ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1f09 |
|---|---|
| Clone Library Name | barley_pub |
>TRABD_HUMAN (Q9UGI0) TRABID protein (Zinc finger Ran-binding domain-containing| protein 1) Length = 708 Score = 33.9 bits (76), Expect = 0.42 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -2 Query: 419 WACDQCTFANPRSARSCQVCDHQQHR*ILSNIEHRDSIEPE 297 W C CT+ N A+ C VCDH + +NIE + E E Sbjct: 153 WTCSVCTYENWAKAKRCVVCDHPRP----NNIEAIELAETE 189 Score = 30.0 bits (66), Expect = 6.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 419 WACDQCTFANPRSARSCQVCDHQQ 348 WAC+ CT+ N SA C +C Q+ Sbjct: 8 WACEYCTYENWPSAIKCTMCRAQR 31
>TAMO_DROME (Q9W1A4) Protein tamozhennic| Length = 797 Score = 33.5 bits (75), Expect = 0.55 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 425 NIWACDQCTFANPRSARSCQVC 360 N W+C CTF NP + R C++C Sbjct: 740 NEWSCSFCTFLNPDTKRICEMC 761
>RYBP_BRARE (Q5EG55) RING1 and YY1-binding protein (Death effector| domain-associated factor) (DED-associated factor) Length = 257 Score = 32.7 bits (73), Expect = 0.93 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 D W C CTF N A C +CD Sbjct: 19 DNGFWDCSVCTFRNSAEAFKCSICD 43
>RYBP_MOUSE (Q8CCI5) RING1 and YY1-binding protein (Death effector| domain-associated factor) (DED-associated factor) Length = 228 Score = 32.0 bits (71), Expect = 1.6 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 D W C CTF N A C +CD Sbjct: 21 DEGFWDCSVCTFRNSAEAFKCSICD 45
>RYBP_HUMAN (Q8N488) RING1 and YY1-binding protein (Death effector| domain-associated factor) (DED-associated factor) (YY1 and E4TF1-associated factor 1) (Apoptin-associating protein 1) (APAP-1) Length = 228 Score = 32.0 bits (71), Expect = 1.6 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 D W C CTF N A C +CD Sbjct: 21 DEGFWDCSVCTFRNSAEAFKCSICD 45
>TAB2_BRARE (Q5RFW2) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 2 homolog Length = 711 Score = 32.0 bits (71), Expect = 1.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 434 DDGNIWACDQCTFANPRSARSCQVCD 357 DDG W+C CTF N + C+ C+ Sbjct: 681 DDGVQWSCTACTFLNHPALNRCEECE 706
>RNF31_HUMAN (Q96EP0) RING finger protein 31 (Zinc in-between-RING-finger| ubiquitin-associated domain protein) Length = 1072 Score = 31.6 bits (70), Expect = 2.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -2 Query: 419 WACDQCTFANPRSARSCQVCD 357 WAC CTF N +A C +C+ Sbjct: 354 WACQSCTFENEAAAVLCSICE 374
>RNF31_MOUSE (Q924T7) RING finger protein 31| Length = 1066 Score = 31.2 bits (69), Expect = 2.7 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -2 Query: 419 WACDQCTFANPRSARSCQVCD 357 WAC CTF N +A C +C+ Sbjct: 348 WACQSCTFENEAAAVLCAICE 368
>YAF2_MOUSE (Q99LW6) YY1-associated factor 2| Length = 179 Score = 30.8 bits (68), Expect = 3.5 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 D W C CTF N A C +CD Sbjct: 19 DEGYWDCSVCTFRNSAEAFKCMMCD 43
>YAF2_HUMAN (Q8IY57) YY1-associated factor 2| Length = 180 Score = 30.8 bits (68), Expect = 3.5 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 D W C CTF N A C +CD Sbjct: 19 DEGYWDCSVCTFRNSAEAFKCMMCD 43
>TAB2_HUMAN (Q9NYJ8) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 2 (TAK1-binding protein 2) Length = 693 Score = 30.8 bits (68), Expect = 3.5 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -2 Query: 434 DDGNIWACDQCTFANPRSARSCQVCDHQQH 345 D+G W C CTF N + C+ C+ +H Sbjct: 663 DEGAQWNCTACTFLNHPALIRCEQCEMPRH 692
>TAB3_HUMAN (Q8N5C8) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) (NF-kappa-B-activating protein 1) Length = 712 Score = 30.4 bits (67), Expect = 4.6 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 +G W CD CTF N + C+ C+ Sbjct: 683 EGAPWNCDSCTFLNHPALNRCEQCE 707
>TAB3_MOUSE (Q571K4) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 (TAK1-binding protein 3) Length = 716 Score = 30.4 bits (67), Expect = 4.6 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 +G W CD CTF N + C+ C+ Sbjct: 687 EGAPWNCDSCTFLNHPALNRCEQCE 711
>VG04_BPP21 (P36272) Portal protein (Head protein Gp4)| Length = 530 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 17 LQHLYNTTTGQSCIGNALLKQVQXGLGASYIQTSHD 124 LQ ++ G S + ALL+ + GLG SY Q S D Sbjct: 338 LQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRD 373
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 436 WMMATSGPVISAHLRTLDLLGAARFVTISSTGRSCQILNIGIRLNR 299 WM+ T+ PVI A LR + L RF T +++N RL + Sbjct: 225 WMILTNVPVIPAELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKK 270
>NPL4_RAT (Q9ES54) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 422 IWACDQCTFANPRSARSCQVC 360 +WAC CTF N C++C Sbjct: 582 MWACQHCTFMNQPGTGHCEMC 602
>NPL4_MOUSE (P60670) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 422 IWACDQCTFANPRSARSCQVC 360 +WAC CTF N C++C Sbjct: 582 MWACQHCTFMNQPGTGHCEMC 602
>NPL4_HUMAN (Q8TAT6) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 422 IWACDQCTFANPRSARSCQVC 360 +WAC CTF N C++C Sbjct: 582 MWACQHCTFMNQPGTGHCEMC 602
>VPS36_YEAST (Q06696) Vacuolar protein sorting protein 36| Length = 566 Score = 29.6 bits (65), Expect = 7.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 440 GMDDGNIWACDQCTFANPRSARSCQVCDHQ 351 G++ NI C CTFAN +C++C H+ Sbjct: 176 GVNSENI--CPACTFANHPQIGNCEICGHR 203
>CD37_HUMAN (P11049) Leukocyte antigen CD37 (Tetraspanin-26) (Tspan-26)| Length = 281 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Frame = +2 Query: 419 RCC--HHPYHGLSCLT-----SRHHQVPCSCYSCSYRQGSWSWS--LRPCYMHLGRYELQ 571 RCC H+P L S H+VPCSCY+ S S + P LG Sbjct: 151 RCCGWHYPQDWFQVLILRGNGSEAHRVPCSCYNLSATNDSTILDKVILPQLSRLGHLARS 210 Query: 572 HHS 580 HS Sbjct: 211 RHS 213
>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)| Length = 3053 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCDH 354 +G W C+ C+F N +A+ C C + Sbjct: 1346 EGPYWNCNSCSFKNAATAKKCVSCQN 1371
>TAB3_XENLA (Q7ZXH3) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 homolog Length = 692 Score = 29.6 bits (65), Expect = 7.9 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -2 Query: 431 DGNIWACDQCTFANPRSARSCQVCD 357 +G+ W C+ CTF N + C+ C+ Sbjct: 663 EGSPWNCNSCTFLNHPALNRCEQCE 687 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,242,267 Number of Sequences: 219361 Number of extensions: 1828053 Number of successful extensions: 4199 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4199 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
