Clone Name | rbasd1e04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A07, full insert sequence Length = 1335 Score = 454 bits (229), Expect = e-124 Identities = 437/505 (86%), Gaps = 1/505 (0%) Strand = Plus / Minus Query: 181 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 1099 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 1040 Query: 241 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 1039 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 980 Query: 301 tctcaaagcctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccga 360 ||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 979 tctcaaagcctggctgtttcggcatcacctcaaaataggagctatagaattcccccccaa 920 Query: 361 atccagcgcaccatgacatcccaaactctgcttcattgtgtccatagtagcatgctggat 420 ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| | Sbjct: 919 atccagcgcaccatgacataccaaactccgcttcgttgtggccatagtagcaagctgggt 860 Query: 421 ccaatattacaggatctccattagtatcggagcttatatttccactccataaatctccat 480 ||||||| ||||| || ||||||||||| || ||||| ||||||||||||| ||| |||| Sbjct: 859 ccaatataacaggttcaccattagtatcagaacttatgtttccactccatagatccccat 800 Query: 481 gaagcaggcatggttcaattacagcaccctcaaacagtggatggatattgtcaatcaatc 540 |||||| |||||| || || ||||| || ||||| |||||||| ||||| || ||||||| Sbjct: 799 gaagcaagcatggctccataacagcgccttcaaaaagtggatgcatattctcgatcaatc 740 Query: 541 gctgacctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggt 600 |||||||||| |||||||| || |||||||| || || || | |||||||| || ||| Sbjct: 739 gctgacctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattgga 680 Query: 601 atcccagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgt 660 | |||| |||||||||| || ||||||||||||||||| |||||||||||||| ||||| Sbjct: 679 agcccaatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgc 621 Query: 661 ggagtgcttccaatggtattttcaa 685 |||||||||||||| ||||| |||| Sbjct: 620 ggagtgcttccaattgtattgtcaa 596
>gb|AF354659.1| Triticum aestivum isolate GCTG/CTC2 scab resistance-linked AFLP fragment gene sequence Length = 307 Score = 218 bits (110), Expect = 2e-53 Identities = 149/162 (91%) Strand = Plus / Plus Query: 169 agagaagatgtggctatgccttgagcatccgcaggtagtcttcgattatggacatggctg 228 |||||||| | ||||| ||||| ||||||| |||||||||||||||||||||||| |||| Sbjct: 51 agagaagacgaggctacgccttcagcatccccaggtagtcttcgattatggacatagctg 110 Query: 229 acgagcggtacccagagccgaaaaggttgtagtgattcaggtagtggtagagtaaataca 288 | ||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||| Sbjct: 111 aggagcggtacccagagccaaaaaggttgtagtgattcaggtagtggtataggagataca 170 Query: 289 ggtccctccttttctcaaagcctggctgtttcggcatcacct 330 |||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 171 ggtccctcctcttctcaaagcctggctgcttcggcatcacct 212
>gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence Length = 616 Score = 216 bits (109), Expect = 7e-53 Identities = 181/205 (88%) Strand = Plus / Plus Query: 201 aggtagtcttcgattatggacatggctgacgagcggtacccagagccgaaaaggttgtag 260 ||||||||||||||||||||||| ||||| || ||||| |||||||| || || |||||| Sbjct: 89 aggtagtcttcgattatggacatagctgatgaacggtagccagagccaaagagattgtag 148 Query: 261 tgattcaggtagtggtagagtaaatacaggtccctccttttctcaaagcctggctgtttc 320 |||||||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||| Sbjct: 149 tgattcaggtagtggtagaggagatagaggtccctcctcttctcaaaccctggctgtttc 208 Query: 321 ggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatc 380 |||||||||| ||||||| ||||||| ||||| || |||||||| ||||| |||||| Sbjct: 209 ggcatcacctgaaaataggcgttgtagaagtccccaccaaatccagcacaccaggacatc 268 Query: 381 ccaaactctgcttcattgtgtccat 405 ||||||||||| || |||||||||| Sbjct: 269 ccaaactctgcctcgttgtgtccat 293 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 406 agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465 ||||||| || |||||||||||||||||||| ||||| |||| |||||||| ||||| | Sbjct: 394 agtagcaagcaggatccaatattacaggatccccattgctatcagagcttatgtttccgc 453 Query: 466 tccataaatctccatgaagcaggcatggttcaat 499 |||| | ||| |||||||||| ||| || ||||| Sbjct: 454 tccacagatcaccatgaagcaagcacggctcaat 487
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 163 bits (82), Expect = 9e-37 Identities = 133/150 (88%) Strand = Plus / Minus Query: 181 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 113058 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 112999 Query: 241 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 112998 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 112939 Query: 301 tctcaaagcctggctgtttcggcatcacct 330 |||||||||||||||||||||||||||||| Sbjct: 112938 tctcaaagcctggctgtttcggcatcacct 112909 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 406 agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465 ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| ||||||| Sbjct: 111677 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttatgtttccac 111618 Query: 466 tccataaatctccatgaagcaggcatggttcaattacagcaccctcaaacagtggatgga 525 |||||| ||| |||||||||| |||||| || || ||||| || ||||| |||||||| | Sbjct: 111617 tccatagatccccatgaagcaagcatggctccataacagcgccttcaaaaagtggatgca 111558 Query: 526 tattgtcaatcaatcgctgacct 548 |||| || ||||||||||||||| Sbjct: 111557 tattctcgatcaatcgctgacct 111535 Score = 87.7 bits (44), Expect = 4e-14 Identities = 105/124 (84%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 545 acctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggtatcc 604 |||||| |||||||| || |||||||| || || || | |||||||| || ||| | || Sbjct: 111403 acctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattggaagcc 111344 Query: 605 cagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgtggag 664 || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 111343 caatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgcggag 111285 Query: 665 tgct 668 |||| Sbjct: 111284 tgct 111281 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 327 acctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 386 ||||| |||||||| || ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 112094 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 112035 Query: 387 tctgcttcattgtgtccat 405 || ||||| ||||| |||| Sbjct: 112034 tccgcttcgttgtggccat 112016
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 163 bits (82), Expect = 9e-37 Identities = 133/150 (88%) Strand = Plus / Minus Query: 181 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 957861 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 957802 Query: 241 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 957801 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 957742 Query: 301 tctcaaagcctggctgtttcggcatcacct 330 |||||||||||||||||||||||||||||| Sbjct: 957741 tctcaaagcctggctgtttcggcatcacct 957712 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 406 agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465 ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| ||||||| Sbjct: 956480 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttatgtttccac 956421 Query: 466 tccataaatctccatgaagcaggcatggttcaattacagcaccctcaaacagtggatgga 525 |||||| ||| |||||||||| |||||| || || ||||| || ||||| |||||||| | Sbjct: 956420 tccatagatccccatgaagcaagcatggctccataacagcgccttcaaaaagtggatgca 956361 Query: 526 tattgtcaatcaatcgctgacct 548 |||| || ||||||||||||||| Sbjct: 956360 tattctcgatcaatcgctgacct 956338 Score = 87.7 bits (44), Expect = 4e-14 Identities = 105/124 (84%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 545 acctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggtatcc 604 |||||| |||||||| || |||||||| || || || | |||||||| || ||| | || Sbjct: 956206 acctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattggaagcc 956147 Query: 605 cagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgtggag 664 || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 956146 caatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgcggag 956088 Query: 665 tgct 668 |||| Sbjct: 956087 tgct 956084 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 327 acctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 386 ||||| |||||||| || ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 956897 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 956838 Query: 387 tctgcttcattgtgtccat 405 || ||||| ||||| |||| Sbjct: 956837 tccgcttcgttgtggccat 956819
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 163 bits (82), Expect = 9e-37 Identities = 133/150 (88%) Strand = Plus / Minus Query: 181 gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240 |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| |||||||||| Sbjct: 957859 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 957800 Query: 241 cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300 | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| | Sbjct: 957799 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 957740 Query: 301 tctcaaagcctggctgtttcggcatcacct 330 |||||||||||||||||||||||||||||| Sbjct: 957739 tctcaaagcctggctgtttcggcatcacct 957710 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 406 agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465 ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| ||||||| Sbjct: 956478 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttatgtttccac 956419 Query: 466 tccataaatctccatgaagcaggcatggttcaattacagcaccctcaaacagtggatgga 525 |||||| ||| |||||||||| |||||| || || ||||| || ||||| |||||||| | Sbjct: 956418 tccatagatccccatgaagcaagcatggctccataacagcgccttcaaaaagtggatgca 956359 Query: 526 tattgtcaatcaatcgctgacct 548 |||| || ||||||||||||||| Sbjct: 956358 tattctcgatcaatcgctgacct 956336 Score = 87.7 bits (44), Expect = 4e-14 Identities = 105/124 (84%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 545 acctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggtatcc 604 |||||| |||||||| || |||||||| || || || | |||||||| || ||| | || Sbjct: 956204 acctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattggaagcc 956145 Query: 605 cagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgtggag 664 || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 956144 caatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgcggag 956086 Query: 665 tgct 668 |||| Sbjct: 956085 tgct 956082 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 327 acctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 386 ||||| |||||||| || ||||| ||||| || |||||||||||||||||||| |||||| Sbjct: 956895 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 956836 Query: 387 tctgcttcattgtgtccat 405 || ||||| ||||| |||| Sbjct: 956835 tccgcttcgttgtggccat 956817
>ref|NM_115972.3| Arabidopsis thaliana kinase AT3G61080 mRNA, complete cds Length = 1219 Score = 65.9 bits (33), Expect = 2e-07 Identities = 156/197 (79%) Strand = Plus / Minus Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 996 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 937 Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaag 308 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| | Sbjct: 936 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctcatat 877 Query: 309 cctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcg 368 || | ||||| ||||| |||| |||||||| | |||||||| |||| ||||| ||| Sbjct: 876 cccgcttgttttggcattaccttgaaataggcattgtagaaagattctccaaatcctgcg 817 Query: 369 caccatgacatcccaaa 385 ||||| ||||| ||||| Sbjct: 816 caccacgacattccaaa 800
>gb|AY117356.1| Arabidopsis thaliana unknown protein (At3g61080) mRNA, complete cds Length = 1012 Score = 65.9 bits (33), Expect = 2e-07 Identities = 156/197 (79%) Strand = Plus / Minus Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 974 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 915 Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaag 308 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| | Sbjct: 914 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctcatat 855 Query: 309 cctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcg 368 || | ||||| ||||| |||| |||||||| | |||||||| |||| ||||| ||| Sbjct: 854 cccgcttgttttggcattaccttgaaataggcattgtagaaagattctccaaatcctgcg 795 Query: 369 caccatgacatcccaaa 385 ||||| ||||| ||||| Sbjct: 794 caccacgacattccaaa 778
>gb|AY070080.1| Arabidopsis thaliana unknown protein (At3g61080) mRNA, complete cds Length = 1234 Score = 65.9 bits (33), Expect = 2e-07 Identities = 156/197 (79%) Strand = Plus / Minus Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 995 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 936 Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaag 308 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| | Sbjct: 935 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctcatat 876 Query: 309 cctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcg 368 || | ||||| ||||| |||| |||||||| | |||||||| |||| ||||| ||| Sbjct: 875 cccgcttgttttggcattaccttgaaataggcattgtagaaagattctccaaatcctgcg 816 Query: 369 caccatgacatcccaaa 385 ||||| ||||| ||||| Sbjct: 815 caccacgacattccaaa 799
>gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete sequence Length = 50019 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 354 cctccgaatccagcgcaccatgacatcccaaactctgcttcattgtgtccat 405 ||||| || ||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct: 11256 cctccaaaaccagcacaccatgacattccaaattctgcttcattgtgtccat 11307 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 255 ttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaagcctggc 314 ||||| |||||||||||||| || || ||||| | || ||||| |||||||||||||| Sbjct: 10778 ttgtaatgattcaggtagtgatacagcaaatagatctctctcctcttctcaaagcctggt 10837 Query: 315 tgtttcggcatcacct 330 ||||| |||||||||| Sbjct: 10838 tgtttgggcatcacct 10853 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 621 gtaaaactcaatccagtcagcagtccaagtgttgatttgtggagt 665 ||||||||| |||||||| | ||||||||||| || |||||||| Sbjct: 12378 gtaaaactctatccagtctgatgtccaagtgtttatctgtggagt 12422
>emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome 3, BAC clone T27I15 Length = 112584 Score = 50.1 bits (25), Expect = 0.010 Identities = 94/117 (80%) Strand = Plus / Minus Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 106672 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 106613 Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 305 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 106612 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 106556
>emb|BX822693.1|CNS0A5VF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 50.1 bits (25), Expect = 0.010 Identities = 94/117 (80%) Strand = Plus / Minus Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| Sbjct: 1150 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 1091 Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 305 || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| Sbjct: 1090 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 1034
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 tcatacatgcatgccattgtgg 130 |||||||||||||||||||||| Sbjct: 186776 tcatacatgcatgccattgtgg 186755
>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project) Length = 90824 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 tcatacatgcatgccattgtgg 130 |||||||||||||||||||||| Sbjct: 49476 tcatacatgcatgccattgtgg 49455
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 tgagcatccgcaggtagtcttc 211 |||||||||||||||||||||| Sbjct: 26545066 tgagcatccgcaggtagtcttc 26545087
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 tgagcatccgcaggtagtcttc 211 |||||||||||||||||||||| Sbjct: 26473235 tgagcatccgcaggtagtcttc 26473256
>emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727_H11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 85710 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 tgagcatccgcaggtagtcttc 211 |||||||||||||||||||||| Sbjct: 15071 tgagcatccgcaggtagtcttc 15092
>gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, complete sequence Length = 136535 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 417 ggatccaatattacaggatctccat 441 |||||||| |||||||||||||||| Sbjct: 133270 ggatccaaaattacaggatctccat 133294
>gb|AY432028.1| Aedes aegypti ASAP ID: 34461 unknown mRNA sequence Length = 365 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 gagtaaatacaggtccctccttttc 302 |||||||||| |||||||||||||| Sbjct: 167 gagtaaatacgggtccctccttttc 143
>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence Length = 224985 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 417 ggatccaatattacaggatctccat 441 |||||||| |||||||||||||||| Sbjct: 210564 ggatccaaaattacaggatctccat 210540
>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence Length = 202146 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aaagagaagatgtggctatg 186 |||||||||||||||||||| Sbjct: 25783 aaagagaagatgtggctatg 25802
>gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, complete sequence Length = 223764 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aagggtttcactgtgaatcc 72 |||||||||||||||||||| Sbjct: 216757 aagggtttcactgtgaatcc 216776
>gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, complete sequence Length = 165330 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 gatccaatattacaggatctccat 441 ||||||| |||||||||||||||| Sbjct: 12820 gatccaaaattacaggatctccat 12797
>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence Length = 198590 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aagggtttcactgtgaatcc 72 |||||||||||||||||||| Sbjct: 137822 aagggtttcactgtgaatcc 137803
>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence Length = 187677 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 gatccaatattacaggatctccat 441 ||||||| |||||||||||||||| Sbjct: 53599 gatccaaaattacaggatctccat 53576
>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence Length = 206003 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gatccaatattacaggatctccat 441 ||||||| |||||||||||||||| Sbjct: 7294 gatccaaaattacaggatctccat 7317
>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete sequence Length = 190724 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gatccaatattacaggatctccat 441 ||||||| |||||||||||||||| Sbjct: 103542 gatccaaaattacaggatctccat 103565
>gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, complete sequence Length = 162957 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gggagaagcacaggtgggtg 149 |||||||||||||||||||| Sbjct: 77464 gggagaagcacaggtgggtg 77483
>gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, complete sequence Length = 104776 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 aattccctctcctcaaagag 172 |||||||||||||||||||| Sbjct: 20301 aattccctctcctcaaagag 20320
>gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, complete sequence Length = 187084 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 aattccctctcctcaaagag 172 |||||||||||||||||||| Sbjct: 53348 aattccctctcctcaaagag 53329
>emb|CR352834.1| Gallus gallus finished cDNA, clone ChEST119c6 Length = 1837 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 acatcccaaactctgcttca 395 |||||||||||||||||||| Sbjct: 1008 acatcccaaactctgcttca 989
>gb|AC069418.15| Homo sapiens 3 BAC RP11-464F3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147000 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 acctttttcatatatagctg 564 |||||||||||||||||||| Sbjct: 100336 acctttttcatatatagctg 100355
>gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome 6, complete sequence Length = 188358 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 aaagagaagatgtggctatg 186 |||||||||||||||||||| Sbjct: 121385 aaagagaagatgtggctatg 121404
>gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromosome ul, complete sequence Length = 213261 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 acatcccaaactctgcttca 395 |||||||||||||||||||| Sbjct: 13449 acatcccaaactctgcttca 13468
>emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on chromosome 11, complete sequence Length = 118444 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 gatccaatattacaggatctccat 441 ||||||| |||||||||||||||| Sbjct: 50349 gatccaaaattacaggatctccat 50326 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,542,664 Number of Sequences: 3902068 Number of extensions: 5542664 Number of successful extensions: 104778 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104614 Number of HSP's gapped (non-prelim): 163 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)