ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1c03 |
|---|---|
| Clone Library Name | barley_pub |
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -1 Query: 212 GEAPFGSTDIKKKRLYEVLGPLVLFRLVISXSVTM-----ICQY*NCETGMYXM 66 G P+ +T+ + K ++ +GP+V FRLV C+Y + ET + M Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -1 Query: 212 GEAPFGSTDIKKKRLYEVLGPLVLFRLVISXSVTM-----ICQY*NCETGMYXM 66 G P+ +T+ + K ++ +GP+V FRLV C+Y + ET + M Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -1 Query: 212 GEAPFGSTDIKKKRLYEVLGPLVLFRLVISXSVTM-----ICQY*NCETGMYXM 66 G P+ +T+ + K ++ +GP+V FRLV C+Y + ET + M Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -1 Query: 212 GEAPFGSTDIKKKRLYEVLGPLVLFRLVISXSVTM-----ICQY*NCETGMYXM 66 G P+ +T+ + K ++ +GP+V FRLV C+Y + ET + M Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>MEIS1_XENLA (P79937) Homeobox protein Meis1 (XMeis1)| Length = 390 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 401 GDVHGARCLPSLLHLRHAPP 342 GD H AR + S+ HL H PP Sbjct: 25 GDPHAARSMKSVHHLNHGPP 44
>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)| Length = 401 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/26 (50%), Positives = 13/26 (50%) Frame = -1 Query: 386 ARCLPSLLHLRHAPPG*PSVPPVQEP 309 A CLP L H H PP P PP P Sbjct: 60 APCLPPLAHHPHLPPHPPPPPPPPPP 85
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = -1 Query: 386 ARCLPSLLHLRHAPPG*PSVPPVQEPRAP 300 A CLP L H H PP P PP Q AP Sbjct: 62 APCLPPLAHHPHLPPH-PPPPPPQHLAAP 89
>DCW1_ASHGO (Q75DG6) Mannan endo-1,6-alpha-mannosidase DCW1 precursor (EC| 3.2.1.101) (Endo-alpha-1->6-D-mannanase DCW1) (Defective cell wall 1) Length = 451 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 289 AGSQGARGSCTGGTEGH 339 A +QGA SC+GG +GH Sbjct: 340 ASAQGAAASCSGGRDGH 356
>DNJA3_HUMAN (Q96EY1) DnaJ homolog subfamily A member 3, mitochondrial precursor| (Tumorous imaginal discs protein Tid56 homolog) (DnaJ protein Tid-1) (hTid-1) Length = 480 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 384 SLPALAASSTSCSPRMTLGAPSARAPCSLTSCK 286 S+PA A+S TSC PR L + R SLT K Sbjct: 44 SVPAFASSLTSCGPRALL---TLRPGVSLTGTK 73
>MYCL1_HUMAN (P12524) L-myc-1 proto-oncogene protein| Length = 364 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -3 Query: 378 PALAASSTSCSPRMTLGAPSARAPCSL 298 P A+++ C+P + G P+ APC L Sbjct: 122 PPKASAAPDCTPSLEAGNPAPAAPCPL 148
>MEIS2_MOUSE (P97367) Homeobox protein Meis2 (Meis1-related protein 1)| Length = 477 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 401 GDVHGARCLPSLLHLRHAPP 342 GD H R +P + HL H PP Sbjct: 25 GDPHAPRPIPPVHHLNHGPP 44
>MEIS2_HUMAN (O14770) Homeobox protein Meis2 (Meis1-related protein 1)| Length = 477 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 401 GDVHGARCLPSLLHLRHAPP 342 GD H R +P + HL H PP Sbjct: 25 GDPHAPRPIPPVHHLNHGPP 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,135,587 Number of Sequences: 219361 Number of extensions: 729914 Number of successful extensions: 2331 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2330 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
