ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clon... 454 e-124
2gb|AF354659.1| Triticum aestivum isolate GCTG/CTC2 scab resistan... 218 2e-53
3gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence 216 7e-53
4gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 163 9e-37
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 163 9e-37
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
7ref|NM_115972.3| Arabidopsis thaliana kinase AT3G61080 mRNA, com... 66 2e-07
8gb|AY117356.1| Arabidopsis thaliana unknown protein (At3g61080) ... 66 2e-07
9gb|AY070080.1| Arabidopsis thaliana unknown protein (At3g61080) ... 66 2e-07
10gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete se... 64 6e-07
11emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome 3, B... 50 0.010
12emb|BX822693.1|CNS0A5VF Arabidopsis thaliana Full-length cDNA Co... 50 0.010
13emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, ... 44 0.60
14emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, B... 44 0.60
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
16gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
17emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727... 44 0.60
18gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, co... 42 2.4
19gb|AY432028.1| Aedes aegypti ASAP ID: 34461 unknown mRNA sequence 42 2.4
20gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, comp... 42 2.4
21gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, co... 40 9.4
22gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, co... 40 9.4
23gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, comp... 40 9.4
24gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, com... 40 9.4
25gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, comp... 40 9.4
26gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome... 40 9.4
27gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosom... 40 9.4
28gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, comp... 40 9.4
29gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, comp... 40 9.4
30gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, compl... 40 9.4
31emb|CR352834.1| Gallus gallus finished cDNA, clone ChEST119c6 40 9.4
32gb|AC069418.15| Homo sapiens 3 BAC RP11-464F3 (Roswell Park Canc... 40 9.4
33gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome... 40 9.4
34gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromoso... 40 9.4
35emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on ch... 40 9.4

>dbj|AK066948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A07, full
            insert sequence
          Length = 1335

 Score =  454 bits (229), Expect = e-124
 Identities = 437/505 (86%), Gaps = 1/505 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240
            |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 1099 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 1040

                                                                        
Query: 241  cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300
            | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| |
Sbjct: 1039 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 980

                                                                        
Query: 301  tctcaaagcctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccga 360
            ||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || |
Sbjct: 979  tctcaaagcctggctgtttcggcatcacctcaaaataggagctatagaattcccccccaa 920

                                                                        
Query: 361  atccagcgcaccatgacatcccaaactctgcttcattgtgtccatagtagcatgctggat 420
            ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||| |
Sbjct: 919  atccagcgcaccatgacataccaaactccgcttcgttgtggccatagtagcaagctgggt 860

                                                                        
Query: 421  ccaatattacaggatctccattagtatcggagcttatatttccactccataaatctccat 480
            ||||||| ||||| || ||||||||||| || ||||| ||||||||||||| ||| ||||
Sbjct: 859  ccaatataacaggttcaccattagtatcagaacttatgtttccactccatagatccccat 800

                                                                        
Query: 481  gaagcaggcatggttcaattacagcaccctcaaacagtggatggatattgtcaatcaatc 540
            |||||| |||||| || || ||||| || ||||| |||||||| ||||| || |||||||
Sbjct: 799  gaagcaagcatggctccataacagcgccttcaaaaagtggatgcatattctcgatcaatc 740

                                                                        
Query: 541  gctgacctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggt 600
            |||||||||| |||||||| || |||||||| || || || | ||||||||  || ||| 
Sbjct: 739  gctgacctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattgga 680

                                                                        
Query: 601  atcccagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgt 660
            | |||| |||||||||| || ||||||||||||||||| |||||||||||||| ||||| 
Sbjct: 679  agcccaatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgc 621

                                     
Query: 661  ggagtgcttccaatggtattttcaa 685
            |||||||||||||| ||||| ||||
Sbjct: 620  ggagtgcttccaattgtattgtcaa 596



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>gb|AF354659.1| Triticum aestivum isolate GCTG/CTC2 scab resistance-linked AFLP
           fragment gene sequence
          Length = 307

 Score =  218 bits (110), Expect = 2e-53
 Identities = 149/162 (91%)
 Strand = Plus / Plus

                                                                       
Query: 169 agagaagatgtggctatgccttgagcatccgcaggtagtcttcgattatggacatggctg 228
           |||||||| | ||||| ||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct: 51  agagaagacgaggctacgccttcagcatccccaggtagtcttcgattatggacatagctg 110

                                                                       
Query: 229 acgagcggtacccagagccgaaaaggttgtagtgattcaggtagtggtagagtaaataca 288
           | ||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||
Sbjct: 111 aggagcggtacccagagccaaaaaggttgtagtgattcaggtagtggtataggagataca 170

                                                     
Query: 289 ggtccctccttttctcaaagcctggctgtttcggcatcacct 330
           |||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 171 ggtccctcctcttctcaaagcctggctgcttcggcatcacct 212



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>gb|AY110314.1| Zea mays CL24410_-1 mRNA sequence
          Length = 616

 Score =  216 bits (109), Expect = 7e-53
 Identities = 181/205 (88%)
 Strand = Plus / Plus

                                                                       
Query: 201 aggtagtcttcgattatggacatggctgacgagcggtacccagagccgaaaaggttgtag 260
           ||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||||
Sbjct: 89  aggtagtcttcgattatggacatagctgatgaacggtagccagagccaaagagattgtag 148

                                                                       
Query: 261 tgattcaggtagtggtagagtaaatacaggtccctccttttctcaaagcctggctgtttc 320
           |||||||||||||||||||| | ||| ||||||||||| |||||||| ||||||||||||
Sbjct: 149 tgattcaggtagtggtagaggagatagaggtccctcctcttctcaaaccctggctgtttc 208

                                                                       
Query: 321 ggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatc 380
           ||||||||||  |||||||   ||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 209 ggcatcacctgaaaataggcgttgtagaagtccccaccaaatccagcacaccaggacatc 268

                                    
Query: 381 ccaaactctgcttcattgtgtccat 405
           ||||||||||| || ||||||||||
Sbjct: 269 ccaaactctgcctcgttgtgtccat 293



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                       
Query: 406 agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465
           ||||||| || |||||||||||||||||||| |||||  |||| |||||||| ||||| |
Sbjct: 394 agtagcaagcaggatccaatattacaggatccccattgctatcagagcttatgtttccgc 453

                                             
Query: 466 tccataaatctccatgaagcaggcatggttcaat 499
           |||| | ||| |||||||||| ||| || |||||
Sbjct: 454 tccacagatcaccatgaagcaagcacggctcaat 487



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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13,
              complete sequence
          Length = 148011

 Score =  163 bits (82), Expect = 9e-37
 Identities = 133/150 (88%)
 Strand = Plus / Minus

                                                                          
Query: 181    gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240
              |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 113058 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 112999

                                                                          
Query: 241    cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300
              | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| |
Sbjct: 112998 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 112939

                                            
Query: 301    tctcaaagcctggctgtttcggcatcacct 330
              ||||||||||||||||||||||||||||||
Sbjct: 112938 tctcaaagcctggctgtttcggcatcacct 112909



 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                          
Query: 406    agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465
              ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| |||||||
Sbjct: 111677 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttatgtttccac 111618

                                                                          
Query: 466    tccataaatctccatgaagcaggcatggttcaattacagcaccctcaaacagtggatgga 525
              |||||| ||| |||||||||| |||||| || || ||||| || ||||| |||||||| |
Sbjct: 111617 tccatagatccccatgaagcaagcatggctccataacagcgccttcaaaaagtggatgca 111558

                                     
Query: 526    tattgtcaatcaatcgctgacct 548
              |||| || |||||||||||||||
Sbjct: 111557 tattctcgatcaatcgctgacct 111535



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 105/124 (84%), Gaps = 1/124 (0%)
 Strand = Plus / Minus

                                                                          
Query: 545    acctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggtatcc 604
              |||||| |||||||| || |||||||| || || || | ||||||||  || ||| | ||
Sbjct: 111403 acctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattggaagcc 111344

                                                                          
Query: 605    cagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgtggag 664
              || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 111343 caatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgcggag 111285

                  
Query: 665    tgct 668
              ||||
Sbjct: 111284 tgct 111281



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                          
Query: 327    acctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 386
              ||||| |||||||| || ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct: 112094 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 112035

                                 
Query: 387    tctgcttcattgtgtccat 405
              || ||||| ||||| ||||
Sbjct: 112034 tccgcttcgttgtggccat 112016



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  163 bits (82), Expect = 9e-37
 Identities = 133/150 (88%)
 Strand = Plus / Minus

                                                                          
Query: 181    gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240
              |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 957861 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 957802

                                                                          
Query: 241    cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300
              | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| |
Sbjct: 957801 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 957742

                                            
Query: 301    tctcaaagcctggctgtttcggcatcacct 330
              ||||||||||||||||||||||||||||||
Sbjct: 957741 tctcaaagcctggctgtttcggcatcacct 957712



 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                          
Query: 406    agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465
              ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| |||||||
Sbjct: 956480 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttatgtttccac 956421

                                                                          
Query: 466    tccataaatctccatgaagcaggcatggttcaattacagcaccctcaaacagtggatgga 525
              |||||| ||| |||||||||| |||||| || || ||||| || ||||| |||||||| |
Sbjct: 956420 tccatagatccccatgaagcaagcatggctccataacagcgccttcaaaaagtggatgca 956361

                                     
Query: 526    tattgtcaatcaatcgctgacct 548
              |||| || |||||||||||||||
Sbjct: 956360 tattctcgatcaatcgctgacct 956338



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 105/124 (84%), Gaps = 1/124 (0%)
 Strand = Plus / Minus

                                                                          
Query: 545    acctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggtatcc 604
              |||||| |||||||| || |||||||| || || || | ||||||||  || ||| | ||
Sbjct: 956206 acctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattggaagcc 956147

                                                                          
Query: 605    cagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgtggag 664
              || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 956146 caatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgcggag 956088

                  
Query: 665    tgct 668
              ||||
Sbjct: 956087 tgct 956084



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                          
Query: 327    acctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 386
              ||||| |||||||| || ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct: 956897 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 956838

                                 
Query: 387    tctgcttcattgtgtccat 405
              || ||||| ||||| ||||
Sbjct: 956837 tccgcttcgttgtggccat 956819



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  163 bits (82), Expect = 9e-37
 Identities = 133/150 (88%)
 Strand = Plus / Minus

                                                                          
Query: 181    gctatgccttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacc 240
              |||| ||||| ||||||| || |||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 957859 gctaagccttcagcatcctcaagtagtcatcgataatggacatagctgatgagcggtacc 957800

                                                                          
Query: 241    cagagccgaaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttt 300
              | ||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||||| |
Sbjct: 957799 cggagccaaaaagattgtagtggttcagatagtggtacagaagatacaggtccctcctct 957740

                                            
Query: 301    tctcaaagcctggctgtttcggcatcacct 330
              ||||||||||||||||||||||||||||||
Sbjct: 957739 tctcaaagcctggctgtttcggcatcacct 957710



 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                          
Query: 406    agtagcatgctggatccaatattacaggatctccattagtatcggagcttatatttccac 465
              ||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| |||||||
Sbjct: 956478 agtagcaagctgggtccaatataacaggttcaccattagtatcagaacttatgtttccac 956419

                                                                          
Query: 466    tccataaatctccatgaagcaggcatggttcaattacagcaccctcaaacagtggatgga 525
              |||||| ||| |||||||||| |||||| || || ||||| || ||||| |||||||| |
Sbjct: 956418 tccatagatccccatgaagcaagcatggctccataacagcgccttcaaaaagtggatgca 956359

                                     
Query: 526    tattgtcaatcaatcgctgacct 548
              |||| || |||||||||||||||
Sbjct: 956358 tattctcgatcaatcgctgacct 956336



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 105/124 (84%), Gaps = 1/124 (0%)
 Strand = Plus / Minus

                                                                          
Query: 545    acctttttcatatatagctgaatctccgaaccgctgtgatatcaacttcaactggtatcc 604
              |||||| |||||||| || |||||||| || || || | ||||||||  || ||| | ||
Sbjct: 956204 acctttatcatatattgccgaatctccaaatcgttgggttatcaactctaattggaagcc 956145

                                                                          
Query: 605    cagtctatgctttcgagtaaaactcaatccagtcagcagtccaagtgttgatttgtggag 664
              || |||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 956144 caatctatgcttt-gaataaaactcaatccagtcggcagtccaagtgttaatttgcggag 956086

                  
Query: 665    tgct 668
              ||||
Sbjct: 956085 tgct 956082



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                          
Query: 327    acctcgaaataggaactgtagaaatcccctccgaatccagcgcaccatgacatcccaaac 386
              ||||| |||||||| || ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct: 956895 acctcaaaataggagctatagaattcccccccaaatccagcgcaccatgacataccaaac 956836

                                 
Query: 387    tctgcttcattgtgtccat 405
              || ||||| ||||| ||||
Sbjct: 956835 tccgcttcgttgtggccat 956817



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>ref|NM_115972.3| Arabidopsis thaliana kinase AT3G61080 mRNA, complete cds
          Length = 1219

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 156/197 (79%)
 Strand = Plus / Minus

                                                                       
Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248
           ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| 
Sbjct: 996 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 937

                                                                       
Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaag 308
           || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| | 
Sbjct: 936 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctcatat 877

                                                                       
Query: 309 cctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcg 368
           || |  ||||| ||||| |||| |||||||| | ||||||||    |||| ||||| |||
Sbjct: 876 cccgcttgttttggcattaccttgaaataggcattgtagaaagattctccaaatcctgcg 817

                            
Query: 369 caccatgacatcccaaa 385
           ||||| ||||| |||||
Sbjct: 816 caccacgacattccaaa 800



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>gb|AY117356.1| Arabidopsis thaliana unknown protein (At3g61080) mRNA, complete cds
          Length = 1012

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 156/197 (79%)
 Strand = Plus / Minus

                                                                       
Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248
           ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| 
Sbjct: 974 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 915

                                                                       
Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaag 308
           || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| | 
Sbjct: 914 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctcatat 855

                                                                       
Query: 309 cctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcg 368
           || |  ||||| ||||| |||| |||||||| | ||||||||    |||| ||||| |||
Sbjct: 854 cccgcttgttttggcattaccttgaaataggcattgtagaaagattctccaaatcctgcg 795

                            
Query: 369 caccatgacatcccaaa 385
           ||||| ||||| |||||
Sbjct: 794 caccacgacattccaaa 778



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>gb|AY070080.1| Arabidopsis thaliana unknown protein (At3g61080) mRNA, complete cds
          Length = 1234

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 156/197 (79%)
 Strand = Plus / Minus

                                                                       
Query: 189 ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248
           ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| 
Sbjct: 995 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 936

                                                                       
Query: 249 aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaag 308
           || ||||| || || |||| ||| || ||||| |||||||| |||||||| |||||| | 
Sbjct: 935 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctcatat 876

                                                                       
Query: 309 cctggctgtttcggcatcacctcgaaataggaactgtagaaatcccctccgaatccagcg 368
           || |  ||||| ||||| |||| |||||||| | ||||||||    |||| ||||| |||
Sbjct: 875 cccgcttgttttggcattaccttgaaataggcattgtagaaagattctccaaatcctgcg 816

                            
Query: 369 caccatgacatcccaaa 385
           ||||| ||||| |||||
Sbjct: 815 caccacgacattccaaa 799



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>gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete sequence
          Length = 50019

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 354   cctccgaatccagcgcaccatgacatcccaaactctgcttcattgtgtccat 405
             ||||| || ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 11256 cctccaaaaccagcacaccatgacattccaaattctgcttcattgtgtccat 11307



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                         
Query: 255   ttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctcaaagcctggc 314
             ||||| |||||||||||||| || || ||||| |  || ||||| |||||||||||||| 
Sbjct: 10778 ttgtaatgattcaggtagtgatacagcaaatagatctctctcctcttctcaaagcctggt 10837

                             
Query: 315   tgtttcggcatcacct 330
             ||||| ||||||||||
Sbjct: 10838 tgtttgggcatcacct 10853



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 621   gtaaaactcaatccagtcagcagtccaagtgttgatttgtggagt 665
             ||||||||| |||||||| |  ||||||||||| || ||||||||
Sbjct: 12378 gtaaaactctatccagtctgatgtccaagtgtttatctgtggagt 12422



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>emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome 3, BAC clone T27I15
          Length = 112584

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                          
Query: 189    ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248
              ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| 
Sbjct: 106672 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 106613

                                                                       
Query: 249    aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 305
              || ||||| || || |||| ||| || ||||| |||||||| |||||||| ||||||
Sbjct: 106612 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 106556



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>emb|BX822693.1|CNS0A5VF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB58ZF12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1340

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 189  ttgagcatccgcaggtagtcttcgattatggacatggctgacgagcggtacccagagccg 248
            ||||||||||| || || || ||||| || ||||| || || || ||||| || ||||| 
Sbjct: 1150 ttgagcatccgtagataatcatcgatgattgacatcgcagatgatcggtagcccgagcca 1091

                                                                     
Query: 249  aaaaggttgtagtgattcaggtagtggtagagtaaatacaggtccctccttttctca 305
            || ||||| || || |||| ||| || ||||| |||||||| |||||||| ||||||
Sbjct: 1090 aacaggttataatggttcaagtaatgatagagcaaatacagatccctcctcttctca 1034



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>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32
          Length = 198788

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 109    tcatacatgcatgccattgtgg 130
              ||||||||||||||||||||||
Sbjct: 186776 tcatacatgcatgccattgtgg 186755



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>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project)
          Length = 90824

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 109   tcatacatgcatgccattgtgg 130
             ||||||||||||||||||||||
Sbjct: 49476 tcatacatgcatgccattgtgg 49455



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 190      tgagcatccgcaggtagtcttc 211
                ||||||||||||||||||||||
Sbjct: 26545066 tgagcatccgcaggtagtcttc 26545087



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 190      tgagcatccgcaggtagtcttc 211
                ||||||||||||||||||||||
Sbjct: 26473235 tgagcatccgcaggtagtcttc 26473256



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>emb|AL713945.5|CNS07YPO Oryza sativa chromosome 12, . BAC OJ1727_H11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 85710

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 190   tgagcatccgcaggtagtcttc 211
             ||||||||||||||||||||||
Sbjct: 15071 tgagcatccgcaggtagtcttc 15092



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>gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, complete sequence
          Length = 136535

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 417    ggatccaatattacaggatctccat 441
              |||||||| ||||||||||||||||
Sbjct: 133270 ggatccaaaattacaggatctccat 133294



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>gb|AY432028.1| Aedes aegypti ASAP ID: 34461 unknown mRNA sequence
          Length = 365

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 278 gagtaaatacaggtccctccttttc 302
           |||||||||| ||||||||||||||
Sbjct: 167 gagtaaatacgggtccctccttttc 143



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>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence
          Length = 224985

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 417    ggatccaatattacaggatctccat 441
              |||||||| ||||||||||||||||
Sbjct: 210564 ggatccaaaattacaggatctccat 210540



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>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence
          Length = 202146

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   aaagagaagatgtggctatg 186
             ||||||||||||||||||||
Sbjct: 25783 aaagagaagatgtggctatg 25802



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>gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, complete sequence
          Length = 223764

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     aagggtttcactgtgaatcc 72
              ||||||||||||||||||||
Sbjct: 216757 aagggtttcactgtgaatcc 216776



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>gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, complete sequence
          Length = 165330

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   gatccaatattacaggatctccat 441
             ||||||| ||||||||||||||||
Sbjct: 12820 gatccaaaattacaggatctccat 12797



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>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence
          Length = 198590

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aagggtttcactgtgaatcc 72
              ||||||||||||||||||||
Sbjct: 137822 aagggtttcactgtgaatcc 137803



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>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence
          Length = 187677

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   gatccaatattacaggatctccat 441
             ||||||| ||||||||||||||||
Sbjct: 53599 gatccaaaattacaggatctccat 53576



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>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete
            sequence
          Length = 206003

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 418  gatccaatattacaggatctccat 441
            ||||||| ||||||||||||||||
Sbjct: 7294 gatccaaaattacaggatctccat 7317



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>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete sequence
          Length = 190724

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 418    gatccaatattacaggatctccat 441
              ||||||| ||||||||||||||||
Sbjct: 103542 gatccaaaattacaggatctccat 103565



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>gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, complete sequence
          Length = 162957

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   gggagaagcacaggtgggtg 149
             ||||||||||||||||||||
Sbjct: 77464 gggagaagcacaggtgggtg 77483



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>gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, complete sequence
          Length = 104776

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   aattccctctcctcaaagag 172
             ||||||||||||||||||||
Sbjct: 20301 aattccctctcctcaaagag 20320



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>gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, complete sequence
          Length = 187084

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   aattccctctcctcaaagag 172
             ||||||||||||||||||||
Sbjct: 53348 aattccctctcctcaaagag 53329



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>emb|CR352834.1| Gallus gallus finished cDNA, clone ChEST119c6
          Length = 1837

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  acatcccaaactctgcttca 395
            ||||||||||||||||||||
Sbjct: 1008 acatcccaaactctgcttca 989



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>gb|AC069418.15| Homo sapiens 3 BAC RP11-464F3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    acctttttcatatatagctg 564
              ||||||||||||||||||||
Sbjct: 100336 acctttttcatatatagctg 100355



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>gb|AC174597.2| Mus musculus BAC clone RP24-418F6 from chromosome 6, complete sequence
          Length = 188358

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    aaagagaagatgtggctatg 186
              ||||||||||||||||||||
Sbjct: 121385 aaagagaagatgtggctatg 121404



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>gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromosome ul, complete
             sequence
          Length = 213261

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   acatcccaaactctgcttca 395
             ||||||||||||||||||||
Sbjct: 13449 acatcccaaactctgcttca 13468



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>emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on chromosome 11, complete
             sequence
          Length = 118444

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   gatccaatattacaggatctccat 441
             ||||||| ||||||||||||||||
Sbjct: 50349 gatccaaaattacaggatctccat 50326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,542,664
Number of Sequences: 3902068
Number of extensions: 5542664
Number of successful extensions: 104778
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104614
Number of HSP's gapped (non-prelim): 163
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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