaataaagaggatgctgaatgctaggtagggctcgctcttcactga 536 | |||| | ||||||||||| |||||||||||||||||||||||||| ||||||| | Sbjct: 111776 cagtatcttcaggcaaataaataggatgctgaatgctaggtagggctcactcttcaaagc 111717 Query: 537 ttcgctgactgaaccattccaaagcttcgcatactgtgtgcttc---ttccggttgtgtt 593 ||| | | ||| | |||||||||||| ||| ||||||||||| ||| | || | | Sbjct: 111716 ttcaataattgagcttttccaaagcttcacatgctgtgtgcttccagttcgagctgcgct 111657 Query: 594 ccacttccgcggaccaagatatgcaactggttcttg 629 ||| |||| |||||||||||||||| ||||||||| Sbjct: 111656 ccatttccttggaccaagatatgcaattggttcttg 111621 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 79 tacacaggctcagcagtatccctaagatttacatgctacaaaca 122 |||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 112204 tacagaggctcagcagtatccctaagatttacaggctacaaaca 112161 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 129 tttcactacattttcatgtgagtcacaggagcttccacatccagcgcaattcaa 182 ||||||||||| |||||||||| ||||||||||| |||||||| || |||||| Sbjct: 112126 tttcactacatgctcatgtgagttacaggagcttctacatccagtgcgattcaa 112073
>gb|AY739301.1| Zea mays adenosine 5'-phosphosulfate reductase 6 (APRL6) mRNA, complete cds Length = 1398 Score = 155 bits (78), Expect = 2e-34 Identities = 219/266 (82%) Strand = Plus / Minus Query: 256 tgcccaccaagagacacagaagctagagatgatgcccagactctcgtgtttatggctcca 315 ||||||||||| ||||| |||| ||||||||||||||| | || ||| | |||||| Sbjct: 916 tgcccaccaagtgacaccgaagttagagatgatgcccatatcctaccgttcttagctcca 857 Query: 316 accatgagcctccatttgctccacaacttccttacatccacggcatggggcacacattcg 375 |||||||||||| | |||||||||| ||| || || ||||| ||||| ||||||||||| Sbjct: 856 accatgagcctcaacttgctccacatctttctcacgtccacagcatgaggcacacattca 797 Query: 376 agcagctgggtcaatttggcaagcactccaaagttggcgtgccgaaagtattgggtccac 435 |||||||||||||||||||| || | ||||| |||| ||| | ||||||||||||| Sbjct: 796 agcagctgggtcaatttggcgaggattccaaggttgatttgctcatagtattgggtccag 737 Query: 436 aagcctttgatgcaggcgaagaactttgggaagaagaacaaaaatatccttaggcaaata 495 ||| ||| || | || |||||||||||||||||||| | |||||||| ||||||| | Sbjct: 736 aagtcttggacgagagcaaagaactttgggaagaagaagatgaatatcctcaggcaaaca 677 Query: 496 aagaggatgctgaatgctaggtaggg 521 || ||||| |||||||||||| |||| Sbjct: 676 aacaggatactgaatgctaggcaggg 651 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 93 agtatccctaagatttacatgctacaaaca 122 |||||| ||||||||||||||||||||||| Sbjct: 1156 agtatcgctaagatttacatgctacaaaca 1127
>gb|AY739302.1| Zea mays adenosine 5'-phosphosulfate reductase 7 (APRL7) mRNA, complete cds Length = 1503 Score = 81.8 bits (41), Expect = 3e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 310 gctccaaccatgagcctccatttgctccacaacttccttacatccacggcatggggcaca 369 |||||||||| ||||||| | |||||||||| |||||| ||||||||||| || ||||| Sbjct: 882 gctccaaccacgagcctcaacttgctccacaccttcctcacatccacggcgtgaggcacg 823 Query: 370 cattcgagcagctgggtcaat 390 ||||| |||||||||| |||| Sbjct: 822 cattcaagcagctgggccaat 802 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 429 ggtccacaagcctttgatgcaggcgaagaactttgggaagaagaacaaaaatatccttag 488 |||||||||| ||| |||| ||| || |||||||||||||||| || || | ||| | Sbjct: 763 ggtccacaagtcttggatgagggcaaatgactttgggaagaagaaaaagaacaccctcat 704 Query: 489 gcaaataaagaggatgctgaatgctaggtagggctcgctcttcactg 535 ||||||||| |||||||| ||||| |||||||| || | |||||||| Sbjct: 703 gcaaataaacaggatgctcaatgcaaggtagggttctcgcttcactg 657
>dbj|AK058334.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C12, full insert sequence Length = 569 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 79 tacacaggctcagcagtatccctaagatttacatgctacaaaca 122 |||| |||||||||||||||||||||||||||| |||||||||| Sbjct: 205 tacagaggctcagcagtatccctaagatttacaggctacaaaca 162 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 129 tttcactacattttcatgtgagtcacaggagcttccacatccagcgcaattcaa 182 ||||||||||| |||||||||| ||||||||||| |||||||| || |||||| Sbjct: 127 tttcactacatgctcatgtgagttacaggagcttctacatccagtgcgattcaa 74
>gb|AC123948.4| Mus musculus BAC clone RP23-105C3 from chromosome 10, complete sequence Length = 214819 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 tttgggaagaagaacaaaaat 480 ||||||||||||||||||||| Sbjct: 119619 tttgggaagaagaacaaaaat 119599
>ref|NM_106199.4| Arabidopsis thaliana CKX6 (CYTOKININ OXIDASE 6); cytokinin oxidase AT1G75450 (CKX6) mRNA, complete cds Length = 2018 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aagagacacagaagctagag 283 |||||||||||||||||||| Sbjct: 1417 aagagacacagaagctagag 1436
>ref|NM_001003082.1| Canis familiaris TIMP metallopeptidase inhibitor 2 (TIMP2), mRNA Length = 666 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 586 ttgatgcaggcgaagaactt 567
>ref|NM_001034915.1| Homo sapiens RNA binding motif protein 35A (RBM35A), transcript variant 2, mRNA Length = 3773 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 3027 ttaaagtccaaaccatcaat 3008
>gb|BC099916.1| Homo sapiens RNA binding motif protein 35A, mRNA (cDNA clone IMAGE:30527936), partial cds Length = 3773 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 3027 ttaaagtccaaaccatcaat 3008
>gb|BC052574.1| Homo sapiens RNA binding motif protein 35A, mRNA (cDNA clone IMAGE:6586439), containing frame-shift errors Length = 3486 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 2735 ttaaagtccaaaccatcaat 2716
>gb|BC035406.1| Homo sapiens RNA binding motif protein 35A, mRNA (cDNA clone IMAGE:4526804) Length = 3081 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 2337 ttaaagtccaaaccatcaat 2318
>ref|NM_011594.3| Mus musculus tissue inhibitor of metalloproteinase 2 (Timp2), mRNA Length = 3635 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 905 ttgatgcaggcgaagaactt 886
>gb|AY515151.1| Populus deltoides CONSTANS-like protein CO2 mRNA, complete cds Length = 1370 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 gaagaagaacaaaaatatccttag 488 |||||||||||||||| ||||||| Sbjct: 1239 gaagaagaacaaaaatctccttag 1262
>gb|AC139711.4| Mus musculus BAC clone RP23-362F21 from chromosome 19, complete sequence Length = 230596 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 agagacacagaagctagaga 284 |||||||||||||||||||| Sbjct: 60548 agagacacagaagctagaga 60529
>gb|BC071586.1| Homo sapiens TIMP metallopeptidase inhibitor 2, mRNA (cDNA clone MGC:87301 IMAGE:30337524), complete cds Length = 3661 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 883 ttgatgcaggcgaagaactt 864
>gb|BC052605.1| Homo sapiens TIMP metallopeptidase inhibitor 2, mRNA (cDNA clone MGC:59751 IMAGE:6267022), complete cds Length = 1083 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 863 ttgatgcaggcgaagaactt 844
>gb|BC040445.1| Homo sapiens TIMP metallopeptidase inhibitor 2, mRNA (cDNA clone IMAGE:6061436) Length = 3403 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 621 ttgatgcaggcgaagaactt 602
>gb|BC040039.1| Homo sapiens TIMP metallopeptidase inhibitor 2, mRNA (cDNA clone IMAGE:6065728) Length = 759 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 536 ttgatgcaggcgaagaactt 517
>gb|BC039613.1| Homo sapiens TIMP metallopeptidase inhibitor 2, mRNA (cDNA clone IMAGE:6055429) Length = 866 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 624 ttgatgcaggcgaagaactt 605
>emb|X62622.1|MMTIMP2 M.musculus TIMP-2 mRNA for tissue inhibitor of metalloproteinases, Type 2 Length = 1714 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 810 ttgatgcaggcgaagaactt 791
>ref|NM_003255.4| Homo sapiens TIMP metallopeptidase inhibitor 2 (TIMP2), mRNA Length = 3670 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 886 ttgatgcaggcgaagaactt 867
>emb|AL445686.14| Human DNA sequence from clone RP11-496D1 on chromosome 1 Contains the gene for a novel protein (FLJ42528), a ribosomal protein L26 (RPL26) pseudogene, the 5' end of the SRRM1 gene for serine/arginine repetitive matrix 1 and a CpG island, complete sequence Length = 107868 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 475 aaaaatatccttaggcaaataaag 498 |||||||| ||||||||||||||| Sbjct: 18390 aaaaatattcttaggcaaataaag 18413
>gb|AC084253.6| Homo sapiens chromosome 8, clone RP11-498C11, complete sequence Length = 91692 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 23394 ttaaagtccaaaccatcaat 23375
>gb|AC104127.2| Homo sapiens chromosome 5 clone RP11-69G16, complete sequence Length = 161764 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccctaagatttacatgctac 117 |||||||||||||||||||| Sbjct: 52151 ccctaagatttacatgctac 52132
>emb|CR614895.1| full-length cDNA clone CS0DI009YD20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2807 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 2119 ttaaagtccaaaccatcaat 2100
>dbj|AK001805.1| Homo sapiens cDNA FLJ10943 fis, clone OVARC1001360 Length = 1624 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 1101 ttaaagtccaaaccatcaat 1082
>dbj|AK144236.1| Mus musculus RCB-0545 OHTA cDNA, RIKEN full-length enriched library, clone:G430140D19 product:tissue inhibitor of metalloproteinase 2, full insert sequence Length = 1006 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 819 ttgatgcaggcgaagaactt 800
>gb|AC061963.13| Mus musculus chromosome 9, clone RP23-23P9, complete sequence Length = 201757 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 caccaagagacacagaagct 279 |||||||||||||||||||| Sbjct: 177494 caccaagagacacagaagct 177475
>gb|S48568.1| Homo sapiens tissue inhibitor of metalloproteinase 2 mRNA, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 854 ttgatgcaggcgaagaactt 835
>dbj|AK032818.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720457K10 product:tissue inhibitor of metalloproteinase 2, full insert sequence Length = 3532 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 819 ttgatgcaggcgaagaactt 800
>dbj|AK081522.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130030K05 product:tissue inhibitor of metalloproteinase 2, full insert sequence Length = 3714 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 1002 ttgatgcaggcgaagaactt 983
>gb|AF112115.1|AF112115 Canis familiaris tissue inhibitor of metalloproteinase 2 precursor, mRNA, complete cds Length = 666 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 586 ttgatgcaggcgaagaactt 567
>gb|BC102710.1| Bos taurus tissue inhibitor of mettaloproteinase 2, mRNA (cDNA clone MGC:127732 IMAGE:7961892), complete cds Length = 1154 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 887 ttgatgcaggcgaagaactt 868
>gb|AF366398.1|AF366398 Macaca mulatta tissue inhibitor of matrix metalloproteinase-2 (TIMP-2) mRNA, partial cds Length = 422 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 215 ttgatgcaggcgaagaactt 196
>emb|BX816442.1|CNS0AD9I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZF03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1838 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aagagacacagaagctagag 283 |||||||||||||||||||| Sbjct: 1417 aagagacacagaagctagag 1436
>gb|BC049126.1| Mus musculus tissue inhibitor of metalloproteinase 2, mRNA (cDNA clone MGC:61198 IMAGE:6821553), complete cds Length = 3624 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 802 ttgatgcaggcgaagaactt 783
>gb|AF144764.1|AF144764 Bos taurus TIMP-2 protein mRNA, partial cds Length = 595 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 523 ttgatgcaggcgaagaactt 504
>gb|AF303982.1|AF303982 Arabidopsis thaliana cytokinin oxidase (CKX6) mRNA, complete cds Length = 1623 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aagagacacagaagctagag 283 |||||||||||||||||||| Sbjct: 1349 aagagacacagaagctagag 1368
>gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence Length = 100685 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aagagacacagaagctagag 283 |||||||||||||||||||| Sbjct: 46286 aagagacacagaagctagag 46305
>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence Length = 184139 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 162618 ttgatgcaggcgaagaactt 162637
>dbj|AK192526.1| Mus musculus cDNA, clone:Y1G0109C19, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000017610, based on BLAT search Length = 424 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 276 ttgatgcaggcgaagaactt 257
>dbj|AK176378.1| Arabidopsis thaliana mRNA for cytokinin oxidase (CKX6), complete cds, clone: RAFL24-08-K03 Length = 2722 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 aagagacacagaagctagag 283 |||||||||||||||||||| Sbjct: 1647 aagagacacagaagctagag 1666
>emb|BX647570.1|HSM807716 Homo sapiens mRNA; cDNA DKFZp313K1811 (from clone DKFZp313K1811) Length = 3777 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 3015 ttaaagtccaaaccatcaat 2996
>emb|BX641160.1|HSM807186 Homo sapiens mRNA; cDNA DKFZp686M05238 (from clone DKFZp686M05238) Length = 1835 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 1077 ttaaagtccaaaccatcaat 1058
>gb|AF188489.1|AF188489 Canis familiaris tissue inhibitor of matrix metalloproteinase-2 (TIMP2) mRNA, partial cds Length = 564 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 381 ttgatgcaggcgaagaactt 362
>dbj|AB099088.1| Bos taurus mRNA for similar to metalloproteinase inhibitor, partial cds, clone: ORCS13842 Length = 504 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 320 ttgatgcaggcgaagaactt 301
>dbj|AB098838.1| Bos taurus mRNA for similar to metalloproteinase inhibitor, partial cds, clone: ORCS13842 Length = 519 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 185 ttgatgcaggcgaagaactt 204
>dbj|AP003388.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-768C19, complete sequence Length = 46441 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 agaagaacaaaaatatcctt 486 |||||||||||||||||||| Sbjct: 27459 agaagaacaaaaatatcctt 27478
>dbj|AP005660.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1090H4, complete sequence Length = 161970 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttaaagtccaaaccatcaat 229 |||||||||||||||||||| Sbjct: 89572 ttaaagtccaaaccatcaat 89553
>gb|U44385.1|HUMANTIMP5 Human tissue inhibitor of metalloproteinases-2 (TIMP-2) gene, exon 5 and complete cds Length = 1367 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 664 ttgatgcaggcgaagaactt 645
>gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, complete sequence Length = 209924 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gtgagtcacaggagcttcca 165 |||||||||||||||||||| Sbjct: 162678 gtgagtcacaggagcttcca 162659
>ref|NM_174472.3| Bos taurus tissue inhibitor of mettaloproteinase 2 (TIMP2), mRNA Length = 1154 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 887 ttgatgcaggcgaagaactt 868
>emb|AL591404.4| Mouse DNA sequence from clone RP23-394O9 on chromosome 11, complete sequence Length = 203613 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 91185 ttgatgcaggcgaagaactt 91204
>emb|AL672267.10| Mouse DNA sequence from clone RP23-377K9 on chromosome X, complete sequence Length = 169331 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aggctcagcagtatccctaa 103 |||||||||||||||||||| Sbjct: 31162 aggctcagcagtatccctaa 31181
>gb|J05593.1|HUMTIMP2 Human metalloproteinase-2 inhibitor (TIMP-2) mRNA, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 854 ttgatgcaggcgaagaactt 835
>gb|M32304.1|HUMMET Human metalloproteinase inhibitor mRNA, complete cds Length = 1035 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 838 ttgatgcaggcgaagaactt 819
>gb|AC166048.3| Mus musculus BAC clone RP24-266C15 from chromosome 9, complete sequence Length = 144816 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 caccaagagacacagaagct 279 |||||||||||||||||||| Sbjct: 38226 caccaagagacacagaagct 38245
>emb|X54533.1|HSTIMP2M H.sapiens mRNA for tissue inhibitor of metalloproteinases, Type-2 Length = 555 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 497 ttgatgcaggcgaagaactt 478
>emb|AL713764.1|HSM803022 Homo sapiens mRNA; cDNA DKFZp761A0617 (from clone DKFZp761A0617) Length = 2455 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 2227 ttgatgcaggcgaagaactt 2208
>gb|M82858.1|MUSTIMP2A Mouse tissue inhibitor (type 2) of metalloproteinases (TIMP-2) mRNA, complete cds Length = 1695 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 800 ttgatgcaggcgaagaactt 781
>gb|M32303.1|BOVMET Bovine metalloproteinase inhibitor mRNA, complete cds Length = 1047 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatgcaggcgaagaactt 461 |||||||||||||||||||| Sbjct: 874 ttgatgcaggcgaagaactt 855 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,267,845 Number of Sequences: 3902068 Number of extensions: 5267845 Number of successful extensions: 95841 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95698 Number of HSP's gapped (non-prelim): 139 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)