ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1e09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 379 bits (191), Expect = e-102 Identities = 362/419 (86%) Strand = Plus / Minus Query: 234 acctagggcacgtgcactgatatcgaaacagggttcgacaactctccactgccaaagctc 293 ||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 7614110 acctagggcacctgcactgatatcgaaatcgggtttgacaattctccactgccaaagctc 7614051 Query: 294 gcagcacgcctcaatgagctgttacctaccaaagaatgatcaaccgccctcaagctagtc 353 ||||||||||| |||| | |||| |||||||| ||| ||||||| | |||| | || Sbjct: 7614050 gcagcacgccttaatgtgttgttccctaccaatgaacgatcaacgactgtcaatgtgctc 7613991 Query: 354 cctagcgacattgctgacggcatttggcttctttggcacatcttgacgatcaagcttgct 413 ||||| | ||||||||| |||||||||||||| |||||||||||||| |||| ||||||| Sbjct: 7613990 cctagtgccattgctgatggcatttggcttctctggcacatcttgacaatcaggcttgct 7613931 Query: 414 ttcttcttggcgcgctttgttccagtgagcatgatgttctgtattacagtattcaacccc 473 ||||||||||||||||||||||| |||| ||||| |||||||||| || |||||||| Sbjct: 7613930 ttcttcttggcgcgctttgttccgttgagggtgatggtctgtattactgtgttcaaccct 7613871 Query: 474 ggaatctttgctactctccgcaccaatgttgagccaccacgacgacatatctcgtataga 533 |||||||||||||||||| ||||||| | ||||| || |||||||| ||||| |||| | Sbjct: 7613870 ggaatctttgctactctctgcaccaaagcagagccgccccgacgacaaatctcatataaa 7613811 Query: 534 gcggacactgcattctccttgccctttggagttccccgcctcattaatccaacgaggcta 593 || || |||||||| ||||| || |||||||||||||||| |||||| ||||| |||||| Sbjct: 7613810 gctgagactgcattttccttaccttttggagttccccgccgcattaacccaacaaggcta 7613751 Query: 594 ctgatcacagtttcagagctcccaacatgatgcacaacagaaggctgcttcatcagcag 652 |||||||||||||||||||||||||| ||||||| | || || |||||||||||||| Sbjct: 7613750 gtgatcacagtttcagagctcccaacaagatgcacgatggatggttgcttcatcagcag 7613692 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 111 tatattgcaagtattagttcctttagattaaatgttgtataccttcattttgagcatgca 170 |||||| | ||||||| |||||| |||||||| ||||||||||||| || ||||||| | Sbjct: 7614237 tatatttcgagtattaaatcctttggattaaattttgtataccttca-ttggagcatgaa 7614179 Query: 171 atgaaagaa 179 ||||||||| Sbjct: 7614178 atgaaagaa 7614170
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 379 bits (191), Expect = e-102 Identities = 362/419 (86%) Strand = Plus / Minus Query: 234 acctagggcacgtgcactgatatcgaaacagggttcgacaactctccactgccaaagctc 293 ||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 30870 acctagggcacctgcactgatatcgaaatcgggtttgacaattctccactgccaaagctc 30811 Query: 294 gcagcacgcctcaatgagctgttacctaccaaagaatgatcaaccgccctcaagctagtc 353 ||||||||||| |||| | |||| |||||||| ||| ||||||| | |||| | || Sbjct: 30810 gcagcacgccttaatgtgttgttccctaccaatgaacgatcaacgactgtcaatgtgctc 30751 Query: 354 cctagcgacattgctgacggcatttggcttctttggcacatcttgacgatcaagcttgct 413 ||||| | ||||||||| |||||||||||||| |||||||||||||| |||| ||||||| Sbjct: 30750 cctagtgccattgctgatggcatttggcttctctggcacatcttgacaatcaggcttgct 30691 Query: 414 ttcttcttggcgcgctttgttccagtgagcatgatgttctgtattacagtattcaacccc 473 ||||||||||||||||||||||| |||| ||||| |||||||||| || |||||||| Sbjct: 30690 ttcttcttggcgcgctttgttccgttgagggtgatggtctgtattactgtgttcaaccct 30631 Query: 474 ggaatctttgctactctccgcaccaatgttgagccaccacgacgacatatctcgtataga 533 |||||||||||||||||| ||||||| | ||||| || |||||||| ||||| |||| | Sbjct: 30630 ggaatctttgctactctctgcaccaaagcagagccgccccgacgacaaatctcatataaa 30571 Query: 534 gcggacactgcattctccttgccctttggagttccccgcctcattaatccaacgaggcta 593 || || |||||||| ||||| || |||||||||||||||| |||||| ||||| |||||| Sbjct: 30570 gctgagactgcattttccttaccttttggagttccccgccgcattaacccaacaaggcta 30511 Query: 594 ctgatcacagtttcagagctcccaacatgatgcacaacagaaggctgcttcatcagcag 652 |||||||||||||||||||||||||| ||||||| | || || |||||||||||||| Sbjct: 30510 gtgatcacagtttcagagctcccaacaagatgcacgatggatggttgcttcatcagcag 30452 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 111 tatattgcaagtattagttcctttagattaaatgttgtataccttcattttgagcatgca 170 |||||| | ||||||| |||||| |||||||| ||||||||||||| || ||||||| | Sbjct: 30997 tatatttcgagtattaaatcctttggattaaattttgtataccttca-ttggagcatgaa 30939 Query: 171 atgaaagaa 179 ||||||||| Sbjct: 30938 atgaaagaa 30930
>dbj|AK062592.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H03, full insert sequence Length = 2086 Score = 379 bits (191), Expect = e-102 Identities = 362/419 (86%) Strand = Plus / Minus Query: 234 acctagggcacgtgcactgatatcgaaacagggttcgacaactctccactgccaaagctc 293 ||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 1750 acctagggcacctgcactgatatcgaaatcgggtttgacaattctccactgccaaagctc 1691 Query: 294 gcagcacgcctcaatgagctgttacctaccaaagaatgatcaaccgccctcaagctagtc 353 ||||||||||| |||| | |||| |||||||| ||| ||||||| | |||| | || Sbjct: 1690 gcagcacgccttaatgtgttgttccctaccaatgaacgatcaacgactgtcaatgtgctc 1631 Query: 354 cctagcgacattgctgacggcatttggcttctttggcacatcttgacgatcaagcttgct 413 ||||| | ||||||||| |||||||||||||| |||||||||||||| |||| ||||||| Sbjct: 1630 cctagtgccattgctgatggcatttggcttctctggcacatcttgacaatcaggcttgct 1571 Query: 414 ttcttcttggcgcgctttgttccagtgagcatgatgttctgtattacagtattcaacccc 473 ||||||||||||||||||||||| |||| ||||| |||||||||| || |||||||| Sbjct: 1570 ttcttcttggcgcgctttgttccgttgagggtgatggtctgtattactgtgttcaaccct 1511 Query: 474 ggaatctttgctactctccgcaccaatgttgagccaccacgacgacatatctcgtataga 533 |||||||||||||||||| ||||||| | ||||| || |||||||| ||||| |||| | Sbjct: 1510 ggaatctttgctactctctgcaccaaagcagagccgccccgacgacaaatctcatataaa 1451 Query: 534 gcggacactgcattctccttgccctttggagttccccgcctcattaatccaacgaggcta 593 || || |||||||| ||||| || |||||||||||||||| |||||| ||||| |||||| Sbjct: 1450 gctgagactgcattttccttaccttttggagttccccgccgcattaacccaacaaggcta 1391 Query: 594 ctgatcacagtttcagagctcccaacatgatgcacaacagaaggctgcttcatcagcag 652 |||||||||||||||||||||||||| ||||||| | || || |||||||||||||| Sbjct: 1390 gtgatcacagtttcagagctcccaacaagatgcacgatggatggttgcttcatcagcag 1332 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 111 tatattgcaagtattagttcctttagattaaatgttgtataccttcattttgagcatgca 170 |||||| | ||||||| |||||| |||||||| ||||||||||||| || ||||||| | Sbjct: 1877 tatatttcgagtattaaatcctttggattaaattttgtataccttca-ttggagcatgaa 1819 Query: 171 atgaaagaa 179 ||||||||| Sbjct: 1818 atgaaagaa 1810
>ref|NM_100781.3| Arabidopsis thaliana ATPase/ calmodulin binding AT1G09100 mRNA, complete cds Length = 1474 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1314 tcaagcttgctttcttcttggc 1293
>ref|NM_111426.2| Arabidopsis thaliana RPT5A; ATPase/ calmodulin binding AT3G05530 (RPT5A) mRNA, complete cds Length = 1621 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1369 tcaagcttgctttcttcttggc 1348
>gb|DQ226970.1| Boechera divaricarpa isolate AD-26SProt mRNA sequence Length = 501 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 72 tcaagcttgctttcttcttggc 93
>gb|DQ226751.1| Boechera divaricarpa isolate SLW-A-E11 mRNA sequence Length = 501 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 72 tcaagcttgctttcttcttggc 93
>gb|AC009606.4|ATAC009606 Arabidopsis thaliana chromosome III BAC F22F7 genomic sequence, complete sequence Length = 91924 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 14864 tcaagcttgctttcttcttggc 14885
>gb|BT000140.1| Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT5a (At3g05530) mRNA, complete cds Length = 1351 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1261 tcaagcttgctttcttcttggc 1240
>gb|AY124813.1| Arabidopsis thaliana At1g09100/F7G19_2 mRNA, complete cds Length = 1272 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1258 tcaagcttgctttcttcttggc 1237
>gb|AY062705.1| Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT5a (At3g05530; F22F7.1) mRNA, complete cds Length = 1520 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1368 tcaagcttgctttcttcttggc 1347
>gb|AF412095.1|AF412095 Arabidopsis thaliana At1g09100/F7G19_2 mRNA, complete cds Length = 1448 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1287 tcaagcttgctttcttcttggc 1266
>gb|AY050423.1| Arabidopsis thaliana At1g09100/F7G19_2 mRNA, complete cds Length = 1415 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1287 tcaagcttgctttcttcttggc 1266
>emb|BX815750.1|CNS0AAOB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZA12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1426 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1314 tcaagcttgctttcttcttggc 1293
>emb|BX823732.1|CNS0A5FH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZC12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1467 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1336 tcaagcttgctttcttcttggc 1315
>emb|BX823750.1|CNS0A4NL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS72ZA09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1457 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1361 tcaagcttgctttcttcttggc 1340
>gb|AF123394.1|AF123394 Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT5a (RPT5a) mRNA, complete cds Length = 1390 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1297 tcaagcttgctttcttcttggc 1276
>gb|AF081573.1|AF081573 Arabidopsis thaliana 19S proteasome regulatory complex subunit S6A mRNA, complete cds Length = 1275 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1261 tcaagcttgctttcttcttggc 1240
>gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 110514 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 6499 tcaagcttgctttcttcttggc 6478
>dbj|D88663.1| Brassica campestris mRNA for Tat binding protein 1, complete cds Length = 1433 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 1320 tcaagcttgctttcttcttggc 1299
>dbj|D78490.1| Brassica rapa mRNA for human immunodeficiency virus Tat binding protein 1, partial cds Length = 308 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 403 tcaagcttgctttcttcttggc 424 |||||||||||||||||||||| Sbjct: 195 tcaagcttgctttcttcttggc 174
>emb|BX255906.7| Zebrafish DNA sequence from clone DKEY-255I1 in linkage group 5, complete sequence Length = 151863 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 tcgcagcacgcctcaatgagc 312 ||||||||||||||||||||| Sbjct: 117572 tcgcagcacgcctcaatgagc 117552
>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE Length = 210117 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 attagttcctttagattaaat 143 ||||||||||||||||||||| Sbjct: 154453 attagttcctttagattaaat 154473
>gb|DQ504427.1| Homo sapiens DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae) (DCLRE1C) gene, complete cds Length = 50007 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 atacttcagttatccacatt 78 |||||||||||||||||||| Sbjct: 11081 atacttcagttatccacatt 11100
>gb|AC124371.2| Mus musculus BAC clone RP24-556P1 from chromosome 8, complete sequence Length = 158228 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 80 cccatacacagnacacatgcaca 102 ||||||||||| ||||||||||| Sbjct: 30952 cccatacacagcacacatgcaca 30974
>gb|AC127281.3| Mus musculus BAC clone RP24-273C15 from chromosome 13, complete sequence Length = 154576 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 aaatggnaatatcaagctgaagt 38 |||||| |||||||||||||||| Sbjct: 88729 aaatggaaatatcaagctgaagt 88751
>emb|AL021579.1|HS598F2 Human DNA sequence from clone RP4-598F2 on chromosome 1q23.1-24.3 Contains part of the gene for HBxAg transactivated protein 2 (XTP2), complete sequence Length = 99886 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 caacagaaggctgcttcatc 647 |||||||||||||||||||| Sbjct: 69507 caacagaaggctgcttcatc 69488
>emb|AL360083.27| Human DNA sequence from clone RP11-2K17 on chromosome 10 Contains the 3' end of the gene for suppressor of variegation 3-9 (Drosophila) homolog 2; hypothetical protein FLJ23414 (SUV39H2)(FLJ23414), the DCLRE1C gene for DNA cross-link repair 1C (PSO2 homolog, S.cerevisiae) (SCIDA, SNM1C, ARTEMIS, RS-SCID,DCLREC1C, FLJ11360), the gene for a novel protein similar to mouse Meig1 (Meg1)(meiosis expressed gene 1), a novel gene, a seven transmembrane receptor (Rhodopsin family) pseudogene and two CpG islands, complete sequence Length = 94963 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 atacttcagttatccacatt 78 |||||||||||||||||||| Sbjct: 45386 atacttcagttatccacatt 45367
>gb|AC074281.20| Homo sapiens X BAC RP11-66N5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137628 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 ttcagagctcccaacatgat 624 |||||||||||||||||||| Sbjct: 124251 ttcagagctcccaacatgat 124270
>emb|AL133551.13| Human DNA sequence from clone RP11-57G10 on chromosome 10 Contains a ribosomal protein L21 (RPL21) pseudogene, the gene for J-domain containing protein 1 (JDP1), a ribosomal protein L12 (RPL12) pseudogene, a novel pseudogene, the SIRT1 gene for sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae), the 3' end of the gene for a novel protein (KIAA0032) and two CpG island, complete sequence Length = 175940 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acatgtatatggattatata 61 |||||||||||||||||||| Sbjct: 146459 acatgtatatggattatata 146478
>gb|AC084365.16| Homo sapiens 12 BAC RP11-632B21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188629 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tctacatgtatatggattat 58 |||||||||||||||||||| Sbjct: 46249 tctacatgtatatggattat 46268
>gb|AC106822.3| Homo sapiens chromosome 5 clone RP11-772C9, complete sequence Length = 115988 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 caagcttgctttcttcttgg 423 |||||||||||||||||||| Sbjct: 75398 caagcttgctttcttcttgg 75417
>gb|AC099757.2| Homo sapiens chromosome 1 clone RP11-523K4, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 caacagaaggctgcttcatc 647 |||||||||||||||||||| Sbjct: 92887 caacagaaggctgcttcatc 92906
>gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, complete sequence Length = 218180 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 80 cccatacacagnacacatgcaca 102 ||||||||||| ||||||||||| Sbjct: 57720 cccatacacagcacacatgcaca 57698
>gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, complete sequence Length = 174225 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 caacagaaggctgcttcatc 647 |||||||||||||||||||| Sbjct: 81830 caacagaaggctgcttcatc 81849
>dbj|AK025521.1| Homo sapiens cDNA: FLJ21868 fis, clone HEP02432 Length = 4431 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 cggacactgcattctccttg 554 |||||||||||||||||||| Sbjct: 2450 cggacactgcattctccttg 2469
>gb|AC006142.1|AC006142 Homo sapiens PAC clone RP4-572A3, complete sequence Length = 143623 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 caagcttgctttcttcttgg 423 |||||||||||||||||||| Sbjct: 28394 caagcttgctttcttcttgg 28413
>emb|AL732421.9| Zebrafish DNA sequence from clone BUSM1-249N21 in linkage group 9, complete sequence Length = 90803 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 616 caacatgatgcacaacagaa 635 |||||||||||||||||||| Sbjct: 52834 caacatgatgcacaacagaa 52815
>gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, complete sequence Length = 242383 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 aagcttgctttcttcttggc 424 |||||||||||||||||||| Sbjct: 156310 aagcttgctttcttcttggc 156329
>gb|AC175031.2| Mus musculus BAC clone RP24-381O1 from chromosome 13, complete sequence Length = 98527 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 aaatggnaatatcaagctgaagt 38 |||||| |||||||||||||||| Sbjct: 2351 aaatggaaatatcaagctgaagt 2373
>emb|AM181609.1| Hipposideros cervinus microsatellite DNA, locus Hce15 Length = 438 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 atcaagcttgctttcttctt 421 |||||||||||||||||||| Sbjct: 332 atcaagcttgctttcttctt 313
>gb|AC145931.4| Gallus gallus BAC clone CH261-32O1 from chromosome unknown, complete sequence Length = 202356 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gaaagaacttttgaacaaaa 192 |||||||||||||||||||| Sbjct: 120966 gaaagaacttttgaacaaaa 120947
>gb|DQ278604.1| Homo sapiens sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) (SIRT1) gene, complete cds Length = 36853 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acatgtatatggattatata 61 |||||||||||||||||||| Sbjct: 15088 acatgtatatggattatata 15107 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,449,604 Number of Sequences: 3902068 Number of extensions: 5449604 Number of successful extensions: 110355 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110265 Number of HSP's gapped (non-prelim): 90 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
