Clone Name | rbasd1d24 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | emb|X94352.1|TACATAGEN T.aestivum mRNA for catalase | 96 | 2e-17 | 2 | gb|U20777.1|HVU20777 Hordeum vulgare catalase (Cat1) mRNA, compl... | 96 | 2e-17 | 3 | gb|AF021938.1|AF021938 Hordeum vulgare catalase 1 (CAT1) gene, p... | 64 | 8e-08 | 4 | gb|DQ078758.1| Oryza sativa (indica cultivar-group) catalase mRN... | 58 | 5e-06 |
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>emb|X94352.1|TACATAGEN T.aestivum mRNA for catalase Length = 1869 Score = 95.6 bits (48), Expect = 2e-17 Identities = 82/99 (82%) Strand = Plus / Minus Query: 1 aacccaccgntgnaggaaacggtnttncctggcangntcnaangaccgatatntntcacc 60 ||||||||| || |||||||||| || ||||||| | || || ||||||||| | ||||| Sbjct: 1470 aacccaccgctggaggaaacggtcttgcctggcagggtcgaaggaccgatatctctcacc 1411 Query: 61 annctgnttgaaattgttntncttgtnnataatgcactt 99 | ||| ||||||||||| | ||||| ||||||||||| Sbjct: 1410 agcctgcttgaaattgttctccttgtcgataatgcactt 1372
>gb|U20777.1|HVU20777 Hordeum vulgare catalase (Cat1) mRNA, complete cds Length = 1879 Score = 95.6 bits (48), Expect = 2e-17 Identities = 82/99 (82%) Strand = Plus / Minus Query: 1 aacccaccgntgnaggaaacggtnttncctggcangntcnaangaccgatatntntcacc 60 ||||||||| || |||||||||| || ||||||| | || || ||||||||| | ||||| Sbjct: 1429 aacccaccgctggaggaaacggtcttgcctggcagggtcgaaggaccgatatctctcacc 1370 Query: 61 annctgnttgaaattgttntncttgtnnataatgcactt 99 | ||| ||||||||||| | ||||| ||||||||||| Sbjct: 1369 agcctgcttgaaattgttctccttgtcgataatgcactt 1331
>gb|AF021938.1|AF021938 Hordeum vulgare catalase 1 (CAT1) gene, partial cds Length = 2130 Score = 63.9 bits (32), Expect = 8e-08 Identities = 58/71 (81%) Strand = Plus / Minus Query: 28 cctggcangntcnaangaccgatatntntcaccannctgnttgaaattgttntncttgtn 87 ||||||| | || || ||||||||| | |||||| ||| ||||||||||| | ||||| Sbjct: 1731 cctggcagggtcgaaggaccgatatctctcaccagcctgcttgaaattgttctccttgtc 1672 Query: 88 nataatgcact 98 |||||||||| Sbjct: 1671 gataatgcact 1661
>gb|DQ078758.1| Oryza sativa (indica cultivar-group) catalase mRNA, complete cds Length = 1479 Score = 58.0 bits (29), Expect = 5e-06 Identities = 68/86 (79%) Strand = Plus / Minus Query: 1 aacccaccgntgnaggaaacggtnttncctggcangntcnaangaccgatatntntcacc 60 ||||||||| || || ||||| | || ||||||| | || || ||||| ||| | ||||| Sbjct: 1353 aacccaccgctggagaaaacgatcttgcctggcagggtcaaatgaccggtatctctcacc 1294 Query: 61 annctgnttgaaattgttntncttgt 86 | ||| ||||||||||| | ||||| Sbjct: 1293 agcctgtttgaaattgttctccttgt 1268 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 50,519 Number of Sequences: 3902068 Number of extensions: 50519 Number of successful extensions: 34 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 4 length of query: 99 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 78 effective length of database: 17,151,101,840 effective search space: 1337785943520 effective search space used: 1337785943520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)