ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
3dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
4dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
5dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
6gb|DQ463038.1| Sorghum propinquum putative protein phosphatase 2... 40 3.1
7emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chr... 40 3.1
8emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, comple... 40 3.1

>ref|XM_463995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1046

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 130 ctactcgnaaatgggtagatcaggagccttattcttcgaccca 172
           ||||||| | |||||||||||| ||| ||||||||| ||||||
Sbjct: 804 ctactcgaagatgggtagatcaagaggcttattctttgaccca 762



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 130     ctactcgnaaatgggtagatcaggagccttattcttcgaccca 172
               ||||||| | |||||||||||| ||| ||||||||| ||||||
Sbjct: 1566396 ctactcgaagatgggtagatcaagaggcttattctttgaccca 1566438



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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1007_D04
          Length = 125503

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                       
Query: 130  ctactcgnaaatgggtagatcaggagccttattcttcgaccca 172
            ||||||| | |||||||||||| ||| ||||||||| ||||||
Sbjct: 3499 ctactcgaagatgggtagatcaagaggcttattctttgaccca 3541



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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0576F08
          Length = 135314

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 130    ctactcgnaaatgggtagatcaggagccttattcttcgaccca 172
              ||||||| | |||||||||||| ||| ||||||||| ||||||
Sbjct: 129817 ctactcgaagatgggtagatcaagaggcttattctttgaccca 129859



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>dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103H03, full
           insert sequence
          Length = 1047

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 130 ctactcgnaaatgggtagatcaggagccttattcttcgaccca 172
           ||||||| | |||||||||||| ||| ||||||||| ||||||
Sbjct: 804 ctactcgaagatgggtagatcaagaggcttattctttgaccca 762



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>gb|DQ463038.1| Sorghum propinquum putative protein phosphatase 2C gene, exon 1 and
           partial cds
          Length = 2837

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 atttcggttttcctagctct 131
           ||||||||||||||||||||
Sbjct: 48  atttcggttttcctagctct 67



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>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete
              sequence
          Length = 218144

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     gaatcctttcctgtcagcaa 99
              ||||||||||||||||||||
Sbjct: 144258 gaatcctttcctgtcagcaa 144277



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>emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, complete sequence
          Length = 33266

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   attcttcgacccaacttctgcatt 183
             ||||||| ||||||||||||||||
Sbjct: 27948 attcttctacccaacttctgcatt 27971


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,598,062
Number of Sequences: 3902068
Number of extensions: 1598062
Number of successful extensions: 25657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25643
Number of HSP's gapped (non-prelim): 14
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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