ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
2dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
3dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
4dbj|AK099729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
5dbj|AK099940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
6dbj|AK099512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
7dbj|AK066664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
8dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
9dbj|AK059995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
10gb|AY596530.1| Saccharum officinarum clone SCEPLR1051A06, comple... 68 4e-08
11gb|AY107895.1| Zea mays PCO072867 mRNA sequence 60 1e-05
12gb|BT016610.1| Zea mays clone Contig443 mRNA sequence 52 0.002
13gb|AC098595.2| Homo sapiens BAC clone RP11-495L18 from 4, comple... 46 0.15
14gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome... 42 2.3
15gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, co... 42 2.3
16ref|XM_949580.1| Theileria annulata strain Ankara hypothetical p... 42 2.3
17emb|AL133511.9| Human DNA sequence from clone RP1-4K15 on chromo... 42 2.3
18gb|AC010433.9| Homo sapiens chromosome 5 clone CTD-2202L20, comp... 42 2.3
19dbj|AP005434.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.3
20dbj|AP002778.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.3
21dbj|AP000617.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 42 2.3
22gb|AC104743.28| Mus musculus chromosome 6, clone RP23-27D8, comp... 40 9.2
23gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosom... 40 9.2
24gb|AC113514.9| Mus musculus chromosome 19, clone RP23-475D11, co... 40 9.2
25gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 40 9.2
26gb|AC161514.4| Mus musculus chromosome 7, clone RP23-378L12, com... 40 9.2
27gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 40 9.2
28gb|AY132552.1| Aphodius conspurcatus isolate CHILcons cytochrome... 40 9.2
29gb|AC157809.4| Mus musculus chromosome 1, clone RP24-375B12, com... 40 9.2
30emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 9.2
31emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, ... 40 9.2
32emb|AL807378.5| Zebrafish DNA sequence from clone CH211-215A18 i... 40 9.2
33gb|AC159890.2| Mus musculus BAC clone RP24-80J11 from chromosome... 40 9.2
34dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308 40 9.2
35emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in... 40 9.2
36gb|AC159132.2| Pan troglodytes BAC clone CH251-542P7 from chromo... 40 9.2
37emb|BX530037.7| Zebrafish DNA sequence from clone DKEY-181M19 in... 40 9.2
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
39gb|AC117695.15| Mus musculus chromosome 1, clone RP23-450I19, co... 40 9.2
40dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
41dbj|AK108037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
42emb|BX855618.7| Zebrafish DNA sequence from clone CH211-69H5 in ... 40 9.2
43gb|AC153642.7| Mus musculus 6 BAC RP23-334E23 (Roswell Park Canc... 40 9.2
44emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 ... 40 9.2
45gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer... 40 9.2
46emb|AL928598.7| Mouse DNA sequence from clone RP23-326I20 on chr... 40 9.2
47emb|CT030644.8| Mouse DNA sequence from clone RP24-82E11 on chro... 40 9.2
48gb|AC135120.4| Mus musculus BAC clone RP24-536H22 from 8, comple... 40 9.2
49gb|AF454500.1| Streptococcus thermophilus eps type X operon and ... 40 9.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                           
Query: 1       tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
               ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 5046986 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 5047043

                
Query: 61      c 61
               |
Sbjct: 5047044 c 5047044
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>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1147_D11
          Length = 138444

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 6024 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 6081

             
Query: 61   c 61
            |
Sbjct: 6082 c 6082
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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1172G12
          Length = 171974

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
             ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 89100 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 89157

              
Query: 61    c 61
             |
Sbjct: 89158 c 89158
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>dbj|AK099729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089L07, full
            insert sequence
          Length = 2519

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2484 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 2427

             
Query: 61   c 61
            |
Sbjct: 2426 c 2426
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>dbj|AK099940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120N16, full
            insert sequence
          Length = 2140

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2103 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 2046

             
Query: 61   c 61
            |
Sbjct: 2045 c 2045
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>dbj|AK099512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I07, full
            insert sequence
          Length = 3180

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 3144 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 3087

             
Query: 61   c 61
            |
Sbjct: 3086 c 3086
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>dbj|AK066664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072I01, full
            insert sequence
          Length = 2402

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2365 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 2308

             
Query: 61   c 61
            |
Sbjct: 2307 c 2307
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>dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H08, full
            insert sequence
          Length = 2769

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 2733 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 2676

             
Query: 61   c 61
            |
Sbjct: 2675 c 2675
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>dbj|AK059995.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F01, full
            insert sequence
          Length = 1094

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/61 (91%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| |||||||||||||||
Sbjct: 1057 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacaacta 1000

             
Query: 61   c 61
            |
Sbjct: 999  c 999
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>gb|AY596530.1| Saccharum officinarum clone SCEPLR1051A06, complete sequence
          Length = 2542

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            ||||||||||||||||||  ||||||||||||||| || ||||| ||||||||||| |||
Sbjct: 2066 tttacactgtattctgtt--gtcaggctattctcctgctgcctcttttaatatacagcta 2009

             
Query: 61   c 61
            |
Sbjct: 2008 c 2008
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>gb|AY107895.1| Zea mays PCO072867 mRNA sequence
          Length = 788

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/61 (88%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
           |||||||||||| |||||  ||||||||||||||| || ||||| ||||||||||| |||
Sbjct: 737 tttacactgtatcctgtt--gtcaggctattctcctgctgcctcttttaatatacagcta 680

            
Query: 61  c 61
           |
Sbjct: 679 c 679
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>gb|BT016610.1| Zea mays clone Contig443 mRNA sequence
          Length = 1399

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/61 (86%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttacactgtattctgttttgtcaggctattctccagcggcctcctttaatatacaacta 60
            |||||||||||| |||||  ||||||||||||||| || ||||  ||||||||||| |||
Sbjct: 1327 tttacactgtatcctgtt--gtcaggctattctcctgctgccttttttaatatacagcta 1270

             
Query: 61   c 61
            |
Sbjct: 1269 c 1269
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>gb|AC098595.2| Homo sapiens BAC clone RP11-495L18 from 4, complete sequence
          Length = 160151

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 313    aatatttagagcagaccaaatgt 335
              |||||||||||||||||||||||
Sbjct: 149417 aatatttagagcagaccaaatgt 149439
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>gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome 17, complete sequence
          Length = 243701

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 170    tctgtgaggtagctataaata 190
              |||||||||||||||||||||
Sbjct: 238681 tctgtgaggtagctataaata 238661
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>gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, complete sequence
          Length = 227026

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 170    tctgtgaggtagctataaata 190
              |||||||||||||||||||||
Sbjct: 168027 tctgtgaggtagctataaata 168047
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>ref|XM_949580.1| Theileria annulata strain Ankara hypothetical protein (TA19750)
           partial mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 183 tataaataataaatttatgccagag 207
           |||||||||||||| ||||||||||
Sbjct: 474 tataaataataaatatatgccagag 498
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>emb|AL133511.9| Human DNA sequence from clone RP1-4K15 on chromosome 6 Contains STSs
             and GSSs, complete sequence
          Length = 51589

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 491   tatcagccagagacagcaaca 511
             |||||||||||||||||||||
Sbjct: 47195 tatcagccagagacagcaaca 47175
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>gb|AC010433.9| Homo sapiens chromosome 5 clone CTD-2202L20, complete sequence
          Length = 258929

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 300    gaattatttgagtaatattta 320
              |||||||||||||||||||||
Sbjct: 196185 gaattatttgagtaatattta 196205
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>dbj|AP005434.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-721O19, complete
            sequence
          Length = 163308

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 636  cctttcttggctcagatataa 656
            |||||||||||||||||||||
Sbjct: 6181 cctttcttggctcagatataa 6161
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>dbj|AP002778.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C11, complete
              sequence
          Length = 160242

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 636    cctttcttggctcagatataa 656
              |||||||||||||||||||||
Sbjct: 115227 cctttcttggctcagatataa 115207
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>dbj|AP000617.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-26H5, complete
           sequences
          Length = 100785

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 636 cctttcttggctcagatataa 656
           |||||||||||||||||||||
Sbjct: 873 cctttcttggctcagatataa 853
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>gb|AC104743.28| Mus musculus chromosome 6, clone RP23-27D8, complete sequence
          Length = 218391

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    atataaaaagtaatccaata 289
              ||||||||||||||||||||
Sbjct: 184236 atataaaaagtaatccaata 184217
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>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence
          Length = 186452

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    atttagcaacttccatgatt 168
              ||||||||||||||||||||
Sbjct: 173490 atttagcaacttccatgatt 173471
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>gb|AC113514.9| Mus musculus chromosome 19, clone RP23-475D11, complete sequence
          Length = 170366

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 637   ctttcttggctcagatataa 656
             ||||||||||||||||||||
Sbjct: 95859 ctttcttggctcagatataa 95840
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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   gaagtttccaaatttacacc 555
             ||||||||||||||||||||
Sbjct: 61988 gaagtttccaaatttacacc 61969
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>gb|AC161514.4| Mus musculus chromosome 7, clone RP23-378L12, complete sequence
          Length = 190426

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    ataaataataaatttatgcc 203
              ||||||||||||||||||||
Sbjct: 169828 ataaataataaatttatgcc 169809
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>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acttccatgattttctgtga 176
              ||||||||||||||||||||
Sbjct: 248385 acttccatgattttctgtga 248366
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>gb|AY132552.1| Aphodius conspurcatus isolate CHILcons cytochrome oxidase subunit I
           (COI) gene, partial cds; mitochondrial
          Length = 795

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 tagctataaataataaattt 198
           ||||||||||||||||||||
Sbjct: 465 tagctataaataataaattt 484
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>gb|AC157809.4| Mus musculus chromosome 1, clone RP24-375B12, complete sequence
          Length = 138350

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    gatggtacagttgggctcca 471
              ||||||||||||||||||||
Sbjct: 135563 gatggtacagttgggctcca 135582
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>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0
          Length = 200576

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ataaaaagtaatccaataag 291
             ||||||||||||||||||||
Sbjct: 51568 ataaaaagtaatccaataag 51549
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>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
          Length = 199667

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ataaaaagtaatccaataag 291
              ||||||||||||||||||||
Sbjct: 185783 ataaaaagtaatccaataag 185764
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>emb|AL807378.5| Zebrafish DNA sequence from clone CH211-215A18 in linkage group 7
              Contains three CpG islands, complete sequence
          Length = 198700

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    tttacatgatatacatggat 385
              ||||||||||||||||||||
Sbjct: 156233 tttacatgatatacatggat 156252
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>gb|AC159890.2| Mus musculus BAC clone RP24-80J11 from chromosome 9, complete sequence
          Length = 226770

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    aggtatctttccaaaaaagg 591
              ||||||||||||||||||||
Sbjct: 141606 aggtatctttccaaaaaagg 141587
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>dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308
          Length = 51359

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tagctataaataataaattt 198
             ||||||||||||||||||||
Sbjct: 32799 tagctataaataataaattt 32780
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>emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in linkage group 2,
            complete sequence
          Length = 195369

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 470  cagaaagtttatttttgttactat 493
            ||||| ||||||||||||||||||
Sbjct: 8072 cagaatgtttatttttgttactat 8095
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>gb|AC159132.2| Pan troglodytes BAC clone CH251-542P7 from chromosome unknown, complete
             sequence
          Length = 168297

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gctcgaattatttgagtaat 315
             ||||||||||||||||||||
Sbjct: 45518 gctcgaattatttgagtaat 45537
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>emb|BX530037.7| Zebrafish DNA sequence from clone DKEY-181M19 in linkage group 10,
             complete sequence
          Length = 105195

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 304   tatttgagtaatatttagagcaga 327
             ||||||||||||||||| ||||||
Sbjct: 10698 tatttgagtaatatttacagcaga 10675
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 369     acatgatatacatggatgaa 388
               ||||||||||||||||||||
Sbjct: 7938819 acatgatatacatggatgaa 7938838
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>gb|AC117695.15| Mus musculus chromosome 1, clone RP23-450I19, complete sequence
          Length = 188171

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    gatggtacagttgggctcca 471
              ||||||||||||||||||||
Sbjct: 108583 gatggtacagttgggctcca 108602
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>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0082C09
          Length = 160665

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   acatgatatacatggatgaa 388
             ||||||||||||||||||||
Sbjct: 62234 acatgatatacatggatgaa 62253
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>dbj|AK108037.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C10, full
            insert sequence
          Length = 1326

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  acatgatatacatggatgaa 388
            ||||||||||||||||||||
Sbjct: 1235 acatgatatacatggatgaa 1254
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>emb|BX855618.7| Zebrafish DNA sequence from clone CH211-69H5 in linkage group 4,
             complete sequence
          Length = 127818

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ctcctgcatctctttctcct 124
             ||||||||||||||||||||
Sbjct: 51130 ctcctgcatctctttctcct 51149
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>gb|AC153642.7| Mus musculus 6 BAC RP23-334E23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 227781

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    tcagctagagaagttctctt 424
              ||||||||||||||||||||
Sbjct: 174062 tcagctagagaagttctctt 174081
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>emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 in linkage group 7,
             complete sequence
          Length = 130794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   tttacatgatatacatggat 385
             ||||||||||||||||||||
Sbjct: 48460 tttacatgatatacatggat 48441
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>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 227467

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    atttagcaacttccatgatt 168
              ||||||||||||||||||||
Sbjct: 177146 atttagcaacttccatgatt 177165
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>emb|AL928598.7| Mouse DNA sequence from clone RP23-326I20 on chromosome 2, complete
             sequence
          Length = 148583

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   tcagctagagaagttctctt 424
             ||||||||||||||||||||
Sbjct: 24755 tcagctagagaagttctctt 24774
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>emb|CT030644.8| Mouse DNA sequence from clone RP24-82E11 on chromosome 9, complete
             sequence
          Length = 211707

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 572   aggtatctttccaaaaaagg 591
             ||||||||||||||||||||
Sbjct: 80703 aggtatctttccaaaaaagg 80684
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>gb|AC135120.4| Mus musculus BAC clone RP24-536H22 from 8, complete sequence
          Length = 153982

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   acttccatgattttctgtga 176
             ||||||||||||||||||||
Sbjct: 51492 acttccatgattttctgtga 51473
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>gb|AF454500.1| Streptococcus thermophilus eps type X operon and flanking sequence
          Length = 28170

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   atataaaaagtaatccaata 289
             ||||||||||||||||||||
Sbjct: 19505 atataaaaagtaatccaata 19486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,129,678
Number of Sequences: 3902068
Number of extensions: 7129678
Number of successful extensions: 163690
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163445
Number of HSP's gapped (non-prelim): 233
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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