Clone Name | rbasd1e02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MT21_ORYSA (P94029) Metallothionein-like protein type 2 | 36 | 0.073 | 2 | SOX14_DROME (P40656) Putative transcription factor SOX-14 | 30 | 6.8 | 3 | HYPD_RALEU (P31903) Hydrogenase expression/formation protein hypD | 29 | 8.9 |
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>MT21_ORYSA (P94029) Metallothionein-like protein type 2| Length = 82 Score = 36.2 bits (82), Expect = 0.073 Identities = 20/38 (52%), Positives = 24/38 (63%) Frame = -3 Query: 501 MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 388 MYP M E V+TT Q ++MGVA SKG+ EA AA Sbjct: 25 MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 29.6 bits (65), Expect = 6.8 Identities = 17/63 (26%), Positives = 26/63 (41%) Frame = +2 Query: 302 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 481 P+P DST PH PPFS + + P P TP + + A + P Sbjct: 42 PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88 Query: 482 SSI 490 +++ Sbjct: 89 AAV 91
>HYPD_RALEU (P31903) Hydrogenase expression/formation protein hypD| Length = 379 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 110 VLCCHVLXPTALVXVPXCAXPRXYXT 33 VLCCHVL P+A+ + R Y T Sbjct: 167 VLCCHVLTPSAITHILESPEVRDYGT 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,291,298 Number of Sequences: 219361 Number of extensions: 1037365 Number of successful extensions: 2742 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2741 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)