ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1c06 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 233 bits (594), Expect = 3e-61 Identities = 116/116 (100%), Positives = 116/116 (100%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL Sbjct: 836 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 895 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV Sbjct: 896 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 183 bits (464), Expect = 3e-46 Identities = 92/116 (79%), Positives = 105/116 (90%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR++LSG+AW+NLL NKTAFTTK++YGK EREAQWA AQRTLHGLQ PE + L Sbjct: 839 IMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEATN--L 896 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 FN+K+SYRELSEIAEQAKRRAE+ARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 897 FNEKNSYRELSEIAEQAKRRAEMARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 176 bits (447), Expect = 3e-44 Identities = 88/116 (75%), Positives = 102/116 (87%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 + KF IR+VLSG+AW NLL+NKTAFTTK++YGK EREAQWA AQRTLHGLQ E + + Sbjct: 835 LLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAE--KNNI 892 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 FN+K+SY ELS+IAEQAKRRAE+ RLRE+NTLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 893 FNEKNSYSELSQIAEQAKRRAEVVRLREINTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 174 bits (440), Expect = 2e-43 Identities = 85/116 (73%), Positives = 102/116 (87%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR+ LSGRAWDN+++NKTAFT+K++YGKGEREAQWA AQRTLHGLQ + + + Sbjct: 841 ILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSD--M 898 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 FNDKS+YRELSEIA+QAKRRAE+ARLRE +TLKGHVESVVK KGLDI+ I Q+YT+ Sbjct: 899 FNDKSTYRELSEIADQAKRRAEVARLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 171 bits (433), Expect = 1e-42 Identities = 81/116 (69%), Positives = 102/116 (87%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF R+ LSG+AW+N+++N+TAFTTK++YG+GEREAQWA AQRTLHGL+ PE ++ Sbjct: 838 ILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPE----SM 893 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F D ++Y ELSEIAEQAK+RAE+ARLRE++TLKGHVESVVKLKGLDID +NQ+YTV Sbjct: 894 FEDTATYTELSEIAEQAKKRAEVARLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 169 bits (429), Expect = 4e-42 Identities = 86/116 (74%), Positives = 98/116 (84%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR+ L+G+AWDN++ KTAFTTK++YGKGEREAQWA AQRTLHGL PE + Sbjct: 839 ILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE----AM 894 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 FND + ELSEIAEQAKRRAE+ARLREL+TLKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 895 FNDNKN--ELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 167 bits (423), Expect = 2e-41 Identities = 85/116 (73%), Positives = 97/116 (83%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR++LSG+AW +L N+TAFTTK++YG GEREAQWA AQRTLHGLQ E + + Sbjct: 835 ILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKEDVN--I 892 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F +K SYRELSEIAEQAKRRAEIARLREL+TLKGHVESV KLKGLDIDT +YTV Sbjct: 893 FPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 165 bits (417), Expect = 9e-41 Identities = 86/116 (74%), Positives = 99/116 (85%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 +FKF IR++LSG+AW NL +NKTAFT K++YGK EREAQWA AQRTLHGLQ E + + Sbjct: 835 VFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKEAVN--I 892 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F +K SYRELSEIAEQAKRRAEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 893 FPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 155 bits (391), Expect = 1e-37 Identities = 81/116 (69%), Positives = 95/116 (81%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR++L+G AW N++ N+TAFTTK+NYG EREAQWA AQRTLHGLQ E A+ + Sbjct: 836 IMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTETAN--V 893 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 ++ YRELSEIA QAKRRAEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 894 VPERGGYRELSEIANQAKRRAEIARLRELHTLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 154 bits (390), Expect = 1e-37 Identities = 76/116 (65%), Positives = 96/116 (82%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KFFIR+ LSGRAWD + + + AFT K+++GK +RE QWA AQRTLHGLQ P+ L Sbjct: 845 IIKFFIRYALSGRAWDLVFERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTK---L 901 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F++ +++ EL+++AE+AKRRAEIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 902 FSEATNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 153 bits (387), Expect = 3e-37 Identities = 74/116 (63%), Positives = 97/116 (83%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 + KF IR+ LSG+AWD +L+ + AFT K+++GK RE QWA AQRTLHGLQ P+P + Sbjct: 844 LIKFLIRYALSGKAWDLVLEQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPK---I 900 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F++ +++ EL+++AE+AKRRAEIARLREL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 901 FSETTNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 152 bits (383), Expect = 8e-37 Identities = 75/116 (64%), Positives = 96/116 (82%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR+ LSGRAWD +L+ + AFT K+++GK +RE QWA AQRTLHGLQ P+ L Sbjct: 592 IIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIK---L 648 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F++ +++ EL+++AE+AKRRAEIAR REL+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 649 FSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 151 bits (382), Expect = 1e-36 Identities = 74/116 (63%), Positives = 96/116 (82%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 I KF IR+ LSGRAWD +++ + AFT ++++GK +RE QWA AQRTLHGLQAP+ + Sbjct: 844 IIKFLIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAK---M 900 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 F +++ + ELS++AE+AKRRAEIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 901 FPERTHFNELSQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 151 bits (382), Expect = 1e-36 Identities = 74/114 (64%), Positives = 95/114 (83%) Frame = -2 Query: 561 KFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFN 382 KFFIR+ LSGRAWD +++ + AFT ++++GK +RE QWA AQRTLHGLQAP+ +F Sbjct: 850 KFFIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTK---MFT 906 Query: 381 DKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 D++ EL+++AE+AKRRAEIARLREL+TLKGHVESVV+LKGLDI+TI Q YTV Sbjct: 907 DRTHVSELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 150 bits (380), Expect = 2e-36 Identities = 72/113 (63%), Positives = 95/113 (84%) Frame = -2 Query: 558 FFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFND 379 F IR+ LSG+AWD +++ + AFT K+++GK +RE QWA AQRTLHGLQ P+P +F++ Sbjct: 847 FLIRYALSGKAWDLVIEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPK---IFSE 903 Query: 378 KSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 +++ EL+++AE+AKRRAEIARLREL+TLKGHVESVVKLKGLDI+TI Q YTV Sbjct: 904 TTNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 117 bits (294), Expect = 2e-26 Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Frame = -2 Query: 561 KFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFN 382 KF +R+ LSG++WD +++ +TA T K+N+G+ ER A WAT +RT HGL+ + + Sbjct: 851 KFLVRYALSGKSWDRMVEGRTALTGKKNFGQEERMAAWATEKRTQHGLETGQKPVY---- 906 Query: 381 DKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIN-QNYTV 220 +++S EL+ +AE+AKRRAEIAR+REL TLKG VES KLKG D++ N NYT+ Sbjct: 907 ERNSATELNNMAEEAKRRAEIARMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 78.2 bits (191), Expect = 2e-14 Identities = 46/116 (39%), Positives = 65/116 (56%) Frame = -2 Query: 567 IFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTL 388 + KF + LSG AW+ +L KTAFT K++YGK + +QR S + Sbjct: 843 VIKFVFHYALSGEAWNLVLDRKTAFTYKKDYGKDDGSPNVTISQR-----------SRSA 891 Query: 387 FNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 220 + S S IAEQ +RRAEIARL E++++ H+ESV+KLK +D I +TV Sbjct: 892 EELRGSRSRASWIAEQTRRRAEIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 43.9 bits (102), Expect = 3e-04 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = -2 Query: 459 EAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 289 E Q Q L +Q PEPA L D REL E + K+R E R REL LK Sbjct: 436 ETQVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALK 495 Query: 288 GHVESVVKLKGLDIDTINQNY 226 G ++ V + +++ + Q Y Sbjct: 496 GALKEEVASRDQEVEHVRQQY 516
>PMA_AVESA (Q7M290) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| (Fragments) Length = 110 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/38 (68%), Positives = 27/38 (71%) Frame = -2 Query: 447 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 334 A A +TLHGLQAPE S L NDK ELSEIAEQAK Sbjct: 77 APALKTLHGLQAPESTSLNLPNDK----ELSEIAEQAK 110
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 35.8 bits (81), Expect = 0.087 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Frame = -2 Query: 513 LQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAK 334 LQN +E + EAQ Q L Q+P+ +L D REL E + K Sbjct: 412 LQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGK 471 Query: 333 RRAE---IARLRELNTLKGHVESVVKLKGLDIDTINQNY 226 +R E R REL LKG ++ V +++ + Y Sbjct: 472 QRVEEQLRLRERELTALKGALKEEVASHDQEVEHVRLQY 510
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 30.8 bits (68), Expect = 2.8 Identities = 28/101 (27%), Positives = 44/101 (43%) Frame = -3 Query: 524 GTTSCRTRLLSPPKRTTAKVRGRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSL 345 G++S + P TT++ +HS +PHR L+ T SS+T VS S+ Sbjct: 115 GSSSSYVYSVPPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSST---DVSSSDSV 171 Query: 344 SKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTKTTP 222 S SS+++ T+S +TS S+ TP Sbjct: 172 STS---------ASSSNASNTVS-------VTSPASSSATP 196
>ASPP2_HUMAN (Q13625) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53-binding protein 2) (p53BP2) (53BP2) (Bcl2-binding protein) (Bbp) (NY-REN-51 antigen) Length = 1128 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 447 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 268 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 150 ATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQE-----AKLKKVRALKGHVEQKR 204 Query: 267 KLKGLDIDTINQ 232 G ++ I Q Sbjct: 205 LSNGKLVEEIEQ 216
>GCM2_MOUSE (O09102) Chorion-specific transcription factor GCMb (Glial cells| missing homolog 2) (GCM motif protein 2) (mGCMb) Length = 504 Score = 30.0 bits (66), Expect = 4.8 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = -2 Query: 429 LHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLD 250 +H PE S T + R+++ + KRR+E R ++GH+ S L+ + Sbjct: 156 VHDHPRPESKSETEGRRSALKRQMASFYQPQKRRSEEPEARSTQDIRGHLNSTAALEPTE 215 Query: 249 I 247 + Sbjct: 216 L 216
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 4.8 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -1 Query: 235 PKLHRVRNLGIGPNNMTSVLERDWNG 158 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 30.0 bits (66), Expect = 4.8 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Frame = -2 Query: 510 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYREL-SEIAEQAK 334 + K + + GK R + + RT P P SH+ +++SS+R S ++ + Sbjct: 79 RRKRSRSRSRGRGKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDR 138 Query: 333 RRAEIARLRELNTLKGHVESVVKLKGLDIDTI 238 R+ RE KG + V +K D I Sbjct: 139 RKVRDKEKREKEKDKGKDKEVHSIKRGDSGNI 170
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/58 (36%), Positives = 23/58 (39%) Frame = +3 Query: 366 GSCSCR*RVCGKPAQVLEGHGVFSVR*PTVPPSHLCRSSLWW*KQSCSAGGCPRPCHS 539 GSC C C KP G G S C+SS K SCS C +PC S Sbjct: 122 GSCGCSQCSCYKPCCCSSGCG-----------SSCCQSSCC--KPSCSQSSCCKPCCS 166
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 6.2 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -1 Query: 277 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 152 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1 Length = 2601 Score = 29.6 bits (65), Expect = 6.2 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Frame = -3 Query: 524 GTTSCRTRLLSPPKRTTAKVRGRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSL 345 GT S +R+ S T++ G P R +++ L+ HS + R+A +R+ Sbjct: 1815 GTESRSSRMGSQSSVTSSA--GSVPPAPRRAPAVSAASLAS-SAHSRSVRSAPA--MRAA 1869 Query: 344 SKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTKTTPCEEFGHWTKQHD-IRIGAR 168 S +R GS+ H G S S R + PS+ +TP G Q D +R+ AR Sbjct: 1870 SAGARSVRSAQSGSTGHRAGAFSVAGSVRQPSGPPSSVSTPAAIRGLTRDQFDAVRVRAR 1929
>ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53BP2) (53BP2) (Fragment) Length = 1088 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 447 ATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 268 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 110 ATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQE-----AKLKKVRALKGHVEQKR 164 Query: 267 KLKGLDIDTINQ 232 G ++ I Q Sbjct: 165 LSNGKLVEEIEQ 176
>SBE2_YEAST (P42223) Protein SBE2| Length = 864 Score = 29.6 bits (65), Expect = 6.2 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 17/131 (12%) Frame = -3 Query: 527 PGTTSCRTRLLSPPKRTTAKVRGRHSGLPHREHSMAFKHLSR---LPTHSSTTRAATVSF 357 PG+ +TR S +T + + +P R++S++ LSR LP S+TT + S Sbjct: 183 PGSILQKTRTASSADKTICSMSTITTCIPSRQNSVSTPKLSRTVGLPGSSNTTNSIAASQ 242 Query: 356 LRSLSKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTP--------------STKTTPC 219 +S+ L+ ++T L P +T TP +T+ TP Sbjct: 243 TSFISENDSPLKHHCMSTATIQEPKLMP------ITKTPYVHSNSTSVILPYKTTQLTPS 296 Query: 218 EEFGHWTKQHD 186 + + +Q+D Sbjct: 297 QRYRLRKEQND 307
>RNH2_SYNP7 (Q31PW0) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 215 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 461 GRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSLSKPREELRL 318 GRH G +H A L P H + FLRSL +P +++ L Sbjct: 174 GRHKGYGTAQHRQAILQLGPTPLH-------RIRFLRSLRQPSQQIDL 214
>RNH2_SYNP6 (Q5N4B8) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 215 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 461 GRHSGLPHREHSMAFKHLSRLPTHSSTTRAATVSFLRSLSKPREELRL 318 GRH G +H A L P H + FLRSL +P +++ L Sbjct: 174 GRHKGYGTAQHRQAILQLGPTPLH-------RIRFLRSLRQPSQQIDL 214
>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 828 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -2 Query: 492 TTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIAR 313 T KE Y K ++++W + T++ L+ +L S + + E+A ++ A Sbjct: 439 TVKEEYNKTVKQSEWDEMKATVNTLR-------SLNKTMKSQMQRMKDREKASQKEHSAV 491 Query: 312 LRELNTLKGHVESVV 268 EL TLK +E V Sbjct: 492 KTELKTLKDQLEKSV 506
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 29.3 bits (64), Expect = 8.1 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Frame = -3 Query: 491 PPKRTTAKVRGRHSGLPHREHSMAFKHLSRLPTHS------STTRAATVSFLRSLSKPRE 330 PP+R + GR S P R + SR + S S +R+ T S RS SK R Sbjct: 106 PPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRS 165 Query: 329 ELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTK 231 R + SS+ SR SR+ + P++K Sbjct: 166 ARRSKS-KSSSVSRSRSRSRSRSRSRSPPPTSK 197
>RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 29.3 bits (64), Expect = 8.1 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Frame = -2 Query: 510 QNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYREL-SEIAEQAK 334 + K + + GK R + + RT P P SH+ +++SS+R S ++ + Sbjct: 79 RRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDRDR 138 Query: 333 RRAEIARLRELNTLKGHVESVVKLKGLDIDTI 238 R+ RE KG + +K D I Sbjct: 139 RKVRDKEKREKEKDKGKDKEAHTIKRGDCGNI 170
>CHSS2_MOUSE (Q6IQX7) Chondroitin sulfate synthase 2 (EC 2.4.1.175)| (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II) (EC 2.4.1.226) (Chon Length = 774 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -1 Query: 568 HFQVLHPICAEWQGLGQPPAEQDCFHHQRE 479 HFQ HP A QG G P +D H R+ Sbjct: 642 HFQAFHPAVAPPQGPGPPELGRDTGHFDRQ 671 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,941,462 Number of Sequences: 219361 Number of extensions: 1673140 Number of successful extensions: 4628 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4609 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
