ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA32_HUMAN (Q8TC27) ADAM 32 precursor (A disintegrin and metall... 32 0.57
2COAT_GMDNV (Q90125) Coat protein VP1 (Structural protein VP1) [C... 30 1.7
3WRK74_ARATH (Q93WU6) Probable WRKY transcription factor 74 (WRKY... 29 3.7
4AWH_DROME (Q8IRC7) LIM/homeobox protein Awh (Protein arrowhead) 28 4.9
5COAT_JCDNV (Q90053) Coat protein VP1 (Structural protein VP1) [C... 28 8.3

>ADA32_HUMAN (Q8TC27) ADAM 32 precursor (A disintegrin and metalloprotease|
           domain 32)
          Length = 787

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 98  C*QERIL-GICYARSSGCSWHQSCASQNKCHCA 3
           C + RI+    +  S  CS H  C S+NKCHC+
Sbjct: 613 CVESRIIKASAHVCSQQCSGHGVCDSRNKCHCS 645



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>COAT_GMDNV (Q90125) Coat protein VP1 (Structural protein VP1) [Contains: Coat|
           protein VP (Structural protein VP2); Coat protein VP3
           (Structural protein VP3); Coat protein VP4 (Structural
           protein VP4)]
          Length = 811

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 6   TMALILTGTALMPGTSTGPGITNAQNPFLSATG*SNFGFPSST 134
           TMA+ L GT    GTS+G G T  Q+ ++     SNFG   ST
Sbjct: 372 TMAMSLPGTG--SGTSSGGGNTQGQDVYIIPRPFSNFGKKLST 412



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>WRK74_ARATH (Q93WU6) Probable WRKY transcription factor 74 (WRKY DNA-binding|
           protein 74)
          Length = 330

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 68  YARSSGCSWHQSCASQNKCHCA 3
           ++R + CS    C S++KCHC+
Sbjct: 216 HSRRTSCSGSLKCGSKSKCHCS 237



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>AWH_DROME (Q8IRC7) LIM/homeobox protein Awh (Protein arrowhead)|
          Length = 275

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 122 KTEI*SAGC*QERILGICYARSSGCSWHQSCASQNKCHC 6
           KTE+ S     E I    +    GCSWH  C     C C
Sbjct: 2   KTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMC 40



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>COAT_JCDNV (Q90053) Coat protein VP1 (Structural protein VP1) [Contains: Coat|
           protein VP (Structural protein VP2); Coat protein VP3
           (Structural protein VP3); Coat protein VP4 (Structural
           protein VP4)]
          Length = 810

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 9   MALILTGTALMPGTSTGPGITNAQNPFLSATG*SNFGFPSST 134
           MA+ L GT    GTS+G G T+ Q  ++     SNFG   ST
Sbjct: 372 MAMSLPGTG--SGTSSGGGNTSGQEVYVIPRPFSNFGKKLST 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,979,419
Number of Sequences: 219361
Number of extensions: 541230
Number of successful extensions: 1659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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