ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016771.1| Zea mays clone Contig604 mRNA sequence Length = 1517 Score = 212 bits (107), Expect = 1e-51 Identities = 242/287 (84%) Strand = Plus / Minus Query: 397 tgcgtggtgcacagcatgccgaccggatggcatagtgaactgaagcagggcaaaagctgc 456 |||||| ||||| ||||||||||| ||| || ||||||||||| |||||||| || || Sbjct: 860 tgcgtgatgcactgcatgccgacctcctgggattgtgaactgaagaagggcaaaggcagc 801 Query: 457 acaagcacgaagaactgatgaaggattccgtagcgtgtcaacaaacctagcaatctcagc 516 |||||||||||||| || |||||||||||| ||| || |||||| ||| ||||||||| Sbjct: 800 acaagcacgaagaattggtgaaggattccgaagcatggaaacaaatctaccaatctcaga 741 Query: 517 tcggctgcatctaagatgtccagcttcttgtataaaaagtgcttcagcaacctgagataa 576 || |||||||| || ||||||||||| |||||||| | |||||||||||| ||||| | Sbjct: 740 gcgactgcatctcaggtgtccagcttcgtgtataaacactgcttcagcaacatgagacag 681 Query: 577 cgctgctgcgcctgaggatgaagcagccgtagaaaacatttgtggatcggaaaaggttaa 636 |||||||| | ||||||| | ||||||| |||| |||||||||||||| || || || | Sbjct: 680 cgctgctggggctgaggaggcagcagccatagagaacatttgtggatctgagaaagtgag 621 Query: 637 cacaaaggcttctatatgcttaaatgccagccttcttgctccctcaa 683 |||||||| |||||||||||||||||| | ||||| |||||||||| Sbjct: 620 cacaaaggtttctatatgcttaaatgctattcttctagctccctcaa 574
>gb|AY105606.1| Zea mays PCO105510 mRNA sequence Length = 854 Score = 212 bits (107), Expect = 1e-51 Identities = 227/267 (85%) Strand = Plus / Minus Query: 397 tgcgtggtgcacagcatgccgaccggatggcatagtgaactgaagcagggcaaaagctgc 456 |||||||||||| ||||||||||| ||| || ||||||||||| |||||||| || || Sbjct: 275 tgcgtggtgcactgcatgccgacctcctgggattgtgaactgaagaagggcaaaggcagc 216 Query: 457 acaagcacgaagaactgatgaaggattccgtagcgtgtcaacaaacctagcaatctcagc 516 |||||||||||||| || |||||||||||| ||| || ||||||| ||| ||||||||| Sbjct: 215 acaagcacgaagaattggtgaaggattccgaagcatgacaacaaatctaccaatctcaga 156 Query: 517 tcggctgcatctaagatgtccagcttcttgtataaaaagtgcttcagcaacctgagataa 576 || |||||||| || ||||||||||| |||||||| | |||||||||||| ||||| | Sbjct: 155 gcgactgcatctcaggtgtccagcttcctgtataaacactgcttcagcaacatgagacag 96 Query: 577 cgctgctgcgcctgaggatgaagcagccgtagaaaacatttgtggatcggaaaaggttaa 636 |||||| | | ||||||| | |||||||||||| |||||||||||||| || || || | Sbjct: 95 cgctgccggggctgaggaggcagcagccgtagagaacatttgtggatctgagaaagtgag 36 Query: 637 cacaaaggcttctatatgcttaaatgc 663 |||||||| ||||||||||||||||| Sbjct: 35 cacaaaggtctctatatgcttaaatgc 9
>dbj|AK072816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143J11, full insert sequence Length = 2296 Score = 127 bits (64), Expect = 5e-26 Identities = 139/164 (84%) Strand = Plus / Minus Query: 431 gtgaactgaagcagggcaaaagctgcacaagcacgaagaactgatgaaggattccgtagc 490 ||||||||||| |||||||| || |||||||| ||||||| ||||| ||||||||| ||| Sbjct: 1617 gtgaactgaagaagggcaaaggcagcacaagcgcgaagaattgatgcaggattccggagc 1558 Query: 491 gtgtcaacaaacctagcaatctcagctcggctgcatctaagatgtccagcttcttgtata 550 || ||||||| ||||| ||||| || | |||||||| || |||||||||||||||||| Sbjct: 1557 atggcaacaaatctagcgatctcggcaccactgcatctcaggtgtccagcttcttgtata 1498 Query: 551 aaaagtgcttcagcaacctgagataacgctgctgcgcctgagga 594 || | ||| ||||||| |||||||| ||||||| | ||||||| Sbjct: 1497 aacactgcatcagcaatctgagatagtgctgctgaggctgagga 1454
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 521 ctgcatctaagatgtccagcttcttgtataaaaagtgcttcagcaacctgagataacgct 580 |||||||| || |||||||||||||||||||| | ||| ||||||| |||||||| ||| Sbjct: 24013 ctgcatctcaggtgtccagcttcttgtataaacactgcatcagcaatctgagatagtgct 24072 Query: 581 gctgcgcctgagga 594 |||| | ||||||| Sbjct: 24073 gctgaggctgagga 24086
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 521 ctgcatctaagatgtccagcttcttgtataaaaagtgcttcagcaacctgagataacgct 580 |||||||| || |||||||||||||||||||| | ||| ||||||| |||||||| ||| Sbjct: 21709330 ctgcatctcaggtgtccagcttcttgtataaacactgcatcagcaatctgagatagtgct 21709389 Query: 581 gctgcgcctgagga 594 |||| | ||||||| Sbjct: 21709390 gctgaggctgagga 21709403
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 521 ctgcatctaagatgtccagcttcttgtataaaaagtgcttcagcaacctgagataacgct 580 |||||||| || |||||||||||||||||||| | ||| ||||||| |||||||| ||| Sbjct: 21720993 ctgcatctcaggtgtccagcttcttgtataaacactgcatcagcaatctgagatagtgct 21721052 Query: 581 gctgcgcctgagga 594 |||| | ||||||| Sbjct: 21721053 gctgaggctgagga 21721066
>gb|AC109299.10| Mus musculus chromosome 1, clone RP24-302F18, complete sequence Length = 141796 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 tgcttctatgttgaaggccctg 275 |||||||||||||||||||||| Sbjct: 47673 tgcttctatgttgaaggccctg 47694
>ref|NM_115899.2| Arabidopsis thaliana ubiquitin-protein ligase AT3G60350 mRNA, complete cds Length = 3722 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 434 aactgaagcagggcaaaagctgcacaagc 462 |||||||| || ||||||||||||||||| Sbjct: 2823 aactgaagaagtgcaaaagctgcacaagc 2795
>gb|AC124339.9| Mus musculus chromosome 7, clone RP24-238P16, complete sequence Length = 163620 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 gctgttgccgcagctgctgcc 355 ||||||||||||||||||||| Sbjct: 36532 gctgttgccgcagctgctgcc 36512
>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence Length = 167971 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 actgtttgctcatcctttgcttcta 261 |||| |||||||||||||||||||| Sbjct: 117475 actgcttgctcatcctttgcttcta 117451
>emb|BX927159.10| Zebrafish DNA sequence from clone DKEY-17C23 in linkage group 17, complete sequence Length = 169728 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 taaaaagtgcttcagcaacct 569 ||||||||||||||||||||| Sbjct: 37459 taaaaagtgcttcagcaacct 37479
>emb|BX510305.5| Zebrafish DNA sequence from clone CH211-107P11 in linkage group 23, complete sequence Length = 156938 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tctgaagagttgccaaaattc 139 ||||||||||||||||||||| Sbjct: 66551 tctgaagagttgccaaaattc 66531
>dbj|AB179766.1| Alternaria alternata AF-toxin biosynthesis gene cluster (Aft9-1, Aft10-1, Aft11-1, Aft12-1, AftR-2, Aft3-2), complete cds Length = 37168 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 638 acaaaggcttctatatgctta 658 ||||||||||||||||||||| Sbjct: 23780 acaaaggcttctatatgctta 23800
>gb|AF126378.1|MMPOLE02 Mus musculus DNA polymerase epsilon catalytic subunit (Pole) gene, exons 2 through 12 Length = 7538 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 actgtttgctcatcctttgcttcta 261 |||| |||||||||||||||||||| Sbjct: 1048 actgcttgctcatcctttgcttcta 1072
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tcgtctggttcatgccaaag 178 |||||||||||||||||||| Sbjct: 62915 tcgtctggttcatgccaaag 62934
>ref|XM_641369.1| Dictyostelium discoideum hypothetical protein (DDB0216730), partial mRNA Length = 1743 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 684 attttacaattttggaacta 703 |||||||||||||||||||| Sbjct: 370 attttacaattttggaacta 351
>ref|XM_511928.1| PREDICTED: Pan troglodytes LOC455177 (LOC455177), mRNA Length = 2472 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gctgttgccgcagctgctgc 354 |||||||||||||||||||| Sbjct: 1234 gctgttgccgcagctgctgc 1215
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 gaaaacatttgtggatcgga 627 |||||||||||||||||||| Sbjct: 156296 gaaaacatttgtggatcgga 156315
>gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, complete sequence Length = 215265 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 aagatgccaaccaagttctctgaa 124 ||||||||||||||| |||||||| Sbjct: 103242 aagatgccaaccaagatctctgaa 103219
>emb|BX908387.8| Zebrafish DNA sequence from clone DKEY-45B6 in linkage group 3, complete sequence Length = 212624 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acttgcttttacacacaaaa 74 |||||||||||||||||||| Sbjct: 72694 acttgcttttacacacaaaa 72675
>gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, complete sequence Length = 193468 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ttctctgaagagttgccaaaattc 139 ||||||||| |||||||||||||| Sbjct: 142965 ttctctgaaaagttgccaaaattc 142988
>gb|AE004374.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 31 of 93 of the complete chromosome Length = 10367 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 520 gctgcatctaagatgtccagcttc 543 |||||||||||||| ||||||||| Sbjct: 9702 gctgcatctaagatttccagcttc 9679
>emb|Z99117.2|BSUB0014 Bacillus subtilis complete genome (section 14 of 21): from 2613658 to 2812830 Length = 199173 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 acctgagataacgctgctgc 585 |||||||||||||||||||| Sbjct: 185214 acctgagataacgctgctgc 185233
>emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 226576 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 632 gttaacacaaaggcttctat 651 |||||||||||||||||||| Sbjct: 64967 gttaacacaaaggcttctat 64986
>gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, complete sequence Length = 145880 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 ttctctgaagagttgccaaaattc 139 ||||||||| |||||||||||||| Sbjct: 94450 ttctctgaaaagttgccaaaattc 94427
>gb|AC116419.32| Mus musculus chromosome 1, clone RP24-89C10, complete sequence Length = 229522 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 677 ccctcaaattttacaatttt 696 |||||||||||||||||||| Sbjct: 138382 ccctcaaattttacaatttt 138363
>gb|AC159098.6| Mus musculus chromosome 8, clone RP24-391C9, complete sequence Length = 184137 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 ttctctgaagagttgccaaaattc 139 ||||||||| |||||||||||||| Sbjct: 3450 ttctctgaaaagttgccaaaattc 3427
>gb|AC015674.12| Homo sapiens chromosome 17, clone RP11-138C9, complete sequence Length = 187822 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gctgttgccgcagctgctgc 354 |||||||||||||||||||| Sbjct: 98330 gctgttgccgcagctgctgc 98349
>emb|BX569789.4| Zebrafish DNA sequence from clone DKEY-68O6 in linkage group 3, complete sequence Length = 244662 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 acttgcttttacacacaaaa 74 |||||||||||||||||||| Sbjct: 116003 acttgcttttacacacaaaa 116022
>gb|AC117871.5| Rattus norvegicus X BAC CH230-335H24 (Children's Hospital Oakland Research Institute) complete sequence Length = 148497 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 642 aggcttctatatgcttaaat 661 |||||||||||||||||||| Sbjct: 10209 aggcttctatatgcttaaat 10228
>emb|BX005166.14| Zebrafish DNA sequence from clone CH211-137K18 in linkage group 3, complete sequence Length = 178013 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ctgctgcccaccttaagact 367 |||||||||||||||||||| Sbjct: 79263 ctgctgcccaccttaagact 79282
>gb|AC124243.3| Homo sapiens chromosome 8, clone CTD-3077F2, complete sequence Length = 188240 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 tgggagctgttgccgcagctgctgccca 357 ||||||||| |||||| ||||||||||| Sbjct: 98751 tgggagctgctgccgctgctgctgccca 98724
>gb|AC068541.7|AC068541 Homo sapiens BAC clone RP11-243P9 from Y, complete sequence Length = 37566 Score = 40.1 bits (20), Expect = 9.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 550 aaaaagtgcttcagcaacctgagataac 577 ||||||||||||| |||||||||||||| Sbjct: 17716 aaaaagtgcttca-caacctgagataac 17742
>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence Length = 174082 Score = 40.1 bits (20), Expect = 9.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 550 aaaaagtgcttcagcaacctgagataac 577 ||||||||||||| |||||||||||||| Sbjct: 158017 aaaaagtgcttca-caacctgagataac 157991
>gb|AC090629.8| Homo sapiens 12 BAC RP11-410B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159240 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cagctgctcttctccaccat 224 |||||||||||||||||||| Sbjct: 117270 cagctgctcttctccaccat 117251
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 catgccaaagccatagatat 188 |||||||||||||||||||| Sbjct: 1332661 catgccaaagccatagatat 1332680
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 398 gcgtggtgcacagcatgccgaccg 421 ||||||||| |||||||||||||| Sbjct: 4221665 gcgtggtgcgcagcatgccgaccg 4221688
>dbj|AB018318.1| Homo sapiens mRNA for KIAA0775 protein, partial cds Length = 4121 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gctgttgccgcagctgctgc 354 |||||||||||||||||||| Sbjct: 1366 gctgttgccgcagctgctgc 1347
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y Length = 1351786 Score = 40.1 bits (20), Expect = 9.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 550 aaaaagtgcttcagcaacctgagataac 577 ||||||||||||| |||||||||||||| Sbjct: 1311018 aaaaagtgcttca-caacctgagataac 1310992 Score = 40.1 bits (20), Expect = 9.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 550 aaaaagtgcttcagcaacctgagataac 577 ||||||||||||| |||||||||||||| Sbjct: 977194 aaaaagtgcttca-caacctgagataac 977220
>dbj|AP006253.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-85A6, complete sequence Length = 130487 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 tgggagctgttgccgcagctgctgccca 357 ||||||||| |||||| ||||||||||| Sbjct: 118017 tgggagctgctgccgctgctgctgccca 118044
>ref|NM_014726.1| Homo sapiens TBK1 binding protein 1 (TBKBP1), mRNA Length = 4121 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gctgttgccgcagctgctgc 354 |||||||||||||||||||| Sbjct: 1366 gctgttgccgcagctgctgc 1347
>gb|AC174474.1| Pan troglodytes chromosome X clone CH251-58H10 map human ortholog p11.4, complete sequence Length = 159881 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 642 aggcttctatatgcttaaat 661 |||||||||||||||||||| Sbjct: 140591 aggcttctatatgcttaaat 140572
>gb|AC145926.4| Gallus gallus BAC clone CH261-29I12 from chromosome unknown, complete sequence Length = 224974 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tgccaaccaagttctctgaagagt 128 |||||| ||||||||||||||||| Sbjct: 168758 tgccaaacaagttctctgaagagt 168781
>emb|AL663104.17| Mouse DNA sequence from clone RP23-207H18 on chromosome X, complete sequence Length = 211462 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gaactgaagcagggcaaaag 452 |||||||||||||||||||| Sbjct: 15903 gaactgaagcagggcaaaag 15922
>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 337101 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 642 aggcttctatatgcttaaat 661 |||||||||||||||||||| Sbjct: 291521 aggcttctatatgcttaaat 291502
>gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, complete sequence Length = 180673 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 tgggagctgttgccgcagctgctgccca 357 ||||||||| |||||| ||||||||||| Sbjct: 118829 tgggagctgctgccgctgctgctgccca 118802
>dbj|AB020861.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular colorectal and non-small cell lung cancer , segment 4/11 Length = 100000 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 tgggagctgttgccgcagctgctgccca 357 ||||||||| |||||| ||||||||||| Sbjct: 46790 tgggagctgctgccgctgctgctgccca 46817
>dbj|AB010415.1| Actinobacillus actinomycetemcomitans gene cluster for 6-deoxy-L-talan synthesis, complete cds Length = 23112 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 678 cctcaaattttacaattttg 697 |||||||||||||||||||| Sbjct: 16400 cctcaaattttacaattttg 16419 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,311,813 Number of Sequences: 3902068 Number of extensions: 6311813 Number of successful extensions: 121189 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 121006 Number of HSP's gapped (non-prelim): 192 length of query: 708 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 685 effective length of database: 17,143,297,704 effective search space: 11743158927240 effective search space used: 11743158927240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
