ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X94352.1|TACATAGEN T.aestivum mRNA for catalase 96 2e-17
2gb|U20777.1|HVU20777 Hordeum vulgare catalase (Cat1) mRNA, compl... 96 2e-17
3gb|AF021938.1|AF021938 Hordeum vulgare catalase 1 (CAT1) gene, p... 64 8e-08
4gb|DQ078758.1| Oryza sativa (indica cultivar-group) catalase mRN... 58 5e-06

>emb|X94352.1|TACATAGEN T.aestivum mRNA for catalase
          Length = 1869

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacccaccgntgnaggaaacggtnttncctggcangntcnaangaccgatatntntcacc 60
            ||||||||| || |||||||||| || ||||||| | || || ||||||||| | |||||
Sbjct: 1470 aacccaccgctggaggaaacggtcttgcctggcagggtcgaaggaccgatatctctcacc 1411

                                                   
Query: 61   annctgnttgaaattgttntncttgtnnataatgcactt 99
            |  ||| ||||||||||| | |||||  |||||||||||
Sbjct: 1410 agcctgcttgaaattgttctccttgtcgataatgcactt 1372



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>gb|U20777.1|HVU20777 Hordeum vulgare catalase (Cat1) mRNA, complete cds
          Length = 1879

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacccaccgntgnaggaaacggtnttncctggcangntcnaangaccgatatntntcacc 60
            ||||||||| || |||||||||| || ||||||| | || || ||||||||| | |||||
Sbjct: 1429 aacccaccgctggaggaaacggtcttgcctggcagggtcgaaggaccgatatctctcacc 1370

                                                   
Query: 61   annctgnttgaaattgttntncttgtnnataatgcactt 99
            |  ||| ||||||||||| | |||||  |||||||||||
Sbjct: 1369 agcctgcttgaaattgttctccttgtcgataatgcactt 1331



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>gb|AF021938.1|AF021938 Hordeum vulgare catalase 1 (CAT1) gene, partial cds
          Length = 2130

 Score = 63.9 bits (32), Expect = 8e-08
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                        
Query: 28   cctggcangntcnaangaccgatatntntcaccannctgnttgaaattgttntncttgtn 87
            ||||||| | || || ||||||||| | ||||||  ||| ||||||||||| | ||||| 
Sbjct: 1731 cctggcagggtcgaaggaccgatatctctcaccagcctgcttgaaattgttctccttgtc 1672

                       
Query: 88   nataatgcact 98
             ||||||||||
Sbjct: 1671 gataatgcact 1661



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>gb|DQ078758.1| Oryza sativa (indica cultivar-group) catalase mRNA, complete cds
          Length = 1479

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 68/86 (79%)
 Strand = Plus / Minus

                                                                        
Query: 1    aacccaccgntgnaggaaacggtnttncctggcangntcnaangaccgatatntntcacc 60
            ||||||||| || || ||||| | || ||||||| | || || ||||| ||| | |||||
Sbjct: 1353 aacccaccgctggagaaaacgatcttgcctggcagggtcaaatgaccggtatctctcacc 1294

                                      
Query: 61   annctgnttgaaattgttntncttgt 86
            |  ||| ||||||||||| | |||||
Sbjct: 1293 agcctgtttgaaattgttctccttgt 1268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,519
Number of Sequences: 3902068
Number of extensions: 50519
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 4
length of query: 99
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 78
effective length of database: 17,151,101,840
effective search space: 1337785943520
effective search space used: 1337785943520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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