ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT21_ORYSA (P94029) Metallothionein-like protein type 2 36 0.073
2SOX14_DROME (P40656) Putative transcription factor SOX-14 30 6.8
3HYPD_RALEU (P31903) Hydrogenase expression/formation protein hypD 29 8.9

>MT21_ORYSA (P94029) Metallothionein-like protein type 2|
          Length = 82

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = -3

Query: 501 MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 388
           MYP M E V+TT    Q ++MGVA SKG+    EA AA
Sbjct: 25  MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58



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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 302 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 481
           P+P  DST             PH  PPFS + +    P P    TP  +  +  A +  P
Sbjct: 42  PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88

Query: 482 SSI 490
           +++
Sbjct: 89  AAV 91



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>HYPD_RALEU (P31903) Hydrogenase expression/formation protein hypD|
          Length = 379

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 110 VLCCHVLXPTALVXVPXCAXPRXYXT 33
           VLCCHVL P+A+  +      R Y T
Sbjct: 167 VLCCHVLTPSAITHILESPEVRDYGT 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,291,298
Number of Sequences: 219361
Number of extensions: 1037365
Number of successful extensions: 2742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2741
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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