ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 753 0.0
2emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 515 e-143
3dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
4dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
5dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
6gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 214 2e-52
7gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 206 4e-50
8gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 167 4e-38
9gb|AY104072.1| Zea mays PCO110104 mRNA sequence 143 5e-31
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
11dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
12ref|XM_477421.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
15dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
16gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 50 0.006
17emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chro... 48 0.024
18gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 46 0.095
19gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.38
20gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.38
21gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.38
22ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 ... 42 1.5
23gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete... 42 1.5
24emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 42 1.5
25gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 1.5
26gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromo... 42 1.5
27emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Co... 42 1.5
28emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Co... 42 1.5
29gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 1.5
30gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 5.9
31gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete se... 40 5.9
32ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.9
33gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 5.9
34emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
35emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
36gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 40 5.9
37gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 40 5.9 
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  753 bits (380), Expect = 0.0
 Identities = 424/438 (96%), Gaps = 3/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatggttctttcattaagnnggtactggnatgatatcctctgnattatggnacgcaaca 60
           |||||||||||||||||||  |||||||| ||||||||||||| ||||||| ||||||||
Sbjct: 460 acatggttctttcattaaga-ggtactgg-atgatatcctctgaattatgg-acgcaaca 404

                                                                       
Query: 61  acattactgaatgcttgaaataggtttgcacttgaccacaacagtttctaatagcgagtc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 403 acattactgaatgcttgaaataggtttgcacttgaccacaacagttgctaatagcgagtc 344

                                                                       
Query: 121 acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 284

                                                                       
Query: 181 atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 224

                                                                       
Query: 241 ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctgacttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctgacttct 164

                                                                       
Query: 301 gggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggcgacgcccgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggcgacgcccgtc 104

                                                                       
Query: 361 gccgcgaagagcggntacacctcgnnacggacccacttgctgnccatcgnagtcgcgcgc 420
           |||||||||||||| |||||||||  |||||||||||||||| |||||| ||||||||||
Sbjct: 103 gccgcgaagagcgggtacacctcgggacggacccacttgctggccatcggagtcgcgcgc 44

                             
Query: 421 gnnnatgacgctgcgccg 438
           |   ||||||||||||||
Sbjct: 43  ggggatgacgctgcgccg 26
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>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  515 bits (260), Expect = e-143
 Identities = 288/294 (97%), Gaps = 3/294 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    acatggttctttcattaagnnggtactggnatgatatcctctgnattatggnacgcaaca 60
            |||||||||||||||||||  |||||||| ||||||||||||| ||||||| ||||||||
Sbjct: 1602 acatggttctttcattaaga-ggtactgg-atgatatcctctgaattatgg-acgcaaca 1546

                                                                        
Query: 61   acattactgaatgcttgaaataggtttgcacttgaccacaacagtttctaatagcgagtc 120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1545 acattactgaatgcttgaaataggtttgcacttgaccacaacagttgctaatagcgagtc 1486

                                                                        
Query: 121  acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 1426

                                                                        
Query: 181  atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 1366

                                                                  
Query: 241  ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctg 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctg 1312



 Score =  176 bits (89), Expect = 4e-41
 Identities = 91/92 (98%)
 Strand = Plus / Minus

                                                                       
Query: 291 cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 594

                                           
Query: 351 gacgcccgtcgccgcgaagagcggntacacct 382
           |||||||||||||||||||||||| |||||||
Sbjct: 593 gacgcccgtcgccgcgaagagcgggtacacct 562



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 378 cacctcgnnacggacccacttgctgnccatcgnagtcgcgcgcgnnnatgacgctgcgcc 437
           |||||||  |||||||||||||||| |||||| |||||||||||   |||||||||||||
Sbjct: 485 cacctcgggacggacccacttgctggccatcggagtcgcgcgcggggatgacgctgcgcc 426

            
Query: 438 g 438
           |
Sbjct: 425 g 425
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>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  214 bits (108), Expect = 2e-52
 Identities = 197/227 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 328 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 269

                                                                       
Query: 217 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 268 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 209

                                                                       
Query: 277 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 336
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 208 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 149

                                                          
Query: 337 cagatgccgatggcgacgcccgtcgccgcgaagagcggntacacctc 383
           |||||||||| ||| |||||| |||||||||| ||||| ||||||||
Sbjct: 148 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctc 102
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>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  214 bits (108), Expect = 2e-52
 Identities = 197/227 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 325 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 266

                                                                       
Query: 217 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 265 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 206

                                                                       
Query: 277 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 336
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 205 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 146

                                                          
Query: 337 cagatgccgatggcgacgcccgtcgccgcgaagagcggntacacctc 383
           |||||||||| ||| |||||| |||||||||| ||||| ||||||||
Sbjct: 145 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctc 99
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>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  214 bits (108), Expect = 2e-52
 Identities = 197/227 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 322 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 263

                                                                       
Query: 217 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 262 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 203

                                                                       
Query: 277 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 336
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 202 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 143

                                                          
Query: 337 cagatgccgatggcgacgcccgtcgccgcgaagagcggntacacctc 383
           |||||||||| ||| |||||| |||||||||| ||||| ||||||||
Sbjct: 142 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctc 96
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>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  214 bits (108), Expect = 2e-52
 Identities = 197/227 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 294 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 235

                                                                       
Query: 217 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 234 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 175

                                                                       
Query: 277 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 336
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 174 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 115

                                                          
Query: 337 cagatgccgatggcgacgcccgtcgccgcgaagagcggntacacctc 383
           |||||||||| ||| |||||| |||||||||| ||||| ||||||||
Sbjct: 114 cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctc 68
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>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score =  206 bits (104), Expect = 4e-50
 Identities = 196/227 (86%)
 Strand = Plus / Minus

                                                                       
Query: 157 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
           ||||| |||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 265 gtgaaaaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 206

                                                                       
Query: 217 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 205 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 146

                                                                       
Query: 277 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctgaaggcg 336
           || | |||| | ||||||||||| |||||||||||||||||||||| |||   |||| ||
Sbjct: 145 cctaccttgttaaccctgacttcggggttgccggtgatgttgcggaagagctggaagccg 86

                                                          
Query: 337 cagatgccgatggcgacgcccgtcgccgcgaagagcggntacacctc 383
           |||||||||| ||| |||||| |||||||||| ||||| ||||||||
Sbjct: 85  cagatgccgacggccacgcccatcgccgcgaacagcgggtacacctc 39
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>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  167 bits (84), Expect = 4e-38
 Identities = 200/237 (84%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 aagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctgagg 219
           ||||||||||||||  ||||||||||||||||||||||||| |||||  ||  |||||||
Sbjct: 483 aagaacttgttgatagctggcatgatctcgggggtcttgtcgtgcacaaagcttctgagg 424

                                                                       
Query: 220 ccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctcccc 279
           || |||  |||||| ||||| ||||||||||||||||||||||| || ||||||||||| 
Sbjct: 423 ccatgcatggcgtaacgcctcccctcctcatggttctcaagcacgccggctgccctccct 364

                                                                       
Query: 280 atcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctg-aaggcgca 338
             |||| | ||||||||||| ||||||||||||||||| |||| || |||| ||  ||||
Sbjct: 363 gccttgtttaccctgacttccgggttgccggtgatgttccggaaga-gctgaaacccgca 305

                                                                    
Query: 339 gatgccgatggcgacgcccgtcgccgcgaagagcggntacacctcgnnacggaccca 395
           |||||| | ||| || ||| |||||||||| || || |||||||||   ||||||||
Sbjct: 304 gatgccaacggcaactcccatcgccgcgaacagggggtacacctcgggtcggaccca 248
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>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score =  143 bits (72), Expect = 5e-31
 Identities = 190/227 (83%), Gaps = 2/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 157 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
           |||||||||||||| | | | ||||||||||| || |||||||| |||||  ||  ||| 
Sbjct: 359 gtgaagaacttgttaactgcaggcatgatctcaggagtcttgtcgtgcacaaagcttctt 300

                                                                       
Query: 217 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
           ||||| |||  |||||| || || ||||||||||||||||||||||| || |||||||||
Sbjct: 299 aggccatgcatggcgtaacgtctcccctcctcatggttctcaagcacaccagctgccctc 240

                                                                       
Query: 277 cccatcttgctgaccctgacttctgggttgccggtgatgttgcggaggaggctg-aaggc 335
           ||   |||| | ||||||||||| |||||||| |||||||| |||| || |||| ||  |
Sbjct: 239 cctgccttgtttaccctgacttccgggttgccagtgatgttccggaaga-gctgaaaccc 181

                                                          
Query: 336 gcagatgccgatggcgacgcccgtcgccgcgaagagcggntacacct 382
           ||||||||||| ||| ||||||||||||||||| ||||| |||||||
Sbjct: 180 gcagatgccgacggccacgcccgtcgccgcgaacagcgggtacacct 134
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                           
Query: 157     gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
               |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 7602745 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 7602804

                                                                           
Query: 217     aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
               || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 7602805 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 7602864

                                  
Query: 277     cccatcttgctgaccctga 295
               || | |||| | |||||||
Sbjct: 7602865 cctaccttgttaaccctga 7602883



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                           
Query: 291     cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 350
               ||||||||| |||||||||||||||||||||| |||   |||| |||||||||||| |||
Sbjct: 7603858 cctgacttcggggttgccggtgatgttgcggaagagctggaagccgcagatgccgacggc 7603917

                                               
Query: 351     gacgcccgtcgccgcgaagagcggntacacct 382
                |||||| |||||||||| ||||| |||||||
Sbjct: 7603918 cacgcccatcgccgcgaacagcgggtacacct 7603949
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                         
Query: 157   gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 216
             |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 26000 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 26059

                                                                         
Query: 217   aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 276
             || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 26060 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 26119

                                
Query: 277   cccatcttgctgaccctga 295
             || | |||| | |||||||
Sbjct: 26120 cctaccttgttaaccctga 26138



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                         
Query: 291   cctgacttctgggttgccggtgatgttgcggaggaggctgaaggcgcagatgccgatggc 350
             ||||||||| |||||||||||||||||||||| |||   |||| |||||||||||| |||
Sbjct: 27113 cctgacttcggggttgccggtgatgttgcggaagagctggaagccgcagatgccgacggc 27172

                                             
Query: 351   gacgcccgtcgccgcgaagagcggntacacct 382
              |||||| |||||||||| ||||| |||||||
Sbjct: 27173 cacgcccatcgccgcgaacagcgggtacacct 27204
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>ref|XM_477421.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 297

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 289 accctgacttctgggttgccggtgatgttgcgga 322
           ||||||||||| ||||||||||||||||||||||
Sbjct: 146 accctgacttcggggttgccggtgatgttgcgga 113
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 291      cctgacttctgggttgccggtgatgttgcgga 322
                ||||||||| ||||||||||||||||||||||
Sbjct: 10264380 cctgacttcggggttgccggtgatgttgcgga 10264349
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>dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0032G22
          Length = 127365

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                              
Query: 291    cctgacttctgggttgccggtgatgttgcgga 322
              ||||||||| ||||||||||||||||||||||
Sbjct: 123117 cctgacttcggggttgccggtgatgttgcgga 123086
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>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1029H08
          Length = 137050

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 291   cctgacttctgggttgccggtgatgttgcgga 322
             ||||||||| ||||||||||||||||||||||
Sbjct: 86299 cctgacttcggggttgccggtgatgttgcgga 86268
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>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 157 gtgaagaacttgttgattcctggcatgat 185
           |||||||||||||||||||| ||||||||
Sbjct: 310 gtgaagaacttgttgattccaggcatgat 282
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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 281    tcttgctgaccctgacttctgggt 304
              ||||||||||||||||||||||||
Sbjct: 130420 tcttgctgaccctgacttctgggt 130397
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>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 163   aacttgttgattcctggcatgat 185
             |||||||||||||||||||||||
Sbjct: 15085 aacttgttgattcctggcatgat 15107
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>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 238   ctgccctcctcatggttctcaagcac 263
             |||||||||||||||||| |||||||
Sbjct: 39836 ctgccctcctcatggttcacaagcac 39861
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>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 238   ctgccctcctcatggttctcaagcac 263
             |||||||||||||||||| |||||||
Sbjct: 10630 ctgccctcctcatggttcacaagcac 10605
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 341     tgccgatggcgacgcccgtcgccgcg 366
               |||||||||||||||||| |||||||
Sbjct: 1067557 tgccgatggcgacgcccgccgccgcg 1067582
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>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds
          Length = 588

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 157 gtgaagaacttgttgattcctggcatgat 185
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
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>gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete sequence
          Length = 81854

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   tcctgctgccctccccatctt 284
             |||||||||||||||||||||
Sbjct: 46605 tcctgctgccctccccatctt 46585
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>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 157   gtgaagaacttgttgattcctggcatgat 185
             |||||||||||||||| ||| ||||||||
Sbjct: 12996 gtgaagaacttgttgagtccaggcatgat 12968
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>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 558

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 157 gtgaagaacttgttgattcctggcatgat 185
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
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>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete
            sequence
          Length = 162075

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 264  tcctgctgccctccccatctt 284
            |||||||||||||||||||||
Sbjct: 3856 tcctgctgccctccccatctt 3876
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>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 157 gtgaagaacttgttgattcctggcatgat 185
           |||||||||||||||| ||| ||||||||
Sbjct: 304 gtgaagaacttgttgagtccaggcatgat 276
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>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 515

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 157 gtgaagaacttgttgattcctggcatgat 185
           |||||||||||||||| ||| ||||||||
Sbjct: 212 gtgaagaacttgttgagtccaggcatgat 240
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>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 350

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 157 gtgaagaacttgttgattcctggcatgat 185
           |||||||||||||||| ||| ||||||||
Sbjct: 251 gtgaagaacttgttgagtccaggcatgat 223
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 88      gcacttgaccacaacagttt 107
               ||||||||||||||||||||
Sbjct: 1954948 gcacttgaccacaacagttt 1954929
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>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence
          Length = 39974

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   agcactcctgctgccctccc 278
             ||||||||||||||||||||
Sbjct: 18360 agcactcctgctgccctccc 18341
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>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 ttctcaagcactcctgctgc 272
           ||||||||||||||||||||
Sbjct: 917 ttctcaagcactcctgctgc 898
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>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 105   tttctaatagcgagtcacagacagacag 132
             ||||||| ||||||||||||||| ||||
Sbjct: 18855 tttctaaaagcgagtcacagacacacag 18882
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gccgtgctcggcgtagcgcc 238
             ||||||||||||||||||||
Sbjct: 58257 gccgtgctcggcgtagcgcc 58276
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gccgtgctcggcgtagcgcc 238
             ||||||||||||||||||||
Sbjct: 21961 gccgtgctcggcgtagcgcc 21942
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>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 265    cctgctgccctccccatcttgctg 288
              |||||||||||||||| |||||||
Sbjct: 117817 cctgctgccctccccaccttgctg 117794
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>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  gccgtgctcggcgtagcgcc 238
            ||||||||||||||||||||
Sbjct: 4564 gccgtgctcggcgtagcgcc 4545


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,176,387
Number of Sequences: 3902068
Number of extensions: 3176387
Number of successful extensions: 83483
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83336
Number of HSP's gapped (non-prelim): 142
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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