>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  140 bits (354), Expect = 2e-33
 Identities = 69/106 (65%), Positives = 81/106 (76%)
 Frame = -2

Query: 525 MATSTMAFMPLKPSPSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGGGLEL 346
           M+   MA + LKPS S     S+L  ++P  R S   +++KKAKKVQT+QP+GPGGG+  
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLV-IVAKKAKKVQTAQPYGPGGGVAF 59

Query: 345 KDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYY 208
           K+GVDASGR AKGKGVYQFA KYGANVDGYSPIY PEEWSPSGD Y
Sbjct: 60  KEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 105

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  122 bits (306), Expect = 7e-28
 Identities = 60/108 (55%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
 Frame = -2

Query: 525 MATSTMAFMPLKPSPSTFSGHSQLQRIQPFTRSS-SFRVMSKKAKKVQTSQPFGPGGGLE 349
           MATS M+ + LKPS       S ++ +   +RSS SF V +   KK++  +P G GGG++
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 348 LKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYA 205
           L+DGVD+SGR   GKGVYQF  KYGANVDGYSPIYN EEW+P+GD YA
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYA 108

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  115 bits (289), Expect = 6e-26
 Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
 Frame = -2

Query: 525 MATSTMAFMPLKPSPSTFSGHS-QLQRIQPFTRSSS-FRVMSKKAKKVQTSQPFGPGGGL 352
           MA++ M+ + LKP   TF+     ++ +   TRSSS F+V++   KK++T +P+G  G +
Sbjct: 1   MASTVMSSLSLKP---TFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSM 57

Query: 351 ELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYY 208
            L+DGVDASGR  KGKGVYQ+  KYGANVDGYSPIYN +EWSPSGD Y
Sbjct: 58  ALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  115 bits (288), Expect = 8e-26
 Identities = 58/110 (52%), Positives = 76/110 (69%), Gaps = 4/110 (3%)
 Frame = -2

Query: 525 MATSTMAFMPLKPS----PSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGG 358
           MA++ M+ + LKP+     ++  G   L R      SSSF+V++   KK++T +P+G  G
Sbjct: 1   MASTVMSSLSLKPTFTLEKTSVKGLPSLAR-----SSSSFKVVASGVKKLKTDKPYGING 55

Query: 357 GLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYY 208
            + L+DGVDASGR  KGKGVYQ+  KYGANVDGYSPIYN +EWSPSGD Y
Sbjct: 56  SMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  114 bits (286), Expect = 1e-25
 Identities = 56/99 (56%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
 Frame = -2

Query: 501 MPLKPSPSTFSGHSQLQRIQPFTRSSS-FRVMSKKAKKVQTSQPFGPGGGLELKDGVDAS 325
           M LKP+P +    + ++ +    RSSS FRV +   KK++T +P+G  G + L+DGVDAS
Sbjct: 6   MSLKPAPFSVE-KTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDAS 64

Query: 324 GRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYY 208
           GR  KGKGVYQF  KYGANVDGYSPIYN ++WSPSGD Y
Sbjct: 65  GRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  110 bits (276), Expect = 2e-24
 Identities = 59/112 (52%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
 Frame = -2

Query: 525 MATSTM-AFMPLKPSPSTFS-----GHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGP 364
           MA S M + + LKP+  T       G   L R  P    SSFR+++   KK++T +PFG 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASP----SSFRIVASGVKKIKTDKPFGV 56

Query: 363 GGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYY 208
            G ++L+DGVDASGR  KG GVY+F  KYGANVDGYSPIYN +EWS SGD Y
Sbjct: 57  NGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  105 bits (263), Expect = 6e-23
 Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 6/112 (5%)
 Frame = -2

Query: 525 MATSTM-AFMPLKPSPSTFS-----GHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGP 364
           MA S M + + LKP+  T       G   L R +P     SF++++   KK++T +PFG 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARP-----SFKIVASGVKKIKTDKPFGI 55

Query: 363 GGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYY 208
            G ++L+DGVDASGR  KG GVY++  KYGANVDGYSPIYN  EWS SGD Y
Sbjct: 56  NGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVY 107

>SORC2_MOUSE (Q9EPR5) VPS10 domain-containing receptor SorCS2 precursor|
          Length = 1159

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = -2

Query: 537 LLSFMATSTMAFMPLKPSPSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGG 358
           LL  +  +    M   P P       Q+ R+ P  R+ S     +K  + + S+P  PG 
Sbjct: 38  LLLLVLVAACGAMGRSPQPGRQGPGVQITRLLPAGRTESG---DRKDPQARESEPSVPGL 94

Query: 357 GLELKDGVDASGRPAKGKG 301
           G     G    G PA GKG
Sbjct: 95  GPGSASGPSTDGAPAPGKG 113

>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 339 GVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPS 220
           G+ A+GR     G   F+    ++  G+SP Y+P  WSP+
Sbjct: 27  GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 408 SKKAKKVQTSQPFGPG--GGLELKDGVDASGRPAKGKGVYQFASKYGAN 268
           SK+ K+ +      P   GG+ L DG  A+ R A+G  +  FA K GA+
Sbjct: 382 SKRQKRNEYESMQAPNVIGGVRLPDGKGATIRLARGASLADFADKIGAD 430

>ALB2_PEA (P08688) Albumin-2 (PA2)|
          Length = 231

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 396 KKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQFASKYGANVD 262
           KK+    PF  G   E  +G+DA+ R  +GK VY F     A +D
Sbjct: 103 KKIADMFPFFEGTVFE--NGIDAAYRSTRGKEVYLFKGDQYARID 145

>PKSL_BACSU (Q05470) Putative polyketide synthase pksL (PKS)|
          Length = 4538

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 441  PFTRSSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVD--ASGRPA 313
            PF R   +  ++ KA++ +T +PF P   +  K  VD  ASG+PA
Sbjct: 2527 PFARDRYWIDVNAKAEEKRTEEPFAPVQPVIPKPSVDREASGKPA 2571

>TOLB_BARHE (Q6G5R6) Protein tolB precursor|
          Length = 443

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = -2

Query: 438 FTRSSSFRVMSK--KAKKVQTSQPFGPGGGLELKDGVDASGRP------AKGKGVYQFAS 283
           +T     R+M++      + TS  + P G  ++    D SG+P      A G  + + +S
Sbjct: 281 YTMDLRTRMMTRLTTTSAIDTSASYSPDG-TKIVFSSDRSGKPQIYTMNADGSNLQRISS 339

Query: 282 KYGANVDGYSPIYNPEEWSPSGDYYA 205
             G+        Y+   WSP GDY A
Sbjct: 340 NEGS--------YSTPIWSPRGDYIA 357

>PQQB_METFL (Q50437) Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone|
           biosynthesis protein B) (Coenzyme PQQ synthesis protein
           D)
          Length = 305

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 414 VMSKKAKKVQTSQPFGPGGGLELKDGVDASGR 319
           +MSKKA+ +  +   GPGG +E+ DG   + R
Sbjct: 236 LMSKKARDIGHNPQSGPGGMMEVLDGYPGARR 267

>HUCE1_MOUSE (Q9DB85) Cerebral protein 1 homolog|
          Length = 457

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 519 TSTMAFMPLKPSPSTFSGHSQ--LQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGGGLE 349
           TST    P KPSP + S +S   L R Q   R  + R    K + +QT +   P   +E
Sbjct: 161 TSTATIDPSKPSPESMSPNSSHTLSRKQWRNRQKNKRRHKNKFRPLQTPEQAPPKASIE 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,968,257
Number of Sequences: 219361
Number of extensions: 1702626
Number of successful extensions: 5021
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5017
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)