ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Pro... 45 2e-04
2SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (C... 40 0.006
3OR33B_DROME (P81915) Odorant receptor 33b 32 1.3
4DCPS_YEAST (Q06151) Scavenger mRNA decapping enzyme DcpS (EC 3.-... 31 2.8
5KLC2_MOUSE (O88448) Kinesin light chain 2 (KLC 2) 30 6.3

>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box|
           domain protein 14)
          Length = 632

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 46/74 (62%)
 Frame = -1

Query: 598 ISSLVGLMRRGTPKGKENAVSALYEICRRGGSTLVRRVAKIPGLNTVIQNIMLTGTKRAK 419
           I  LV ++R G+P+ +ENA + L+ +C   G+     VA+  G +  ++ +   GT RAK
Sbjct: 553 IPVLVEIIRTGSPRNRENAAAILWYLCI--GNIERLNVAREVGADVALKELTENGTDRAK 610

Query: 418 KKASLIVKMCQRSQ 377
           +KA+ ++++ Q+++
Sbjct: 611 RKAASLLELIQQTE 624



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>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/91 (26%), Positives = 46/91 (50%)
 Frame = -1

Query: 655 ALLMKQPSVVHHVGSSETVISSLVGLMRRGTPKGKENAVSALYEICRRGGSTLVRRVAKI 476
           ++L   P     +G++E V   LV ++  GTP+ +ENA + +  +C      +    A+ 
Sbjct: 557 SILSSHPEGKAAIGAAEPV-PVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQE 615

Query: 475 PGLNTVIQNIMLTGTKRAKKKASLIVKMCQR 383
            G+   ++ + L GT R K+KA  +++   R
Sbjct: 616 CGIMVPLRELALNGTDRGKRKAVQLLERMSR 646



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>OR33B_DROME (P81915) Odorant receptor 33b|
          Length = 379

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 DIADGIWLLWHILTIKLAFFLARFVPVSMMFCITVFNP 473
           DI    WL WH+L ++  FFL R + + +   +T++ P
Sbjct: 12  DIYRTYWLYWHLLGLESNFFLNRLLDLVITIFVTIWYP 49



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>DCPS_YEAST (Q06151) Scavenger mRNA decapping enzyme DcpS (EC 3.-.-.-) (DCS-1)|
           (Hint-related 7meGMP-directed hydrolase 1)
          Length = 350

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -3

Query: 569 GNSKGQGECSVRSIRDMSSWWLNIGAESSKDSGVEYCNTEHHAHWNKARQEE--SKLDRQ 396
           GNS   G+  +  + D+      +G E   +  + Y   E+H  W +  +EE   +L+R 
Sbjct: 280 GNSIAAGKAIL--LEDIIEMLNYLGPEGYMNKTITYAIGENHDLWKRGLEEELTKQLERD 337

Query: 395 DVPKKPNAVS 366
            +PK P  V+
Sbjct: 338 GIPKIPKIVN 347



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>KLC2_MOUSE (O88448) Kinesin light chain 2 (KLC 2)|
          Length = 599

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 32/109 (29%), Positives = 46/109 (42%)
 Frame = -1

Query: 610 SETVISSLVGLMRRGTPKGKENAVSALYEICRRGGSTLVRRVAKIPGLNTVIQNIMLTGT 431
           S TV ++L  L     P+GK  A   L +   R      R+    P   T +  ++  G+
Sbjct: 443 SPTVNTTLRTLGALYRPEGKLEAAHTLEDCASRS-----RKQGLDPASQTKVVELLKDGS 497

Query: 430 KRAKKKASLIVKMCQRSQMPSAMSLGTSLRAVDHSLVGNSSLRRAASFG 284
            R  ++ S  V   Q     S   L  S  A + S  G+ SLRR+ SFG
Sbjct: 498 GRGHRRGSRDVAGPQ-----SESDLEESGPAAEWSGDGSGSLRRSGSFG 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,968,426
Number of Sequences: 219361
Number of extensions: 1956923
Number of successful extensions: 4742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4742
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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