ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 293 3e-76
2emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 190 3e-45
3ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 147 4e-32
4dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
7dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
8emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 100 9e-18
9emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 70 8e-09
10dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
11gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 62 2e-06
12gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 56 1e-04
13gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 56 1e-04
14emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 54 5e-04
15emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 54 5e-04
16emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 54 5e-04
17emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 50 0.008
18ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 48 0.031
19gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 48 0.031
20gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 48 0.031
21emb|X55970.1|ATPSII10 A.thaliana gene for photosystem II 10 kDa ... 48 0.031
22emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 48 0.031
23emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 48 0.031
24emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 48 0.031
25emb|BX818253.1|CNS0AAW5 Arabidopsis thaliana Full-length cDNA Co... 48 0.031
26gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 48 0.031
27emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 48 0.031
28gb|AC002986.1|YUP8H12R Arabidopsis thaliana chromosome 1 YAC YUP... 48 0.031
29ref|XM_430158.1| PREDICTED: Gallus gallus hypothetical gene supp... 44 0.48
30gb|AC097653.2| Homo sapiens BAC clone RP11-148L24 from 4, comple... 44 0.48
31emb|CR387115.1| Gallus gallus finished cDNA, clone ChEST474m11 44 0.48
32emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chr... 42 1.9
33emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chro... 42 1.9
34emb|AL137099.1|SPBP4G3 S.pombe chromosome II p1 p4G3 42 1.9
35dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
36gb|AY185358.1| Brassica rapa subsp. pekinensis photosystem II 10... 42 1.9
37dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
38emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in... 42 1.9
39emb|BX000485.4| Zebrafish DNA sequence from clone CH211-142G3, c... 42 1.9
40gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 1.9
41gb|AC140074.2| Mus musculus BAC clone RP23-141A5 from chromosome... 40 7.5
42emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chr... 40 7.5
43gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 7.5
44gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 7.5
45emb|CT009506.5| Pig DNA sequence from clone CH242-216I3 on chrom... 40 7.5
46gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence 40 7.5
47emb|AL356916.17| Human DNA sequence from clone RP4-795A5 on chro... 40 7.5
48gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence 40 7.5
49gb|AC090480.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, R... 40 7.5
50gb|AC011451.6| Homo sapiens chromosome 19 clone CTC-325H20, comp... 40 7.5
51dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, co... 40 7.5
52gb|AC013286.9| Homo sapiens chromosome 10 clone RP11-369F10, com... 40 7.5
53dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
54dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
55emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 40 7.5
56emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 40 7.5
57emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 40 7.5
58emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on ch... 40 7.5
59gb|AC145087.14| Mus musculus chromosome 1, clone RP23-255P18, co... 40 7.5
60dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
61gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome... 40 7.5
62emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
63gb|AC151573.2| Mus musculus BAC clone RP23-410B24 from 8, comple... 40 7.5 
>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  293 bits (148), Expect = 3e-76
 Identities = 275/316 (87%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 tcaagaagccaaagcactagtattgtaaacaagaagagcaccacccagcagaattccagc 164
           |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| 
Sbjct: 405 tcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccaga 346

                                                                       
Query: 165 aagagtagccacccagnagcaacaaccctgtctttcctcccgcatagtaatcaccacttg 224
           ||||||  |  ||||| ||||||||||||||||||||||| | |||   |||||||||||
Sbjct: 345 aagagtgactgcccag-agcaacaaccctgtctttcctccagtataaacatcaccacttg 287

                                                                       
Query: 225 gagaccattcttctgggttatatatcgggctgtacccatcaacatttgctccgtacttgc 284
           | |||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 286 gtgaccattcctctgggttatatattgggctgtatccatcaacattagctccatacttgc 227

                                                                       
Query: 285 tggcaaactggtagacgcccttccccttggctggccttccagatgcatcaacgccatctt 344
           |||||||||||||||| || |||||||||  ||||||||| || || ||||| || ||||
Sbjct: 226 tggcaaactggtagacccctttccccttgattggccttccggacgcgtcaacaccgtctt 167

                                                                       
Query: 345 tcaattccaatcctcccccaggcccgaaaggctgagaagtctgaactttctttgcctttt 404
           |||  | |  |||||| ||||| |||||||||||||||||||| |  |||||||| ||||
Sbjct: 166 tcaggttcggtcctcctccaggtccgaaaggctgagaagtctggatcttctttgcttttt 107

                           
Query: 405 tggacattactctgaa 420
           ||| ||||||||||||
Sbjct: 106 tggccattactctgaa 91
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>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  190 bits (96), Expect = 3e-45
 Identities = 205/240 (85%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 100 aggcttcaagaagccaaagcactagtattgtaaacaagaagagcaccacccagcagaatt 159
           |||||||| |||||||| || |||||| |||| |||||||||||||| ||||||||||||
Sbjct: 448 aggcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaatt 389

                                                                       
Query: 160 ccagcaagagtagccacccagnagcaacaaccctgtctttcctcccgcatagtaatcacc 219
           |||||||||||  |  ||||| || |||| ||| |||||||||||  ||||    || ||
Sbjct: 388 ccagcaagagtcactgcccag-agaaacagccccgtctttcctccaacataaacgtcgcc 330

                                                                       
Query: 220 acttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgctccgta 279
           |||||||||||| ||||||||  | ||||| |||||||||||||||||||||||||| ||
Sbjct: 329 acttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccata 270

                                                                       
Query: 280 cttgctggcaaactggtagacgcccttccccttggctggccttccagatgcatcaacgcc 339
           ||||  |||||||||||| || |||||||||||||||  ||||||||| ||||| |||||
Sbjct: 269 cttgtcggcaaactggtaaacacccttccccttggctacccttccagacgcatcgacgcc 210
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  147 bits (74), Expect = 4e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctgtctttcctcccgcatagtaatcaccacttggagaccattcttctgggttatatatc 250
           |||| |||||||||  |||||  ||||||| ||| |||||||||||||||| ||||||| 
Sbjct: 398 cctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatatatt 339

                                                                       
Query: 251 gggctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccc 310
           |||||||||||||||||||||||||| |||||| ||| ||||||||| |  ||||| |||
Sbjct: 338 gggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccc 279

                                     
Query: 311 ttggctggccttccagatgcatcaac 336
           ||||||  ||||||||||||||||||
Sbjct: 278 ttggctacccttccagatgcatcaac 253
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  147 bits (74), Expect = 4e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctgtctttcctcccgcatagtaatcaccacttggagaccattcttctgggttatatatc 250
           |||| |||||||||  |||||  ||||||| ||| |||||||||||||||| ||||||| 
Sbjct: 399 cctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatatatt 340

                                                                       
Query: 251 gggctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccc 310
           |||||||||||||||||||||||||| |||||| ||| ||||||||| |  ||||| |||
Sbjct: 339 gggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccc 280

                                     
Query: 311 ttggctggccttccagatgcatcaac 336
           ||||||  ||||||||||||||||||
Sbjct: 279 ttggctacccttccagatgcatcaac 254
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  147 bits (74), Expect = 4e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctgtctttcctcccgcatagtaatcaccacttggagaccattcttctgggttatatatc 250
           |||| |||||||||  |||||  ||||||| ||| |||||||||||||||| ||||||| 
Sbjct: 398 cctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatatatt 339

                                                                       
Query: 251 gggctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccc 310
           |||||||||||||||||||||||||| |||||| ||| ||||||||| |  ||||| |||
Sbjct: 338 gggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccc 279

                                     
Query: 311 ttggctggccttccagatgcatcaac 336
           ||||||  ||||||||||||||||||
Sbjct: 278 ttggctacccttccagatgcatcaac 253
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  121 bits (61), Expect = 3e-24
 Identities = 92/101 (91%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                           
Query: 102     gcttcaagaagccaaagcactagtattgtaaacaagaagagcaccacccagcagaattcc 161
               ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                        
Query: 162     agcaagagtagccacccagnagcaacaaccctgtctttcct 202
               || ||||||  |  ||||| |||||||||||||||||||||
Sbjct: 2490062 agaaagagtgactgcccag-agcaacaaccctgtctttcct 2490023



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                         
Query: 254     ctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccct 311
               ||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 368     ccgaaaggctgagaagtctgaactttctttgcctttttggacattactctgaa 420
               |||||||||||||||||||| |  |||||||| ||||||| ||||||||||||
Sbjct: 2489327 ccgaaaggctgagaagtctggatcttctttgcttttttggccattactctgaa 2489275



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 254     ctgtacccatcaacatttgctccgtacttgctggcaaactggta 297
               ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggta 2487093



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                         
Query: 214     atcaccacttggagaccattcttctgggttatatatcgggct 255
               |||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 2489892 atcaccacttggtgaccattcctctgggttatatattgggct 2489851



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 214     atcaccacttggagaccattcttctgggttatatatcgggctgta 258
               ||||||| ||| |||||||||||||||| ||||||| ||||||||
Sbjct: 2487419 atcaccagttgaagaccattcttctggggtatatattgggctgta 2487375



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 118     gcactagtattgtaaacaagaagagcaccacccagcagaattccagcaagagt 170
               |||||||| ||||| ||||||| ||| || || |  |||||||||||||||||
Sbjct: 2487638 gcactagtgttgtagacaagaatagcgccgccaactagaattccagcaagagt 2487586



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 309     ccttggctggccttccagatgcatcaac 336
               ||||||||  ||||||||||||||||||
Sbjct: 2486995 ccttggctacccttccagatgcatcaac 2486968
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  121 bits (61), Expect = 3e-24
 Identities = 92/101 (91%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                         
Query: 102   gcttcaagaagccaaagcactagtattgtaaacaagaagagcaccacccagcagaattcc 161
             ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                      
Query: 162   agcaagagtagccacccagnagcaacaaccctgtctttcct 202
             || ||||||  |  ||||| |||||||||||||||||||||
Sbjct: 55042 agaaagagtgactgcccag-agcaacaaccctgtctttcct 55003



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 254   ctgtacccatcaacatttgctccgtacttgctggcaaactggtagacgcccttcccct 311
             ||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 368   ccgaaaggctgagaagtctgaactttctttgcctttttggacattactctgaa 420
             |||||||||||||||||||| |  |||||||| ||||||| ||||||||||||
Sbjct: 54307 ccgaaaggctgagaagtctggatcttctttgcttttttggccattactctgaa 54255



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 254   ctgtacccatcaacatttgctccgtacttgctggcaaactggta 297
             ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggta 52073



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 214   atcaccacttggagaccattcttctgggttatatatcgggct 255
             |||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 54872 atcaccacttggtgaccattcctctgggttatatattgggct 54831



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 214   atcaccacttggagaccattcttctgggttatatatcgggctgta 258
             ||||||| ||| |||||||||||||||| ||||||| ||||||||
Sbjct: 52399 atcaccagttgaagaccattcttctggggtatatattgggctgta 52355



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 118   gcactagtattgtaaacaagaagagcaccacccagcagaattccagcaagagt 170
             |||||||| ||||| ||||||| ||| || || |  |||||||||||||||||
Sbjct: 52618 gcactagtgttgtagacaagaatagcgccgccaactagaattccagcaagagt 52566



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 309   ccttggctggccttccagatgcatcaac 336
             ||||||||  ||||||||||||||||||
Sbjct: 51975 ccttggctacccttccagatgcatcaac 51948
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 94/109 (86%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                       
Query: 218 ccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgctccg 277
           |||||||||||||| ||||||||  | ||||| |||||||||||||||||||||||||| 
Sbjct: 320 ccacttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctcca 261

                                                            
Query: 278 tacttg-ctggcaaactggtagacgcccttccccttggctggccttcca 325
           |||||| | |   |||||||| || |||||||||||||||  |||||||
Sbjct: 260 tacttgtcggnhdaactggtaaacacccttccccttggctacccttcca 212
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgc 273
           |||||||||||||||||| || |||| ||| || || |||||||| ||||||||||||||
Sbjct: 328 atcaccacttggagaccagtcatctgtgttgtagatggggctgtatccatcaacatttgc 269

              
Query: 274 tcc 276
           |||
Sbjct: 268 tcc 266
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 254   ctgtacccatcaacatttgctccgtacttgctggcaaactggta 297
             ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggta 60840



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 214   atcaccacttggagaccattcttctgggttatatatcgggctgta 258
             ||||||| ||| |||||||||||||||| ||||||| ||||||||
Sbjct: 61166 atcaccagttgaagaccattcttctggggtatatattgggctgta 61122



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 118   gcactagtattgtaaacaagaagagcaccacccagcagaattccagcaagagt 170
             |||||||| ||||| ||||||| ||| || || |  |||||||||||||||||
Sbjct: 61385 gcactagtgttgtagacaagaatagcgccgccaactagaattccagcaagagt 61333



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 309   ccttggctggccttccagatgcatcaac 336
             ||||||||  ||||||||||||||||||
Sbjct: 60742 ccttggctacccttccagatgcatcaac 60715
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgc 273
           |||||| ||||||||||| || |||| ||| || || |||||||| ||||||||||||||
Sbjct: 183 atcaccgcttggagaccagtcatctgtgttgtagatggggctgtatccatcaacatttgc 124

              
Query: 274 tcc 276
           |||
Sbjct: 123 tcc 121
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgc 273
           |||||| |||| |||||| || |||| ||| || || |||||||| ||||||||||||||
Sbjct: 119 atcaccgcttgnagaccagtcatctgtgttgtagatggggctgtatccatcaacatttgc 60

              
Query: 274 tcc 276
           |||
Sbjct: 59  tcc 57
to top
>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgc 273
           ||||||||| ||||||||||| |||||    || ||||||||||| ||||||||||||||
Sbjct: 388 atcaccactaggagaccattcgtctggtgagtagatcgggctgtagccatcaacatttgc 329



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 111 agccaaagcactagtattgtaaacaagaagagcaccacccagcagaattccagcaagagt 170
           |||||||||||| ||  |||| |||||||||||||| ||   ||||| ||||||||||||
Sbjct: 490 agccaaagcactggtgctgtacacaagaagagcacctccacccagaagtccagcaagagt 431
to top
>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgc 273
           |||||||||||||||||| || |||| ||| || || || ||||| ||||||||||| ||
Sbjct: 309 atcaccacttggagaccactcatctgtgttgtagatgggactgtatccatcaacattagc 250

              
Query: 274 tcc 276
           |||
Sbjct: 249 tcc 247
to top
>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 289 aaactggtagacgcccttccccttggctggccttccagatgcatcaacgcc 339
           ||||||||| || |||||||||||||||  ||||||||| ||||| |||||
Sbjct: 247 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgcc 197
to top
>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatttgc 273
           ||||||||||||||||||||| || | ||| || || || ||||| ||||||||||| ||
Sbjct: 286 atcaccacttggagaccattcatccgtgttgtagatgggactgtatccatcaacattagc 227

              
Query: 274 tcc 276
           |||
Sbjct: 226 tcc 224
to top
>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 214 atcaccacttggagaccattcttctgggttatatatcgggctgtacccatcaacatt 270
           ||||||||||||||||||||| || | ||| || || || ||||| |||||||||||
Sbjct: 309 atcaccacttggagaccattcatccgtgttgtagatgggactgtatccatcaacatt 253
to top
>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 484 agccaaagcacttgtgttgtacacaagaagagcacc 449
to top
>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 417 agccaaagcacttgtgttgtacacaagaagagcacc 382
to top
>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 467 agccaaagcacttgtgttgtacacaagaagagcacc 432
to top
>emb|X55970.1|ATPSII10 A.thaliana gene for photosystem II 10 kDa polypeptide
          Length = 1388

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 111  agccaaagcactagtattgtaaacaagaagagcacc 146
            |||||||||||| || ||||| ||||||||||||||
Sbjct: 1185 agccaaagcacttgtgttgtacacaagaagagcacc 1150
to top
>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 450 agccaaagcacttgtgttgtacacaagaagagcacc 415
to top
>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 450 agccaaagcacttgtgttgtacacaagaagagcacc 415
to top
>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 453 agccaaagcacttgtgttgtacacaagaagagcacc 418
to top
>emb|BX818253.1|CNS0AAW5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL6ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 605

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 454 agccaaagcacttgtgttgtacacaagaagagcacc 419
to top
>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||||||| || ||||| ||||||||||||||
Sbjct: 484 agccaaagcacttgtgttgtacacaagaagagcacc 449
to top
>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 111  agccaaagcactagtattgtaaacaagaagagcacc 146
            |||||||||||| || ||||| ||||||||||||||
Sbjct: 1159 agccaaagcacttgtgttgtacacaagaagagcacc 1124
to top
>gb|AC002986.1|YUP8H12R Arabidopsis thaliana chromosome 1 YAC YUP8H12R sequence, complete
              sequence
          Length = 181925

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 111    agccaaagcactagtattgtaaacaagaagagcacc 146
              |||||||||||| || ||||| ||||||||||||||
Sbjct: 122839 agccaaagcacttgtgttgtacacaagaagagcacc 122874
to top
>ref|XM_430158.1| PREDICTED: Gallus gallus hypothetical gene supported by CR387115
            (LOC424511), mRNA
          Length = 1430

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 386  tgaactttctttgcctttttgg 407
            ||||||||||||||||||||||
Sbjct: 1123 tgaactttctttgcctttttgg 1144
to top
>gb|AC097653.2| Homo sapiens BAC clone RP11-148L24 from 4, complete sequence
          Length = 145496

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 314   gctggccttccagatgcatcaa 335
             ||||||||||||||||||||||
Sbjct: 19125 gctggccttccagatgcatcaa 19146
to top
>emb|CR387115.1| Gallus gallus finished cDNA, clone ChEST474m11
          Length = 616

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 386 tgaactttctttgcctttttgg 407
           ||||||||||||||||||||||
Sbjct: 314 tgaactttctttgcctttttgg 335
to top
>emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chromosome 13 Contains 3
             novel genes, a meningioma-expressed antigen 6/11 (MEA6)
             (MEA11) pseudogene and the 3' end of the ATP7B gene for
             ATPase, Cu++ transporting, beta polypeptide (Wilson
             disease), complete sequence
          Length = 169104

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   gaaaggctgagaagtctgaac 390
             |||||||||||||||||||||
Sbjct: 84146 gaaaggctgagaagtctgaac 84166
to top
>emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chromosome 2 Contains the
             5' end of the Cdh22 gene for cadherin 22, the Ovcov1 gene
             for ovarian cancer overexpressed 1, the Elmo2 gene for
             engulfment and cell motility 2, ced-12 homolog (C.
             elegans), the 3' end of a putative novel zinc finger
             protein and three CpG islands, complete sequence
          Length = 144243

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 313   ggctggccttccagatgcatc 333
             |||||||||||||||||||||
Sbjct: 27058 ggctggccttccagatgcatc 27078
to top
>emb|AL137099.1|SPBP4G3 S.pombe chromosome II p1 p4G3
          Length = 14190

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 79   catagtttggcttgctatacc 99
            |||||||||||||||||||||
Sbjct: 2776 catagtttggcttgctatacc 2796
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 62      ccttgcatggtacagtacata 82
               |||||||||||||||||||||
Sbjct: 9488095 ccttgcatggtacagtacata 9488075
to top
>gb|AY185358.1| Brassica rapa subsp. pekinensis photosystem II 10kDa polypeptide
           mRNA, partial cds
          Length = 416

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 111 agccaaagcactagtattgtaaacaagaagagc 143
           |||||||||||| || ||||| |||||||||||
Sbjct: 8   agccaaagcacttgtgttgtacacaagaagagc 40
to top
>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0059O19
          Length = 144386

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    ccttgcatggtacagtacata 82
             |||||||||||||||||||||
Sbjct: 75717 ccttgcatggtacagtacata 75697
to top
>emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in linkage group 25,
             complete sequence
          Length = 120282

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 527   aatgacagtaagctctctctc 547
             |||||||||||||||||||||
Sbjct: 37938 aatgacagtaagctctctctc 37958
to top
>emb|BX000485.4| Zebrafish DNA sequence from clone CH211-142G3, complete sequence
          Length = 159843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 527    aatgacagtaagctctctctc 547
              |||||||||||||||||||||
Sbjct: 100205 aatgacagtaagctctctctc 100225
to top
>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 111 agccaaagcactagtattgtaaacaagaagagc 143
           |||||||||||| || ||||| |||||||||||
Sbjct: 432 agccaaagcacttgtgttgtacacaagaagagc 400
to top
>gb|AC140074.2| Mus musculus BAC clone RP23-141A5 from chromosome 8, complete sequence
          Length = 190381

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    gcatggtacagtacatagtt 85
             ||||||||||||||||||||
Sbjct: 10423 gcatggtacagtacatagtt 10404
to top
>emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chromosome 14, complete
             sequence
          Length = 160805

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   tggagatggtttcagaggca 500
             ||||||||||||||||||||
Sbjct: 36326 tggagatggtttcagaggca 36307
to top
>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   ccagcagaattccagcaaga 168
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
to top
>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  ccagcagaattccagcaaga 168
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
to top
>emb|CT009506.5| Pig DNA sequence from clone CH242-216I3 on chromosome 17, complete
             sequence
          Length = 108192

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   gctggccttccagatgcatc 333
             ||||||||||||||||||||
Sbjct: 30524 gctggccttccagatgcatc 30505
to top
>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence
          Length = 202386

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   agaagtctgaactttctttg 398
             ||||||||||||||||||||
Sbjct: 93856 agaagtctgaactttctttg 93837
to top
>emb|AL356916.17| Human DNA sequence from clone RP4-795A5 on chromosome 1p34.1-34.3
             Contains the 3' end of a novel gene, complete sequence
          Length = 117012

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tgcatggtacagtacatagt 84
             ||||||||||||||||||||
Sbjct: 73512 tgcatggtacagtacatagt 73531
to top
>gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence
          Length = 167543

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 399    cctttttggacattactctgaaag 422
              |||||||||||||| |||||||||
Sbjct: 133870 cctttttggacattcctctgaaag 133847
to top
>gb|AC090480.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-248L18, Complete
             Sequence, complete sequence
          Length = 231039

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    gcatggtacagtacatagtt 85
             ||||||||||||||||||||
Sbjct: 73292 gcatggtacagtacatagtt 73273
to top
>gb|AC011451.6| Homo sapiens chromosome 19 clone CTC-325H20, complete sequence
          Length = 180672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cattcttctgggttatatat 249
              ||||||||||||||||||||
Sbjct: 111487 cattcttctgggttatatat 111468
to top
>dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, complete cds
          Length = 34849

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   tggagatggtttcagaggca 500
             ||||||||||||||||||||
Sbjct: 30565 tggagatggtttcagaggca 30546
to top
>gb|AC013286.9| Homo sapiens chromosome 10 clone RP11-369F10, complete sequence
          Length = 178357

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 421   agatgatgatcgtgtgaaaggctg 444
             ||||| ||||||||||||||||||
Sbjct: 34342 agatgctgatcgtgtgaaaggctg 34365
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 319      ccttccagatgcatcaacgc 338
                ||||||||||||||||||||
Sbjct: 26397799 ccttccagatgcatcaacgc 26397780
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 378      gagaagtctgaactttcttt 397
                ||||||||||||||||||||
Sbjct: 27342147 gagaagtctgaactttcttt 27342166
to top
>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||| ||| || ||||| ||||||||||||||
Sbjct: 450 agccaaagaacttgtgttgtacacaagaagagcacc 415
to top
>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||| ||| || ||||| ||||||||||||||
Sbjct: 446 agccaaaggacttgtgttgtacacaagaagagcacc 411
to top
>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 111 agccaaagcactagtattgtaaacaagaagagcacc 146
           |||||||| ||| || ||||| ||||||||||||||
Sbjct: 449 agccaaaggacttgtgttgtacacaagaagagcacc 414
to top
>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete
             sequence
          Length = 230114

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   agaagtctgaactttctttg 398
             ||||||||||||||||||||
Sbjct: 77699 agaagtctgaactttctttg 77680
to top
>gb|AC145087.14| Mus musculus chromosome 1, clone RP23-255P18, complete sequence
          Length = 187470

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   aatgacagtaagctctctct 546
             ||||||||||||||||||||
Sbjct: 78038 aatgacagtaagctctctct 78019
to top
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   gagaagtctgaactttcttt 397
             ||||||||||||||||||||
Sbjct: 43674 gagaagtctgaactttcttt 43693
to top
>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence
          Length = 224638

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   tggagatggtttcagaggca 500
             ||||||||||||||||||||
Sbjct: 58635 tggagatggtttcagaggca 58654
to top
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
             complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   ccttccagatgcatcaacgc 338
             ||||||||||||||||||||
Sbjct: 38432 ccttccagatgcatcaacgc 38413
to top
>gb|AC151573.2| Mus musculus BAC clone RP23-410B24 from 8, complete sequence
          Length = 202731

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    gcatggtacagtacatagtt 85
             ||||||||||||||||||||
Sbjct: 38770 gcatggtacagtacatagtt 38789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9,149,224
Number of Sequences: 3902068
Number of extensions: 9149224
Number of successful extensions: 92198
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91952
Number of HSP's gapped (non-prelim): 240
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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