ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence Length = 627 Score = 228 bits (115), Expect = 2e-56 Identities = 208/239 (87%) Strand = Plus / Minus Query: 331 tgatcttcctgtcaagctcatccttcttagccccgaccacgcgactcacctcctgcccgc 390 |||||||||| |||||||| |||||||||||||| | ||| || | ||||||| ||| Sbjct: 361 tgatcttcctctcaagctcgtccttcttagccccaatcacacggcctacctccttcccat 302 Query: 391 ccttcaccagcacaaaggtcggcatcgcctctacgcggaatgtctttgcaacctccgcga 450 |||| |||||||| || || |||||||||||||| ||||| |||| |||||||||| Sbjct: 301 ccttgaccagcacgaacgttggcatcgcctctaccttccatgtccttgcgacctccgcga 242 Query: 451 gctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttga 510 ||||||||||||||| ||||| ||||| ||| |||| |||||||||||||| |||||||| Sbjct: 241 gctcgtcgacgtcgaccttgatgaagatggcatcggtgaagcgggaggccagctccttga 182 Query: 511 aggcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcaccatc 569 |||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 181 aggccggctcgatgaagcggcagggcccgcaccaggacgccgagaagtcgatcaccatc 123
>gb|AY104013.1| Zea mays PCO085678 mRNA sequence Length = 736 Score = 228 bits (115), Expect = 2e-56 Identities = 208/239 (87%) Strand = Plus / Minus Query: 331 tgatcttcctgtcaagctcatccttcttagccccgaccacgcgactcacctcctgcccgc 390 |||||||||| |||||||| |||||||||||||| | ||| || | ||||||| ||| Sbjct: 425 tgatcttcctctcaagctcgtccttcttagccccaatcacacggcctacctccttcccat 366 Query: 391 ccttcaccagcacaaaggtcggcatcgcctctacgcggaatgtctttgcaacctccgcga 450 |||| |||||||| || || |||||||||||||| ||||| |||| |||||||||| Sbjct: 365 ccttgaccagcacgaacgttggcatcgcctctaccttccatgtccttgcgacctccgcga 306 Query: 451 gctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttga 510 ||||||||||||||| ||||| ||||| ||| |||| |||||||||||||| |||||||| Sbjct: 305 gctcgtcgacgtcgaccttgatgaagatggcatcggtgaagcgggaggccagctccttga 246 Query: 511 aggcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcaccatc 569 |||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 245 aggccggctcgatgaagcggcagggcccgcaccaggacgccgagaagtcgatcaccatc 187
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 6e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 453 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 512 |||||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||| Sbjct: 33089201 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 33089260 Query: 513 gcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcaccatctg 571 || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 33089261 gccggctcgatgaagcggcagggcccgcaccaggtggcggagaagtcgatcacgatctg 33089319 Score = 83.8 bits (42), Expect = 7e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 304 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 363 ||||| |||| ||||| |||||| | |||| ||||| || || |||||||||||||| | Sbjct: 33087731 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 33087790 Query: 364 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 | ||||||||||| ||||||| ||||||||| | | ||||||||||||||| ||||| Sbjct: 33087791 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 33087848
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 6e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 453 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 512 |||||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||| Sbjct: 33179711 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 33179770 Query: 513 gcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcaccatctg 571 || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 33179771 gccggctcgatgaagcggcagggcccgcaccaggtggcggagaagtcgatcacgatctg 33179829 Score = 83.8 bits (42), Expect = 7e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 304 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 363 ||||| |||| ||||| |||||| | |||| ||||| || || |||||||||||||| | Sbjct: 33178241 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 33178300 Query: 364 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 | ||||||||||| ||||||| ||||||||| | | ||||||||||||||| ||||| Sbjct: 33178301 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 33178358
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 157 bits (79), Expect = 6e-35 Identities = 109/119 (91%) Strand = Plus / Minus Query: 453 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 512 |||||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||| Sbjct: 34107 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 34048 Query: 513 gcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcaccatctg 571 || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 34047 gccggctcgatgaagcggcagggcccgcaccaggtggcggagaagtcgatcacgatctg 33989 Score = 83.8 bits (42), Expect = 7e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 304 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 363 ||||| |||| ||||| |||||| | |||| ||||| || || |||||||||||||| | Sbjct: 35577 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 35518 Query: 364 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 | ||||||||||| ||||||| ||||||||| | | ||||||||||||||| ||||| Sbjct: 35517 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 35460
>ref|NM_185032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 745 Score = 153 bits (77), Expect = 9e-34 Identities = 104/113 (92%) Strand = Plus / Minus Query: 453 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 512 |||||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||| Sbjct: 358 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 299 Query: 513 gcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcac 565 || ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 298 gccggctcgatgaagcggcagggcccgcaccaggtggcggagaagtcgatcac 246 Score = 83.8 bits (42), Expect = 7e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 304 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 363 ||||| |||| ||||| |||||| | |||| ||||| || || |||||||||||||| | Sbjct: 507 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 448 Query: 364 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 | ||||||||||| ||||||| ||||||||| | | ||||||||||||||| ||||| Sbjct: 447 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 390
>dbj|AK062383.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B11, full insert sequence Length = 701 Score = 153 bits (77), Expect = 9e-34 Identities = 104/113 (92%) Strand = Plus / Minus Query: 453 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 512 |||||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||| Sbjct: 362 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 303 Query: 513 gcgggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcac 565 || ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 302 gccggctcgatgaagcggcagggcccgcaccaggtggcggagaagtcgatcac 250 Score = 83.8 bits (42), Expect = 7e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 304 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 363 ||||| |||| ||||| |||||| | |||| ||||| || || |||||||||||||| | Sbjct: 511 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 452 Query: 364 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 | ||||||||||| ||||||| ||||||||| | | ||||||||||||||| ||||| Sbjct: 451 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 394
>ref|XM_476962.1| Oryza sativa (japonica cultivar-group), mRNA Length = 417 Score = 83.8 bits (42), Expect = 7e-13 Identities = 111/134 (82%) Strand = Plus / Minus Query: 378 acctcctgcccgcccttcaccagcacaaaggtcggcatcgcctctacgcggaatgtcttt 437 ||||||| |||||| || ||||||| || |||||||||||||| || || | ||| Sbjct: 326 acctcctcgccgcccctcgccagcacgaacgtcggcatcgcctccacccgccaggtccgc 267 Query: 438 gcaacctccgcgagctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggag 497 || ||||||||||||||||||||||||| ||||| |||| | |||||| ||||||| | Sbjct: 266 gccacctccgcgagctcgtcgacgtcgaccttgaggaaggcgacgtcggtgaagcggccg 207 Query: 498 gccatctccttgaa 511 |||||||||||||| Sbjct: 206 gccatctccttgaa 193
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 445 ccgcgagctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatct 504 ||||||||||||||||||||| ||||| |||| | |||||| ||||||| |||||||| Sbjct: 4913699 ccgcgagctcgtcgacgtcgaccttgaggaaggcgacgtcggtgaagcggccggccatct 4913758 Query: 505 ccttgaa 511 ||||||| Sbjct: 4913759 ccttgaa 4913765 Score = 40.1 bits (20), Expect = 8.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 378 acctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 ||||||| |||||| || ||||||| || |||||||||||||| Sbjct: 4913076 acctcctcgccgcccctcgccagcacgaacgtcggcatcgcctc 4913119
>dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003E08 Length = 161095 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 445 ccgcgagctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatct 504 ||||||||||||||||||||| ||||| |||| | |||||| ||||||| |||||||| Sbjct: 99183 ccgcgagctcgtcgacgtcgaccttgaggaaggcgacgtcggtgaagcggccggccatct 99242 Query: 505 ccttgaa 511 ||||||| Sbjct: 99243 ccttgaa 99249 Score = 40.1 bits (20), Expect = 8.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 378 acctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 421 ||||||| |||||| || ||||||| || |||||||||||||| Sbjct: 98560 acctcctcgccgcccctcgccagcacgaacgtcggcatcgcctc 98603
>ref|XM_803076.1| Trypanosoma cruzi strain CL Brener tryparedoxin (Tc00.1047053509997.30) partial mRNA Length = 435 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 527 gcggcagggcccgcaccaggaggcggagaagt 558 |||||||||| |||||||||||||||||||| Sbjct: 132 gcggcagggcgggcaccaggaggcggagaagt 101
>emb|AJ313314.1|TCR313314 Trypanosoma cruzi TPNI gene for Tryparedoxin Length = 435 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 527 gcggcagggcccgcaccaggaggcggagaagt 558 |||||||||| |||||||||||||||||||| Sbjct: 132 gcggcagggcgggcaccaggaggcggagaagt 101
>gb|AY575954.1| Glycine max thioredoxin mRNA, complete cds Length = 408 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 453 tcgtcgacgtcgatcttgacgaag 476 |||||||||||||||||||||||| Sbjct: 263 tcgtcgacgtcgatcttgacgaag 240
>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the gene for a novel protein (3732413I11Rik), a novel gene (4930597A21Rik), the 5' end of the Ebf1 gene for early B-cell factor 1, a novel gene and a CpG island, complete sequence Length = 215524 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 180 ggattttgcagcattttagaag 201 |||||||||||||||||||||| Sbjct: 99922 ggattttgcagcattttagaag 99901
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 499 ccatctccttgaaggcgggct 519 ||||||||||||||||||||| Sbjct: 812133 ccatctccttgaaggcgggct 812153
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 520 cgatgaagcggcagggcccgcacca 544 |||||| |||||||||||||||||| Sbjct: 1949724 cgatgatgcggcagggcccgcacca 1949700
>gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete sequence Length = 385816 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 574 ggagcaagcgcatggcagaga 594 ||||||||||||||||||||| Sbjct: 318347 ggagcaagcgcatggcagaga 318327
>ref|XM_747823.1| Aspergillus fumigatus Af293 MFS multidrug transporter (Afu1g15490) partial mRNA Length = 1809 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 caaggtgacagatgacgatca 116 ||||||||||||||||||||| Sbjct: 168 caaggtgacagatgacgatca 188
>gb|DQ378288.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid 44I5, complete sequence Length = 39850 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 631 ttactatttactactactact 651 ||||||||||||||||||||| Sbjct: 11927 ttactatttactactactact 11907
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 628 ggattactatttactactact 648 ||||||||||||||||||||| Sbjct: 22236389 ggattactatttactactact 22236409
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 528 cggcagggcccgcaccaggaggcggagaagtcgatca 564 ||||| |||||||||||||| || |||||||||||| Sbjct: 8764205 cggcacggcccgcaccaggacgcccagaagtcgatca 8764241
>gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complete sequence Length = 165768 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 accataggagcctcttgccactggg 252 |||||||| |||||||||||||||| Sbjct: 127895 accataggtgcctcttgccactggg 127919
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 532 agggcccgcaccaggaggcgg 552 ||||||||||||||||||||| Sbjct: 831021 agggcccgcaccaggaggcgg 831041
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 628 ggattactatttactactact 648 ||||||||||||||||||||| Sbjct: 132233 ggattactatttactactact 132253
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 532 agggcccgcaccaggaggcgg 552 ||||||||||||||||||||| Sbjct: 500409 agggcccgcaccaggaggcgg 500429
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 543 caggaggcggagaagtcgatc 563 ||||||||||||||||||||| Sbjct: 3544062 caggaggcggagaagtcgatc 3544042
>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence Length = 200560 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ccagagttacacatttacacgatc 146 ||||||| |||||||||||||||| Sbjct: 82506 ccagagtcacacatttacacgatc 82483
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 530 gcagggcccgcaccaggaggcggagaagtcga 561 ||||||||||||||||| ||| ||||||||| Sbjct: 868594 gcagggcccgcaccaggcggcccagaagtcga 868563
>ref|XM_474336.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 316 cgggcgcgatgaggcggcacggcccgcaccag 285
>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09, complete sequence Length = 178320 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 457 cgacgtcgatcttgacgaagaggg 480 |||| ||||||||||||||||||| Sbjct: 60694 cgacatcgatcttgacgaagaggg 60717
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 cgacgtcgatcttgacgaagaggg 480 |||| ||||||||||||||||||| Sbjct: 16241 cgacatcgatcttgacgaagaggg 16218
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 gagggcgtcggcgaagcgggaggc 499 |||||||||||||||| ||||||| Sbjct: 7522 gagggcgtcggcgaagtgggaggc 7545
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0028G07, complete sequence Length = 157463 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 gagggcgtcggcgaagcgggaggc 499 |||||||||||||||| ||||||| Sbjct: 93839 gagggcgtcggcgaagtgggaggc 93862
>ref|NM_009925.2| Mus musculus procollagen, type X, alpha 1 (Col10a1), mRNA Length = 4964 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cttcctgtcaagctcatcct 354 |||||||||||||||||||| Sbjct: 2741 cttcctgtcaagctcatcct 2760
>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence Length = 319367 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cttcctgtcaagctcatcct 354 |||||||||||||||||||| Sbjct: 69717 cttcctgtcaagctcatcct 69698
>emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on chromosome 6 Contains part of a novel gene (FLJ20342), complete sequence Length = 131374 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 atcacagtaacttgattgcc 95 |||||||||||||||||||| Sbjct: 22916 atcacagtaacttgattgcc 22935
>emb|Z21610.1|MMA1TXCOL M.musculus encoding alpha-1 type-x collagen Length = 3422 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cttcctgtcaagctcatcct 354 |||||||||||||||||||| Sbjct: 2342 cttcctgtcaagctcatcct 2361
>emb|X67348.1|MMCOL10A Mus musculus COL10A1 gene for alpha-1 collagen type X Length = 9331 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cttcctgtcaagctcatcct 354 |||||||||||||||||||| Sbjct: 7108 cttcctgtcaagctcatcct 7127
>emb|X65121.1|MMCOL10A1 M.musculus COL10A1 gene for alpha 1 (X) collagen Length = 2215 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cttcctgtcaagctcatcct 354 |||||||||||||||||||| Sbjct: 1938 cttcctgtcaagctcatcct 1957
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 cgaagagggcgtcggcgaag 491 |||||||||||||||||||| Sbjct: 177544 cgaagagggcgtcggcgaag 177525
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 3211 cgggcgcgatgaggcggcacggcccgcaccag 3180
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 538 cgcaccaggaggcggagaagtcga 561 ||||||||| |||||||||||||| Sbjct: 783856 cgcaccaggcggcggagaagtcga 783879
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 tgcccgcccttcaccagcac 403 |||||||||||||||||||| Sbjct: 4313213 tgcccgcccttcaccagcac 4313194
>emb|BX322574.10| Zebrafish DNA sequence from clone DKEY-35I15 in linkage group 3, complete sequence Length = 150999 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 agtgtcgttttttcagtaac 23 |||||||||||||||||||| Sbjct: 13112 agtgtcgttttttcagtaac 13093
>gb|AC147892.2| Xenopus tropicalis clone CH216-35D21, complete sequence Length = 178580 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 catggcagagatcagcaggg 603 |||||||||||||||||||| Sbjct: 140531 catggcagagatcagcaggg 140512
>gb|DQ021448.1| Nicotiana alata thioredoxin H (Trxh) mRNA, complete cds Length = 699 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 449 gagctcgtcgacgtcgatcttgacgaag 476 |||||| ||||||||||| ||||||||| Sbjct: 412 gagctcatcgacgtcgattttgacgaag 385
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 34549089 cgggcgcgatgaggcggcacggcccgcaccag 34549058
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 gagggcgtcggcgaagcgggaggc 499 |||||||||||||||| ||||||| Sbjct: 17499825 gagggcgtcggcgaagtgggaggc 17499848
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 cgacgtcgatcttgacgaagaggg 480 |||| ||||||||||||||||||| Sbjct: 12679062 cgacatcgatcttgacgaagaggg 12679039
>gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Cancer Institute Human Bac Library) complete sequence Length = 94508 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ggattttgcagcattttaga 199 |||||||||||||||||||| Sbjct: 6430 ggattttgcagcattttaga 6411
>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence Length = 206798 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ccagagttacacatttacacgatc 146 ||||||| |||||||||||||||| Sbjct: 9002 ccagagtcacacatttacacgatc 9025
>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212622 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 630 attactatttactactactactcg 653 |||| ||||||||||||||||||| Sbjct: 98802 attaatatttactactactactcg 98825
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 tgcccgcccttcaccagcac 403 |||||||||||||||||||| Sbjct: 91802 tgcccgcccttcaccagcac 91783
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0058D03 Length = 184235 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 cgacgtcgatcttgacgaagaggg 480 |||| ||||||||||||||||||| Sbjct: 23057 cgacatcgatcttgacgaagaggg 23034
>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0051M20 Length = 152702 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 cgacgtcgatcttgacgaagaggg 480 |||| ||||||||||||||||||| Sbjct: 65031 cgacatcgatcttgacgaagaggg 65008
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 ctcgtcgacgtcgatcttgacgaa 475 |||||||||||||||||| ||||| Sbjct: 1239124 ctcgtcgacgtcgatcttcacgaa 1239147
>gb|AF153282.1|AF153282 Methylocystis sp. WI14 soluble methane monooxygenase gene cluster, partial sequence Length = 5253 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ctcgtcgacgtcgatcttga 471 |||||||||||||||||||| Sbjct: 2840 ctcgtcgacgtcgatcttga 2821
>emb|Z99281.1|CEY57G11C Caenorhabditis elegans YAC Y57G11C, complete sequence Length = 313573 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 tactatttactactactact 651 |||||||||||||||||||| Sbjct: 2923 tactatttactactactact 2904
>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence Length = 155483 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tttttcagtaacaaactaca 31 |||||||||||||||||||| Sbjct: 89845 tttttcagtaacaaactaca 89864
>gb|AY111386.1| Zea mays CL49128_1 mRNA sequence Length = 842 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 541 cgggcgcgatgaggcggcacggcccgcaccag 572
>gb|AC153960.3| Mus musculus 10 BAC RP24-210O10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162022 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cttcctgtcaagctcatcct 354 |||||||||||||||||||| Sbjct: 121212 cttcctgtcaagctcatcct 121193
>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence Length = 63897 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 2663 cgggcgcgatgaggcggcacggcccgcaccag 2632
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 84970 cgggcgcgatgaggcggcacggcccgcaccag 84939
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 acctccgcgagctcgtcgac 460 |||||||||||||||||||| Sbjct: 1333317 acctccgcgagctcgtcgac 1333336
>gb|U81594.1|MSU81594 Methylocystis sp. M soluble methane monooxygenase gene cluster mmoX, mmoY, mmoB, mmoZ and mmoC genes, complete cds Length = 5873 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ctcgtcgacgtcgatcttga 471 |||||||||||||||||||| Sbjct: 3404 ctcgtcgacgtcgatcttga 3385
>emb|AM183298.1| Oryza sativa (japonica cultivar-group) chloroplast partial mRNA for thioredoxin x (trx-x gene) Length = 348 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 514 cgggctcgatgaagcggcagggcccgcaccag 545 ||||| |||||| |||||| |||||||||||| Sbjct: 121 cgggcgcgatgaggcggcacggcccgcaccag 90
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 476 gagggcgtcggcgaagcgggaggc 499 |||||||||||||||| ||||||| Sbjct: 17593535 gagggcgtcggcgaagtgggaggc 17593558
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 516 ggctcgatgaagcggcagggcccgcaccaggaggcggagaagtcgatcacca 567 ||||| ||||| ||||| ||||||||||| || || ||||| || ||||||| Sbjct: 62091 ggctctatgaaccggcacggcccgcaccacgacgcagagaaatctatcacca 62142
>emb|X88892.1|CJVPI4YEL C.jacchus intron 4 of visual pigment gene (yellow allele) Length = 1821 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ggagcctcttgccactggga 253 |||||||||||||||||||| Sbjct: 854 ggagcctcttgccactggga 873
>gb|AY142333.1|AY142332S2 Callithrix geoffroyi 556nm X-linked opsin gene, exon 4 Length = 1322 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ggagcctcttgccactggga 253 |||||||||||||||||||| Sbjct: 1020 ggagcctcttgccactggga 1039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,037,656 Number of Sequences: 3902068 Number of extensions: 5037656 Number of successful extensions: 101341 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100328 Number of HSP's gapped (non-prelim): 1011 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
