ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY365035.1| Zea mays pollen germination-related protein-like ... 56 1e-04
2gb|AY105408.1| Zea mays PCO132099 mRNA sequence 54 4e-04
3gb|BT016752.1| Zea mays clone Contig585 mRNA sequence 46 0.094
4ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predic... 44 0.37
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.37
6gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 44 0.37
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
8dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
9gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.5
10dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.5
11ref|NM_189622.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
12gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.8
13gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosom... 40 5.8
14ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitat... 40 5.8
15gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, com... 40 5.8
16emb|AL162407.14| Human DNA sequence from clone RP11-393E20 on ch... 40 5.8
17emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 i... 40 5.8
18gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated... 40 5.8
19dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 40 5.8
20dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 5.8
21gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, co... 40 5.8
22dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-l... 40 5.8
23gb|AF313771.1| Drosophila helvetica M-type P element, complete cds 40 5.8
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
25dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
26dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
27gb|AC005886.2|AC005886 b240g16, complete sequence 40 5.8
28dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.8
29emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter 40 5.8
30emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transpor... 40 5.8
31emb|X60990.1|DBPTRANSP D.bifasciata p-transposon (clone jbifM3) 40 5.8

>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence
          Length = 1106

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 380 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgc 431
           |||||||||||| || |||||||||||||||||| || || ||||| |||||
Sbjct: 754 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgc 703



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>gb|AY105408.1| Zea mays PCO132099 mRNA sequence
          Length = 795

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 383 ccctcgtctccctggtgttgtaagagctgcacccgggacactt 425
           |||||||||||| ||||||||| ||||||||| |||| |||||
Sbjct: 585 ccctcgtctcccgggtgttgtacgagctgcacgcggggcactt 543



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>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence
          Length = 1421

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 383  ccctcgtctccctggtgttgtaagagctgcacccgggacactt 425
            |||||||||||| ||||||||| || |||||| |||| |||||
Sbjct: 1085 ccctcgtctcccgggtgttgtacgaactgcacgcggggcactt 1043



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>ref|XM_470211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1050

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 396 ggtgttgtaagagctgcacccgggacactt 425
           |||||||||||||||||| ||||| |||||
Sbjct: 988 ggtgttgtaagagctgcatccggggcactt 959



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 396     ggtgttgtaagagctgcacccgggacactt 425
               |||||||||||||||||| ||||| |||||
Sbjct: 2533901 ggtgttgtaagagctgcatccggggcactt 2533872



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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 396    ggtgttgtaagagctgcacccgggacactt 425
              |||||||||||||||||| ||||| |||||
Sbjct: 136193 ggtgttgtaagagctgcatccggggcactt 136222



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 396     ggtgttgtaagagctgcacccgggacactt 425
               |||||||||||||||||| ||||| |||||
Sbjct: 2534011 ggtgttgtaagagctgcatccggggcactt 2533982



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>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full
            insert sequence
          Length = 2604

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 396  ggtgttgtaagagctgcacccgggacactt 425
            |||||||||||||||||| ||||| |||||
Sbjct: 2252 ggtgttgtaagagctgcatccggggcactt 2223



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>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306,  section 292 of 469 of the
            complete genome
          Length = 10174

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 149  cggtggccttgctgtcggcgacggc 173
            |||||||||||||||||||| ||||
Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    ccgatttattcaaccgcagcg 113
             |||||||||||||||||||||
Sbjct: 56000 ccgatttattcaaccgcagcg 55980



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>ref|NM_189622.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 gtcgtctcctcctcgccgtc 349
           ||||||||||||||||||||
Sbjct: 161 gtcgtctcctcctcgccgtc 142



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    atgagcaaccacggtggcct 157
              ||||||||||||||||||||
Sbjct: 618915 atgagcaaccacggtggcct 618934



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>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence
          Length = 205029

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    tgagtagtgtctgttgtact 329
              ||||||||||||||||||||
Sbjct: 118198 tgagtagtgtctgttgtact 118179



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>ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitated glucose
            transporter), member 2 (Slc2a2), mRNA
          Length = 2491

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 178  aattcctggcctcttcagagagtg 201
            |||||||||| |||||||||||||
Sbjct: 1607 aattcctggcgtcttcagagagtg 1630



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>gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, complete sequence
          Length = 176264

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 178   aattcctggcctcttcagagagtg 201
             |||||||||| |||||||||||||
Sbjct: 18188 aattcctggcgtcttcagagagtg 18165



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>emb|AL162407.14| Human DNA sequence from clone RP11-393E20 on chromosome 10 Contains the
             3' end of the gene for a novel NHL repeat domain
             containing protein (FLJ33312 FLJ25621 DKFZp313F0131
             FLJ30653 FLJ36994 FLJ20147), complete sequence
          Length = 114145

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   agtgagtagtgtctgttgta 327
             ||||||||||||||||||||
Sbjct: 94477 agtgagtagtgtctgttgta 94496



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>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 306   tgagtgagtagtgtctgttgtact 329
             |||||||| |||||||||||||||
Sbjct: 42367 tgagtgagaagtgtctgttgtact 42390



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>gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated glucose
            transporter), member 2, mRNA (cDNA clone MGC:25413
            IMAGE:4236331), complete cds
          Length = 2468

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 178  aattcctggcctcttcagagagtg 201
            |||||||||| |||||||||||||
Sbjct: 1577 aattcctggcgtcttcagagagtg 1600



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>dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730032F11 product:solute
           carrier family 2 (facilitated glucose transporter),
           member 2, full insert sequence
          Length = 1651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 178 aattcctggcctcttcagagagtg 201
           |||||||||| |||||||||||||
Sbjct: 771 aattcctggcgtcttcagagagtg 794



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>dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F520013J12 product:solute carrier family 2
            (facilitated glucose transporter), member 2, full insert
            sequence
          Length = 2503

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 178  aattcctggcctcttcagagagtg 201
            |||||||||| |||||||||||||
Sbjct: 1593 aattcctggcgtcttcagagagtg 1616



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>gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, complete sequence
          Length = 212299

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 303   gactgagtgagtagtgtctgttgt 326
             ||||||||| ||||||||||||||
Sbjct: 96906 gactgagtgggtagtgtctgttgt 96883



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>dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched
            library, clone:1300019L19 product:solute carrier family 2
            (facilitated glucose transporter), member 2, full insert
            sequence
          Length = 2538

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 178  aattcctggcctcttcagagagtg 201
            |||||||||| |||||||||||||
Sbjct: 1659 aattcctggcgtcttcagagagtg 1682



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>gb|AF313771.1| Drosophila helvetica M-type P element, complete cds
          Length = 2807

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  agtgtctgttgtactgtcgt 334
            ||||||||||||||||||||
Sbjct: 1359 agtgtctgttgtactgtcgt 1340



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     gtcgtctcctcctcgccgtc 349
               ||||||||||||||||||||
Sbjct: 4595220 gtcgtctcctcctcgccgtc 4595201



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>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0695A04
          Length = 158133

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  gtcgtctcctcctcgccgtc 349
            ||||||||||||||||||||
Sbjct: 2436 gtcgtctcctcctcgccgtc 2417



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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F03
          Length = 149699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    gtcgtctcctcctcgccgtc 349
              ||||||||||||||||||||
Sbjct: 129907 gtcgtctcctcctcgccgtc 129888



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>gb|AC005886.2|AC005886 b240g16, complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   agtgagtagtgtctgttgta 327
             ||||||||||||||||||||
Sbjct: 81534 agtgagtagtgtctgttgta 81515



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>dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15D01, TM0004a,
             complete sequence
          Length = 92631

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   tgcagcaagcactagcagct 242
             ||||||||||||||||||||
Sbjct: 67539 tgcagcaagcactagcagct 67558



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>emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter
          Length = 2183

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 178  aattcctggcctcttcagagagtg 201
            |||||||||| |||||||||||||
Sbjct: 1597 aattcctggcgtcttcagagagtg 1620



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>emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transporter protein
          Length = 2491

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 178  aattcctggcctcttcagagagtg 201
            |||||||||| |||||||||||||
Sbjct: 1607 aattcctggcgtcttcagagagtg 1630



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>emb|X60990.1|DBPTRANSP D.bifasciata p-transposon (clone jbifM3)
          Length = 2935

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  agtgtctgttgtactgtcgt 334
            ||||||||||||||||||||
Sbjct: 1398 agtgtctgttgtactgtcgt 1379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,083,700
Number of Sequences: 3902068
Number of extensions: 3083700
Number of successful extensions: 60455
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60311
Number of HSP's gapped (non-prelim): 144
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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