>gb|AY111873.1| Zea mays CL29338_1 mRNA sequence
          Length = 1018

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 371 caggcatggatccagcaaaattctcccttggcaaaatttgcatcggcggtggatggcagt 430
           |||||||||||||||||    ||||||||||||| ||| | ||  |||||||| ||||||
Sbjct: 412 caggcatggatccagcagccctctcccttggcaagattgggatttgcggtggaaggcagt 471

                  
Query: 431 aaaatgg 437
           |||||||
Sbjct: 472 aaaatgg 478

>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 289   ggaggctggacacgagacggggtgaga 315
             |||||||||||| ||||||||||||||
Sbjct: 43957 ggaggctggacatgagacggggtgaga 43983

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 289      ggaggctggacacgagacggggtgaga 315
                |||||||||||| ||||||||||||||
Sbjct: 22448710 ggaggctggacatgagacggggtgaga 22448736

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 289      ggaggctggacacgagacggggtgaga 315
                |||||||||||| ||||||||||||||
Sbjct: 22441739 ggaggctggacatgagacggggtgaga 22441765

>gb|AC101661.7| Mus musculus chromosome 1, clone RP23-26A10, complete sequence
          Length = 228933

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 82     tgtacctgagaagacaactaaagaaagcaa 111
              ||||||||| ||| ||||||||||||||||
Sbjct: 197470 tgtacctgacaaggcaactaaagaaagcaa 197441

>emb|AL645669.11| Mouse DNA sequence from clone RP23-26A10 on chromosome 1 Contains part of
              the gene for ortholog of human amyotrophic lateral
              sclerosis 2 (juvenile) chromosome region candidate 19
              (ALS2CR19), complete sequence
          Length = 228932

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 82     tgtacctgagaagacaactaaagaaagcaa 111
              ||||||||| ||| ||||||||||||||||
Sbjct: 197469 tgtacctgacaaggcaactaaagaaagcaa 197440

>ref|XM_472831.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3720

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 240  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 284
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 3720 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3676

>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the
             5' end of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, the gene for a novel protein and a
             CpG island, complete sequence
          Length = 169693

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    ataccattctataatgtgctg 35
             |||||||||||||||||||||
Sbjct: 43831 ataccattctataatgtgctg 43811

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 240      tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 284
                ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 23529497 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 23529541

>dbj|AK120756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B14, full
            insert sequence
          Length = 4434

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 240  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 284
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 4126 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4082

>dbj|AK100883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127M15, full
            insert sequence
          Length = 4644

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 240  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 284
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 4359 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4315

>dbj|AK099564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M05, full
            insert sequence
          Length = 3444

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 240  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 284
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 3218 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3174

>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 240   tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 284
             ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 85400 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 85444

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    ccaaccatggggaaagcagg 374
              ||||||||||||||||||||
Sbjct: 788099 ccaaccatggggaaagcagg 788080

>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   ccaaccatggggaaagcagg 374
             ||||||||||||||||||||
Sbjct: 97047 ccaaccatggggaaagcagg 97028

>gb|AC079274.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-142L8, complete
             sequence
          Length = 113724

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   tggggaaagcaggcatggat 381
             ||||||||||||||||||||
Sbjct: 74198 tggggaaagcaggcatggat 74179

>gb|AC163898.5| Mus musculus chromosome 7, clone RP24-108A5, complete sequence
          Length = 143726

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aatgtaattaaaacactttg 67
              ||||||||||||||||||||
Sbjct: 110533 aatgtaattaaaacactttg 110514

>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    atctcattttcaagttctct 216
              ||||||||||||||||||||
Sbjct: 100629 atctcattttcaagttctct 100610

>ref|XM_820542.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 3', 5'-cyclic nucleotide
            phosphodiesterase (Tb927.3.3070) partial mRNA
          Length = 2730

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ccaaccatggggaaagcagg 374
            ||||||||||||||||||||
Sbjct: 1856 ccaaccatggggaaagcagg 1875

>gb|AC146509.2| Pan troglodytes BAC clone RP43-93E9 from X, complete sequence
          Length = 135272

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 509   gtggctcacttctgcattcaggag 532
             |||||||||||||||| |||||||
Sbjct: 74587 gtggctcacttctgcagtcaggag 74610

>emb|CR759945.8| Zebrafish DNA sequence from clone CH211-167E4 in linkage group 13,
             complete sequence
          Length = 146960

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ctataatgtgctgcaaattt 42
             ||||||||||||||||||||
Sbjct: 98547 ctataatgtgctgcaaattt 98566

>gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosome 15, complete
             sequence
          Length = 190750

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   tggcagtaaaatggcctgag 443
             ||||||||||||||||||||
Sbjct: 30150 tggcagtaaaatggcctgag 30131

>ref|XM_643029.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (557.t00002)
           partial mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 tgttgagagtcagacatctt 152
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

>ref|XM_646196.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (172.t00002) partial mRNA
          Length = 2397

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 tgttgagagtcagacatctt 152
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

>ref|XM_649852.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (40.t00005) partial mRNA
          Length = 2784

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 tgttgagagtcagacatctt 152
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

>ref|XM_650868.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (20.t00003) partial mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 tgttgagagtcagacatctt 152
           ||||||||||||||||||||
Sbjct: 125 tgttgagagtcagacatctt 106

>emb|Z85997.1|HSU101D3 Human DNA sequence from clone LL0XNC01-101D3 on chromosome X, complete
             sequence
          Length = 40600

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 509   gtggctcacttctgcattcaggag 532
             |||||||||||||||| |||||||
Sbjct: 20882 gtggctcacttctgcagtcaggag 20859

>gb|AC090099.14| Homo sapiens chromosome 11, clone RP11-113D6, complete sequence
          Length = 172939

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tgagaagacaactaaagaaa 107
             ||||||||||||||||||||
Sbjct: 12740 tgagaagacaactaaagaaa 12759

>gb|AC107948.7| Homo sapiens chromosome 11, clone RP11-81D23, complete sequence
          Length = 156839

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tgagaagacaactaaagaaa 107
             ||||||||||||||||||||
Sbjct: 90888 tgagaagacaactaaagaaa 90907

>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   aaatctcattttcaagttct 214
             ||||||||||||||||||||
Sbjct: 15093 aaatctcattttcaagttct 15074

>gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complete sequence
          Length = 197911

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tctcattttcaagttctctt 217
             ||||||||||||||||||||
Sbjct: 47540 tctcattttcaagttctctt 47521

>emb|Z33352.1|MCAAO M.capricolum DNA for CONTIG MCAAO
          Length = 1629

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   aagacaactaaagaaagcaa 111
            ||||||||||||||||||||
Sbjct: 1408 aagacaactaaagaaagcaa 1427

>emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, complete sequence
          Length = 171830

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ctataatgtgctgcaaattt 42
             ||||||||||||||||||||
Sbjct: 33786 ctataatgtgctgcaaattt 33767

>gb|AC153739.3| Aotus nancymaae clone CH258-485H7, complete sequence
          Length = 47312

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   acaaatctcattttcaagtt 212
             ||||||||||||||||||||
Sbjct: 36430 acaaatctcattttcaagtt 36411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,114,913
Number of Sequences: 3902068
Number of extensions: 5114913
Number of successful extensions: 93928
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93767
Number of HSP's gapped (non-prelim): 154
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)