ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK064543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 337 3e-89
2ref|XM_472796.1| Oryza sativa (japonica cultivar-group), predic... 329 6e-87
3emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 192 9e-46
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 192 9e-46
5emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 192 9e-46
6emb|AL356753.16| Human DNA sequence from clone RP11-481G8 on chr... 44 0.53
7gb|AC174609.3| Cavia porcellus clone CH234-34N9, complete sequence 42 2.1
8dbj|AP002774.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.1
9dbj|AP003125.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.1
10ref|NM_029355.1| Mus musculus prolactin-like protein N (Prlpn), ... 40 8.2
11gb|AC145906.2| Pan troglodytes BAC clone RP43-9J5 from 7, comple... 40 8.2
12emb|CR932322.1|CNS0KYLJ Paramecium tetraurelia macronuclear, put... 40 8.2
13emb|CR956391.5| Pig DNA sequence from clone PigE-133M12 on chrom... 40 8.2
14gb|AC164313.3| Mus musculus BAC clone RP23-24F12 from chromosome... 40 8.2
15gb|AF539893.1| Acrocera orbicula carbamoyl-phosphate synthase ge... 40 8.2
16emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chr... 40 8.2
17emb|AL359198.37| Human DNA sequence from clone RP11-402D21 on ch... 40 8.2
18emb|AL121582.19|HSBA280O9 Human DNA sequence from clone RP11-280... 40 8.2
19emb|AL645810.5| Zebrafish DNA sequence from clone BUSM1-37K09 Co... 40 8.2
20emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chro... 40 8.2
21gb|AC141561.5| Mus musculus BAC clone RP23-457C15 from chromosom... 40 8.2
22gb|AC112251.5| Homo sapiens BAC clone RP11-734I18 from 4, comple... 40 8.2
23gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11, comp... 40 8.2
24dbj|AK005458.1| Mus musculus adult female placenta cDNA, RIKEN f... 40 8.2
25gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete... 40 8.2
26gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene... 40 8.2
27gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, comple... 40 8.2
28gb|AC110994.8| Homo sapiens 3 BAC RP11-144C15 (Roswell Park Canc... 40 8.2
29gb|AF525156.1| Mus musculus placental prolactin-like protein-N m... 40 8.2
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.2
31dbj|BS000099.1| Pan troglodytes chromosome 22 clone:PTB-047E13, ... 40 8.2
32emb|CR931650.1| Streptococcus pneumoniae strain 423/82 (serotype... 40 8.2
33dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.2
34gb|AC102211.23| Mus musculus chromosome 3, clone RP24-369F14, co... 40 8.2
35emb|CR937009.1| uncultured archaeon fos0644c1 40 8.2
36emb|AL845166.8| Mouse DNA sequence from clone RP23-236H15 on chr... 40 8.2
37emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chr... 40 8.2

>dbj|AK064543.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A09, full
           insert sequence
          Length = 2112

 Score =  337 bits (170), Expect = 3e-89
 Identities = 302/346 (87%)
 Strand = Plus / Minus

                                                                       
Query: 246 ctccagttagcttaacgtatgataccccataagtccttgaaaatcatctggatttgatgg 305
           ||||||||||||||| |||||||| ||||||| ||||  || ||||||||| |||| |||
Sbjct: 533 ctccagttagcttaatgtatgatatcccataactcctccaatatcatctgggtttgttgg 474

                                                                       
Query: 306 tttatttccagatttaggtaaccatggaaatagcttggtaaggccttctcttgcagaatc 365
           | ||||||||| |||||||||||||||||| |  || || |||||||  ||| |||||||
Sbjct: 473 tctatttccaggtttaggtaaccatggaaacaatttagtgaggccttgcctttcagaatc 414

                                                                       
Query: 366 aggacccttttgtctaccattgaccccatatttttccctctcaatggcatccattatatc 425
           || |  || |||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 413 agcattctcttgtctaccattgaccccatatttctccctctcaattgcatccataatatc 354

                                                                       
Query: 426 ctcccgagccacaatatcgccacctcttcgagcagctagtagagcagcctcattaacaat 485
           ||||||||||||| ||| |||||| ||||||||||||||||  ||||||||||| |||||
Sbjct: 353 ctcccgagccacagtattgccaccccttcgagcagctagtaacgcagcctcattcacaat 294

                                                                       
Query: 486 gtttgctagatctgcaccaaccaatcctggggtcacattagcaaccagatcacaaattat 545
           |||||||||||| ||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 293 gtttgctagatccgcaccaaccaatcctggtgttaaactagcaaccagatcacaaattat 234

                                                         
Query: 546 ttcggaatcctcttctaaaggaacttttctgagatgaacagccaaa 591
           ||| | ||||||||| |||||||| |  || | |||||||||||||
Sbjct: 233 ttcaggatcctcttccaaaggaacgtcccttaaatgaacagccaaa 188



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>ref|XM_472796.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1755

 Score =  329 bits (166), Expect = 6e-87
 Identities = 298/342 (87%)
 Strand = Plus / Minus

                                                                        
Query: 252  ttagcttaacgtatgataccccataagtccttgaaaatcatctggatttgatggtttatt 311
            ||||||||| |||||||| ||||||| ||||  || ||||||||| |||| |||| ||||
Sbjct: 1755 ttagcttaatgtatgatatcccataactcctccaatatcatctgggtttgttggtctatt 1696

                                                                        
Query: 312  tccagatttaggtaaccatggaaatagcttggtaaggccttctcttgcagaatcaggacc 371
            ||||| |||||||||||||||||| |  || || |||||||  ||| ||||||||| |  
Sbjct: 1695 tccaggtttaggtaaccatggaaacaatttagtgaggccttgcctttcagaatcagcatt 1636

                                                                        
Query: 372  cttttgtctaccattgaccccatatttttccctctcaatggcatccattatatcctcccg 431
            || |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 1635 ctcttgtctaccattgaccccatatttctccctctcaattgcatccataatatcctcccg 1576

                                                                        
Query: 432  agccacaatatcgccacctcttcgagcagctagtagagcagcctcattaacaatgtttgc 491
            ||||||| ||| |||||| ||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 1575 agccacagtattgccaccccttcgagcagctagtaacgcagcctcattcacaatgtttgc 1516

                                                                        
Query: 492  tagatctgcaccaaccaatcctggggtcacattagcaaccagatcacaaattatttcgga 551
            |||||| ||||||||||||||||| || | | ||||||||||||||||||||||||| | 
Sbjct: 1515 tagatccgcaccaaccaatcctggtgttaaactagcaaccagatcacaaattatttcagg 1456

                                                      
Query: 552  atcctcttctaaaggaacttttctgagatgaacagccaaaat 593
            ||||||||| |||||||| |  || | |||||||||||||||
Sbjct: 1455 atcctcttccaaaggaacgtcccttaaatgaacagccaaaat 1414



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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
            complete sequence
          Length = 167988

 Score =  192 bits (97), Expect = 9e-46
 Identities = 178/205 (86%)
 Strand = Plus / Plus

                                                                        
Query: 246  ctccagttagcttaacgtatgataccccataagtccttgaaaatcatctggatttgatgg 305
            ||||||||||||||| |||||||| ||||||| ||||  || ||||||||| |||| |||
Sbjct: 833  ctccagttagcttaatgtatgatatcccataactcctccaatatcatctgggtttgttgg 892

                                                                        
Query: 306  tttatttccagatttaggtaaccatggaaatagcttggtaaggccttctcttgcagaatc 365
            | ||||||||| |||||||||||||||||| |  || || |||||||  ||| |||||||
Sbjct: 893  tctatttccaggtttaggtaaccatggaaacaatttagtgaggccttgcctttcagaatc 952

                                                                        
Query: 366  aggacccttttgtctaccattgaccccatatttttccctctcaatggcatccattatatc 425
            || |  || |||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 953  agcattctcttgtctaccattgaccccatatttctccctctcaattgcatccataatatc 1012

                                     
Query: 426  ctcccgagccacaatatcgccacct 450
            ||||||||||||| ||| |||||||
Sbjct: 1013 ctcccgagccacagtattgccacct 1037



 Score =  157 bits (79), Expect = 5e-35
 Identities = 127/143 (88%)
 Strand = Plus / Plus

                                                                        
Query: 451  cttcgagcagctagtagagcagcctcattaacaatgtttgctagatctgcaccaaccaat 510
            ||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 1361 cttcgagcagctagtaacgcagcctcattcacaatgtttgctagatccgcaccaaccaat 1420

                                                                        
Query: 511  cctggggtcacattagcaaccagatcacaaattatttcggaatcctcttctaaaggaact 570
            ||||| || | | ||||||||||||||||||||||||| | ||||||||| |||||||| 
Sbjct: 1421 cctggtgttaaactagcaaccagatcacaaattatttcaggatcctcttccaaaggaacg 1480

                                   
Query: 571  tttctgagatgaacagccaaaat 593
            |  || | |||||||||||||||
Sbjct: 1481 tcccttaaatgaacagccaaaat 1503



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  192 bits (97), Expect = 9e-46
 Identities = 178/205 (86%)
 Strand = Plus / Plus

                                                                            
Query: 246      ctccagttagcttaacgtatgataccccataagtccttgaaaatcatctggatttgatgg 305
                ||||||||||||||| |||||||| ||||||| ||||  || ||||||||| |||| |||
Sbjct: 23282834 ctccagttagcttaatgtatgatatcccataactcctccaatatcatctgggtttgttgg 23282893

                                                                            
Query: 306      tttatttccagatttaggtaaccatggaaatagcttggtaaggccttctcttgcagaatc 365
                | ||||||||| |||||||||||||||||| |  || || |||||||  ||| |||||||
Sbjct: 23282894 tctatttccaggtttaggtaaccatggaaacaatttagtgaggccttgcctttcagaatc 23282953

                                                                            
Query: 366      aggacccttttgtctaccattgaccccatatttttccctctcaatggcatccattatatc 425
                || |  || |||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 23282954 agcattctcttgtctaccattgaccccatatttctccctctcaattgcatccataatatc 23283013

                                         
Query: 426      ctcccgagccacaatatcgccacct 450
                ||||||||||||| ||| |||||||
Sbjct: 23283014 ctcccgagccacagtattgccacct 23283038



 Score =  157 bits (79), Expect = 5e-35
 Identities = 127/143 (88%)
 Strand = Plus / Plus

                                                                            
Query: 451      cttcgagcagctagtagagcagcctcattaacaatgtttgctagatctgcaccaaccaat 510
                ||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 23283362 cttcgagcagctagtaacgcagcctcattcacaatgtttgctagatccgcaccaaccaat 23283421

                                                                            
Query: 511      cctggggtcacattagcaaccagatcacaaattatttcggaatcctcttctaaaggaact 570
                ||||| || | | ||||||||||||||||||||||||| | ||||||||| |||||||| 
Sbjct: 23283422 cctggtgttaaactagcaaccagatcacaaattatttcaggatcctcttccaaaggaacg 23283481

                                       
Query: 571      tttctgagatgaacagccaaaat 593
                |  || | |||||||||||||||
Sbjct: 23283482 tcccttaaatgaacagccaaaat 23283504



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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
              complete sequence
          Length = 121337

 Score =  192 bits (97), Expect = 9e-46
 Identities = 178/205 (86%)
 Strand = Plus / Plus

                                                                          
Query: 246    ctccagttagcttaacgtatgataccccataagtccttgaaaatcatctggatttgatgg 305
              ||||||||||||||| |||||||| ||||||| ||||  || ||||||||| |||| |||
Sbjct: 120987 ctccagttagcttaatgtatgatatcccataactcctccaatatcatctgggtttgttgg 121046

                                                                          
Query: 306    tttatttccagatttaggtaaccatggaaatagcttggtaaggccttctcttgcagaatc 365
              | ||||||||| |||||||||||||||||| |  || || |||||||  ||| |||||||
Sbjct: 121047 tctatttccaggtttaggtaaccatggaaacaatttagtgaggccttgcctttcagaatc 121106

                                                                          
Query: 366    aggacccttttgtctaccattgaccccatatttttccctctcaatggcatccattatatc 425
              || |  || |||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 121107 agcattctcttgtctaccattgaccccatatttctccctctcaattgcatccataatatc 121166

                                       
Query: 426    ctcccgagccacaatatcgccacct 450
              ||||||||||||| ||| |||||||
Sbjct: 121167 ctcccgagccacagtattgccacct 121191



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>emb|AL356753.16| Human DNA sequence from clone RP11-481G8 on chromosome 10 Contains the
              5'end of a novel gene containing FLJ40930, gene FLJ35875,
              the RAI17 gene for retinoic acid induced 17, a novel gene
              and two CpG islands, complete sequence
          Length = 183460

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 330    tggaaatagcttggtaaggccttctc 355
              ||||||| ||||||||||||||||||
Sbjct: 151789 tggaaattgcttggtaaggccttctc 151764



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>gb|AC174609.3| Cavia porcellus clone CH234-34N9, complete sequence
          Length = 136141

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 523   ttagcaaccagatcacaaatt 543
             |||||||||||||||||||||
Sbjct: 17782 ttagcaaccagatcacaaatt 17762



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>dbj|AP002774.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-630P1, complete
              sequences
          Length = 143590

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 400    tccctctcaatggcatccatt 420
              |||||||||||||||||||||
Sbjct: 125316 tccctctcaatggcatccatt 125336



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>dbj|AP003125.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-642E8, complete
             sequence
          Length = 180711

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 400   tccctctcaatggcatccatt 420
             |||||||||||||||||||||
Sbjct: 13626 tccctctcaatggcatccatt 13646



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>ref|NM_029355.1| Mus musculus prolactin-like protein N (Prlpn), mRNA
          Length = 926

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 aggaacttttctgagatgaa 583
           ||||||||||||||||||||
Sbjct: 47  aggaacttttctgagatgaa 66



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>gb|AC145906.2| Pan troglodytes BAC clone RP43-9J5 from 7, complete sequence
          Length = 220120

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 555    ctcttctaaaggaacttttc 574
              ||||||||||||||||||||
Sbjct: 216235 ctcttctaaaggaacttttc 216216



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>emb|CR932322.1|CNS0KYLJ Paramecium tetraurelia macronuclear, putative gene for inositol
            1,4,5-triphosphate receptor n, isoform 2, complete gene
          Length = 9060

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 127  agatagacttgaattgtatatttt 150
            |||| |||||||||||||||||||
Sbjct: 1865 agatggacttgaattgtatatttt 1842



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>emb|CR956391.5| Pig DNA sequence from clone PigE-133M12 on chromosome 7, complete
             sequence
          Length = 168012

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   aaatcatctggatttgatgg 305
             ||||||||||||||||||||
Sbjct: 21974 aaatcatctggatttgatgg 21955



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>gb|AC164313.3| Mus musculus BAC clone RP23-24F12 from chromosome 3, complete sequence
          Length = 196368

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    agttgatgcttatctcttctgtgg 234
              ||||| ||||||||||||||||||
Sbjct: 191633 agttggtgcttatctcttctgtgg 191656



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>gb|AF539893.1| Acrocera orbicula carbamoyl-phosphate synthase gene, partial cds
          Length = 843

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 285 aaaatcatctggatttgatggtttattt 312
           |||||||| || ||||||||||||||||
Sbjct: 507 aaaatcatatgaatttgatggtttattt 534



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>emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chromosome 1 Contains part
              of a novel gene, complete sequence
          Length = 170639

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    ccccataagtccttgaaaat 289
              ||||||||||||||||||||
Sbjct: 149833 ccccataagtccttgaaaat 149814



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>emb|AL359198.37| Human DNA sequence from clone RP11-402D21 on chromosome 10 Contains a
              novel gene similar to brain-specific angiogenesis inhibitor
              3, the 5' end of the BTAF1 gene for BTAF1 RNA polymerase
              II, B-TFIID transcription factor-associated, 170kDa (Mot1
              homolog, S. cerevisiae) and a CpG island, complete sequence
          Length = 116342

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 62     tcaaaattcaccaaatggtgcacc 85
              ||||||||||||||||||| ||||
Sbjct: 110617 tcaaaattcaccaaatggtccacc 110594



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>emb|AL121582.19|HSBA280O9 Human DNA sequence from clone RP11-280O9 on chromosome 20 Contains part
             of the C20orf133 gene and the RNF11B gene for ring finger
             protein 11B pseudogene, complete sequence
          Length = 170908

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   tttttccctctcaatggcat 415
             ||||||||||||||||||||
Sbjct: 97710 tttttccctctcaatggcat 97729



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>emb|AL645810.5| Zebrafish DNA sequence from clone BUSM1-37K09 Contains the cntn2 gene
             (contactin 2), a transposase pseudogene and four CpG
             islands, complete sequence
          Length = 86708

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   catatttttccctctcaatg 411
             ||||||||||||||||||||
Sbjct: 36134 catatttttccctctcaatg 36115



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>emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chromosome 13 Contains the
              Prlpc2, Prlpe and Prlpf genes for prolactin-like proteins
              C2 (1600019F10RIK, Prlpc beta), E (Prlpg) and F (Plp-f),
              and genes 1600032B14RIK, 1600017L04RIK (3830403L08RIK) and
              1600014J19RIK for novel proteins similar to prolactin,
              complete sequence
          Length = 211776

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 564    aggaacttttctgagatgaa 583
              ||||||||||||||||||||
Sbjct: 139483 aggaacttttctgagatgaa 139464



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>gb|AC141561.5| Mus musculus BAC clone RP23-457C15 from chromosome 3, complete sequence
          Length = 169547

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    agttgatgcttatctcttctgtgg 234
              ||||| ||||||||||||||||||
Sbjct: 147239 agttggtgcttatctcttctgtgg 147262



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>gb|AC112251.5| Homo sapiens BAC clone RP11-734I18 from 4, complete sequence
          Length = 112537

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   gaaaatcatctggatttgat 303
             ||||||||||||||||||||
Sbjct: 39099 gaaaatcatctggatttgat 39080



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>gb|AC104447.2| Homo sapiens chromosome 3 clone RP11-447D11, complete sequence
          Length = 202544

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    accagtccactgccccactg 102
             ||||||||||||||||||||
Sbjct: 97886 accagtccactgccccactg 97905



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>dbj|AK005458.1| Mus musculus adult female placenta cDNA, RIKEN full-length enriched
           library, clone:1600014J19 product:prolactin-like protein
           N, full insert sequence
          Length = 926

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 aggaacttttctgagatgaa 583
           ||||||||||||||||||||
Sbjct: 47  aggaacttttctgagatgaa 66



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>gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete sequence
          Length = 136159

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 470    cagcctcattaacaatgttt 489
              ||||||||||||||||||||
Sbjct: 103701 cagcctcattaacaatgttt 103720



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>gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene region, part 1 of 2
          Length = 180000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 492    tagatctgcaccaaccaatcctgg 515
              |||||| |||||||||||||||||
Sbjct: 177754 tagatcggcaccaaccaatcctgg 177777



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>gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, complete sequence
          Length = 164798

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gccttctcttgcagaatcag 367
             ||||||||||||||||||||
Sbjct: 60718 gccttctcttgcagaatcag 60737



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>gb|AC110994.8| Homo sapiens 3 BAC RP11-144C15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 65203

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  cctctcaatggcatccatta 421
            ||||||||||||||||||||
Sbjct: 3689 cctctcaatggcatccatta 3670



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>gb|AF525156.1| Mus musculus placental prolactin-like protein-N mRNA, complete cds
          Length = 864

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 564 aggaacttttctgagatgaa 583
           ||||||||||||||||||||
Sbjct: 46  aggaacttttctgagatgaa 65



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 492     tagatctgcaccaaccaatcctgg 515
               |||||| |||||||||||||||||
Sbjct: 2056239 tagatcggcaccaaccaatcctgg 2056262



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>dbj|BS000099.1| Pan troglodytes chromosome 22 clone:PTB-047E13, map 22, complete
              sequences
          Length = 231583

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    tggtttatttccagatttag 322
              ||||||||||||||||||||
Sbjct: 221943 tggtttatttccagatttag 221962



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>emb|CR931650.1| Streptococcus pneumoniae strain 423/82 (serotype 10b)
          Length = 16991

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   tccttgaaaatcatctggat 298
             ||||||||||||||||||||
Sbjct: 12590 tccttgaaaatcatctggat 12571



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>dbj|AP003050.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-410I24, complete
             sequence
          Length = 152715

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   tatttttccctctcaatggc 413
             ||||||||||||||||||||
Sbjct: 71256 tatttttccctctcaatggc 71237



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>gb|AC102211.23| Mus musculus chromosome 3, clone RP24-369F14, complete sequence
          Length = 142790

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    agttgatgcttatctcttctgtgg 234
              ||||| ||||||||||||||||||
Sbjct: 105588 agttggtgcttatctcttctgtgg 105565



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>emb|CR937009.1| uncultured archaeon fos0644c1
          Length = 39253

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   cagtgcagtctccttcacagatag 132
             |||||||||||| |||||||||||
Sbjct: 38970 cagtgcagtctcgttcacagatag 38993



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>emb|AL845166.8| Mouse DNA sequence from clone RP23-236H15 on chromosome 2, complete
             sequence
          Length = 104990

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 558   ttctaaaggaacttttctgagatgaaca 585
             |||||||||||  |||||||||||||||
Sbjct: 44427 ttctaaaggaatatttctgagatgaaca 44400



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>emb|AL844210.7| Mouse DNA sequence from clone RP23-235I13 on chromosome X, complete
            sequence
          Length = 140246

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 285  aaaatcatctggatttgatggttt 308
            ||||| ||||||||||||||||||
Sbjct: 4639 aaaattatctggatttgatggttt 4616


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,457,536
Number of Sequences: 3902068
Number of extensions: 5457536
Number of successful extensions: 100332
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100232
Number of HSP's gapped (non-prelim): 100
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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