ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15NG4_PINTA (Q6J163) Auxin-induced protein 5NG4 86 7e-17

>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4|
          Length = 410

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 42/60 (70%), Positives = 51/60 (85%)
 Frame = -2

Query: 598 EKVKLFMGVLALQFLLAGFHIVSRAALNMGISKLVFIVYRNVISLALLAPFAYFLEKKDR 419
           E+VKL   +LALQF  AGFHIVSRAALNMG+SK+VF VYRN+++L L+ P AYFLEKK+R
Sbjct: 15  ERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKER 74



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 419 AAVILGDQLYTXXXXXXXXXXXXLYFVLWGKSEEKK 312
           A++ILG+Q Y             LY VLWGKSEEK+
Sbjct: 310 ASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKR 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,875,789
Number of Sequences: 219361
Number of extensions: 1059924
Number of successful extensions: 3367
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top