Clone Information

BLAST Search Result

Clone Name	rbasd1b24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
2	dbj\|AP004584.3\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
3	dbj\|AK120061.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
4	dbj\|AK061846.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
5	gb\|AY104446.1\| Zea mays PCO085677 mRNA sequence	86	2e-13
6	emb\|BX005229.30\| Zebrafish DNA sequence from clone DKEY-21D17 in...	50	0.009
7	emb\|BX927356.22\| Zebrafish DNA sequence from clone DKEY-54K20 in...	50	0.009
8	gb\|AC163350.4\| Mus musculus BAC clone RP23-186B12 from chromosom...	42	2.2
9	emb\|BX296551.4\| Zebrafish DNA sequence from clone CH211-224L10 i...	42	2.2
10	gb\|AC004169.3\|AC004169 Homo sapiens chromosome 4 clone C0236G06 ...	42	2.2
11	ref\|XM_471173.1\| Oryza sativa (japonica cultivar-group), predic...	40	8.7
12	ref\|NM_191074.1\| Oryza sativa (japonica cultivar-group), predic...	40	8.7
13	ref\|XM_414616.1\| PREDICTED: Gallus gallus similar to Chromosome ...	40	8.7
14	gb\|AC149132.1\| Pan troglodytes chromosome X clone PTB-099J01 map...	40	8.7
15	gb\|BT014575.1\| Lycopersicon esculentum clone 134030R, mRNA sequence	40	8.7
16	ref\|XM_846688.1\| PREDICTED: Canis familiaris similar to A-kinase...	40	8.7
17	emb\|CR626889.13\| Zebrafish DNA sequence from clone DKEY-4P15 in ...	40	8.7
18	gb\|AC099511.5\| Homo sapiens chromosome 16 clone RP11-293N14, com...	40	8.7
19	gb\|AC117251.3\| Mus musculus BAC clone RP24-372C12 from chromosom...	40	8.7
20	gb\|AC091296.3\| Pan troglodytes clone RP43-109G19, complete sequence	40	8.7
21	gb\|AC121773.3\| Mus musculus BAC clone RP23-349P14 from chromosom...	40	8.7
22	emb\|CR394544.15\| Zebrafish DNA sequence from clone DKEY-117I6 in...	40	8.7
23	emb\|AL807772.12\| Human DNA sequence from clone RP11-188G3 on chr...	40	8.7
24	emb\|CR381700.6\| Zebrafish DNA sequence from clone CH211-198F4 in...	40	8.7
25	gb\|CP000142.2\| Pelobacter carbinolicus DSM 2380, complete genome	40	8.7
26	emb\|AL732629.6\| Zebrafish DNA sequence from clone CH211-146F4 in...	40	8.7
27	gb\|AC019288.8\| Homo sapiens chromosome 15, clone RP11-139F4, com...	40	8.7
28	emb\|AJ621739.1\| Gallus gallus partial KIF3A gene for kinesin-lik...	40	8.7
29	gb\|AC091708.2\| Gallus gallus clone XXbac-68C5, complete sequence	40	8.7
30	dbj\|AP003570.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
31	gb\|AC021660.16\| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Canc...	40	8.7
32	gb\|AC113366.2\| Homo sapiens chromosome 5 clone RP11-109F5, compl...	40	8.7
33	gb\|AC007171.5\| Arabidopsis thaliana chromosome 2 clone T8O18 map...	40	8.7
34	gb\|AC163701.4\| Gallus gallus BAC clone CH261-117C7 from chromoso...	40	8.7
35	gb\|AC005231.3\| Homo sapiens PAC clone RP5-1186P10 from 7, comple...	40	8.7
36	gb\|AC010437.7\|AC010437 Homo sapiens chromosome 5 clone CTD-2217J...	40	8.7
37	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
38	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
39	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
40	gb\|AC092379.4\| Homo sapiens chromosome 16 clone RP11-707E24, com...	40	8.7
41	dbj\|AP004331.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
42	dbj\|AP005546.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
43	emb\|BX119966.7\| Zebrafish DNA sequence from clone CH211-266N15, ...	40	8.7
44	dbj\|AK103158.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.7
45	emb\|AL662985.3\|OSJN00189 Oryza sativa genomic DNA, chromosome 4,...	40	8.7
46	gb\|AC159985.2\| Gallus gallus BAC clone CH261-18F10 from chromoso...	40	8.7
47	emb\|CR925745.5\| Zebrafish DNA sequence from clone DKEYP-100G5 in...	40	8.7
48	emb\|AL833774.4\| Mouse DNA sequence from clone RP23-383I16 on chr...	40	8.7

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                          
Query: 232    agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 291
              ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 571649 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 571590

                                                                          
Query: 292    atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 351
              ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 571589 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 571533

                                                                          
Query: 352    tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 411
              |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 571532 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 571473

                 
Query: 412    tcc 414
              |||
Sbjct: 571472 tcc 571470



 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                          
Query: 410    tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 469
              ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 571441 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 571382

                                                                          
Query: 470    tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 529
              ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 571381 tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 571322

                               
Query: 530    acatagccgccttgctg 546
               ||||||| ||||||||
Sbjct: 571321 gcatagccaccttgctg 571305



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 74/89 (83%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 551    tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgg 610
              |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  |||| |
Sbjct: 571288 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgct-g 571230

                                           
Query: 611    cgggtagccctgctgagcatacccatcag 639
               ||||| | |||||||| |||||||||||
Sbjct: 571229 tgggtaactctgctgagaatacccatcag 571201

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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                          
Query: 232    agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 291
              ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 161609 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 161550

                                                                          
Query: 292    atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 351
              ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 161549 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 161493

                                                                          
Query: 352    tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 411
              |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 161492 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 161433

                 
Query: 412    tcc 414
              |||
Sbjct: 161432 tcc 161430



 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                          
Query: 410    tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 469
              ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 161401 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 161342

                                                                          
Query: 470    tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 529
              ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 161341 tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 161282

                               
Query: 530    acatagccgccttgctg 546
               ||||||| ||||||||
Sbjct: 161281 gcatagccaccttgctg 161265



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 74/89 (83%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 551    tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgg 610
              |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  |||| |
Sbjct: 161248 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgct-g 161190

                                           
Query: 611    cgggtagccctgctgagcatacccatcag 639
               ||||| | |||||||| |||||||||||
Sbjct: 161189 tgggtaactctgctgagaatacccatcag 161161

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>dbj|AK120061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I23, full
            insert sequence
          Length = 4843

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 232  agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 291
            ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 4560 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 4501

                                                                        
Query: 292  atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 351
            ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 4500 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 4444

                                                                        
Query: 352  tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 411
            |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 4443 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 4384

               
Query: 412  tcc 414
            |||
Sbjct: 4383 tcc 4381



 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Minus

                                                                        
Query: 410  tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 469
            ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 4352 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 4293

                                                                        
Query: 470  tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 529
            ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 4292 tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 4233

                             
Query: 530  acatagccgccttgctg 546
             ||||||| ||||||||
Sbjct: 4232 gcatagccaccttgctg 4216



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 74/89 (83%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 551  tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgg 610
            |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  |||| |
Sbjct: 4199 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgct-g 4141

                                         
Query: 611  cgggtagccctgctgagcatacccatcag 639
             ||||| | |||||||| |||||||||||
Sbjct: 4140 tgggtaactctgctgagaatacccatcag 4112

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>dbj|AK061846.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F02, full
            insert sequence
          Length = 1569

 Score =  145 bits (73), Expect = 2e-31
 Identities = 156/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 232  agcaggctgaggcgacacgcccttagcaaccgcaggctgtgggtttgcagcaggtgcagc 291
            ||||||||| || ||||| ||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 1252 agcaggctgcggtgacaccccctttgcaacagcaggctgtgggtttgcaggaggtgcagc 1193

                                                                        
Query: 292  atagccactttgagctgctggtggtgcagactgatcataacttggcggatttgtagctgg 351
            ||||||||| ||||||| |||  | |||||||||||||||  ||| |||||||||   ||
Sbjct: 1192 atagccactctgagctggtggctgggcagactgatcataagctggtggatttgta---gg 1136

                                                                        
Query: 352  tggctgggtgtatcctgcctgaccatatccaggctgaccacttgtcggtgcagcagcata 411
            |||||| |||||||||| |||||| || || ||||| |||   | |||||||||||||||
Sbjct: 1135 tggctgagtgtatcctggctgaccgtaccctggctggccagcagccggtgcagcagcata 1076

               
Query: 412  tcc 414
            |||
Sbjct: 1075 tcc 1073



 Score =  123 bits (62), Expect = 8e-25
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                        
Query: 410  tatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataacca 469
            ||||||| ||||||||||||||| |||||||||||||| || || || ||||| || || 
Sbjct: 1044 tatcctgcctgtgggtaggcatttccatagttgggatctgctggagcaccctggtagccg 985

                                                                        
Query: 470  tagtttgcattgttttgagctgactgatcaccatatgctggctgcgatgcaggatactgc 529
            ||||||||||||||||||||||  ||||||||||||||||| || |||  ||||||||| 
Sbjct: 984  tagtttgcattgttttgagctgcttgatcaccatatgctggttgggattgaggatactgt 925

                          
Query: 530  acatagccgccttg 543
             ||||||| |||||
Sbjct: 924  gcatagccaccttg 911



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 74/89 (83%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                       
Query: 551 tacccttgtcctgccggagcactctgaccatatgctgctggcccttgcccactctgctgg 610
           |||||| | ||||| || |||||||||||||||| ||||||| ||||  |||  |||| |
Sbjct: 891 taccctggccctgctggtgcactctgaccatatgttgctggcgcttgtgcaccttgct-g 833

                                        
Query: 611 cgggtagccctgctgagcatacccatcag 639
            ||||| | |||||||| |||||||||||
Sbjct: 832 tgggtaactctgctgagaatacccatcag 804

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>gb|AY104446.1| Zea mays PCO085677 mRNA sequence
          Length = 1489

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                       
Query: 408 catatcctgactgtgggtaggcattcccatagttgggatcagccggggctccctgataac 467
           ||||||||| ||||||||||||| | |||||||| ||||| || || |||||||| || |
Sbjct: 928 catatcctggctgtgggtaggcacttccatagttaggatctgctggagctccctggtacc 869

                                                      
Query: 468 catagtttgcattgttttgagctgactgatcaccatatgctgg 510
           ||||| | |||||| |||||||||  || ||||||||||||||
Sbjct: 868 catagctcgcattggtttgagctgcttgctcaccatatgctgg 826



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 69/81 (85%), Gaps = 3/81 (3%)
 Strand = Plus / Minus

                                                                        
Query: 307  tgctggtggtgcagactgatcataacttggcggatttgtagctggtggctgggtgtatcc 366
            ||||||||  |||||||| ||||||| ||| ||||||||||   | ||||||||||||||
Sbjct: 1059 tgctggtgccgcagactgctcataacctggaggatttgtag---gcggctgggtgtatcc 1003

                                 
Query: 367  tgcctgaccatatccaggctg 387
            |||||| |||||  |||||||
Sbjct: 1002 tgcctggccatacgcaggctg 982



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 60/71 (84%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 569 gcactctgaccatatgctgctggcccttgcccactctgctggcgggtagccctgctgagc 628
           ||||||||||||||||  |||||  | ||||||| ||||| | ||||| ||||| |||||
Sbjct: 764 gcactctgaccatatggagctggtgcctgcccaccctgct-gtgggtaaccctgttgagc 706

                      
Query: 629 atacccatcag 639
           ||| |||||||
Sbjct: 705 atatccatcag 695

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>emb|BX005229.30| Zebrafish DNA sequence from clone DKEY-21D17 in linkage group 17,
             complete sequence
          Length = 94988

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 329   taacttggcggatttgtagctggtg 353
             |||||||||||||||||||||||||
Sbjct: 18820 taacttggcggatttgtagctggtg 18844

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>emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in linkage group 17,
              complete sequence
          Length = 204195

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 329    taacttggcggatttgtagctggtg 353
              |||||||||||||||||||||||||
Sbjct: 121855 taacttggcggatttgtagctggtg 121879

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>gb|AC163350.4| Mus musculus BAC clone RP23-186B12 from chromosome 9, complete sequence
          Length = 203468

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 170    ctgtcagtggggcttcagagc 190
              |||||||||||||||||||||
Sbjct: 115626 ctgtcagtggggcttcagagc 115606

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>emb|BX296551.4| Zebrafish DNA sequence from clone CH211-224L10 in linkage group 23,
             complete sequence
          Length = 180447

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 125   atttaaaacagcaggtgacaaaaca 149
             |||||||||||||| ||||||||||
Sbjct: 62900 atttaaaacagcagttgacaaaaca 62876

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>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence
          Length = 189805

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 590    ggcccttgcccactctgctgg 610
              |||||||||||||||||||||
Sbjct: 116402 ggcccttgcccactctgctgg 116382

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>ref|XM_471173.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 cagcagcagtagcaggctga 241
           ||||||||||||||||||||
Sbjct: 249 cagcagcagtagcaggctga 268

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>ref|NM_191074.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 tttgagctgctggtggtgca 319
           ||||||||||||||||||||
Sbjct: 21  tttgagctgctggtggtgca 2

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>ref|XM_414616.1| PREDICTED: Gallus gallus similar to Chromosome 5 open reading frame 5
            (LOC416297), mRNA
          Length = 4837

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 294  agccactttgagctgctggtggtg 317
            |||| |||||||||||||||||||
Sbjct: 1198 agcctctttgagctgctggtggtg 1221

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>gb|AC149132.1| Pan troglodytes chromosome X clone PTB-099J01 map human ortholog p22.12
              complete sequence
          Length = 215862

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tgttctcaactcaaacaggg 39
              ||||||||||||||||||||
Sbjct: 188283 tgttctcaactcaaacaggg 188302

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>gb|BT014575.1| Lycopersicon esculentum clone 134030R, mRNA sequence
          Length = 2526

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 457  tccctgataaccatagtttgcattgttt 484
            ||||||||||||||||  ||||||||||
Sbjct: 2123 tccctgataaccatagcctgcattgttt 2096

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>ref|XM_846688.1| PREDICTED: Canis familiaris similar to A-kinase anchor protein 11
            (Protein kinase A anchoring protein 11) (PRKA11) (A
            kinase anchor protein 220 kDa) (AKAP 220) (hAKAP220)
            (LOC609431), mRNA
          Length = 5823

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  atttaaaacagcaggtgaca 144
            ||||||||||||||||||||
Sbjct: 3873 atttaaaacagcaggtgaca 3854

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>emb|CR626889.13| Zebrafish DNA sequence from clone DKEY-4P15 in linkage group 15,
             complete sequence
          Length = 205513

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   ggcaaagatttaaaacagcaggtg 141
             |||||||||||| |||||||||||
Sbjct: 22171 ggcaaagatttagaacagcaggtg 22194

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>gb|AC099511.5| Homo sapiens chromosome 16 clone RP11-293N14, complete sequence
          Length = 173627

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     gggtttttgttctcaactca 32
              ||||||||||||||||||||
Sbjct: 120760 gggtttttgttctcaactca 120741

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>gb|AC117251.3| Mus musculus BAC clone RP24-372C12 from chromosome 8, complete sequence
          Length = 191927

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 462   gataaccatagtttgcattgtttt 485
             |||||||||||||| |||||||||
Sbjct: 95308 gataaccatagtttccattgtttt 95331

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>gb|AC091296.3| Pan troglodytes clone RP43-109G19, complete sequence
          Length = 185979

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    ctgactgatcaccatatgct 508
              ||||||||||||||||||||
Sbjct: 164608 ctgactgatcaccatatgct 164627

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>gb|AC121773.3| Mus musculus BAC clone RP23-349P14 from chromosome 1, complete sequence
          Length = 191790

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    aacatagctttcaaatatat 165
              ||||||||||||||||||||
Sbjct: 155854 aacatagctttcaaatatat 155873

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>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7,
            complete sequence
          Length = 194826

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   aagttaatataacaatctac 66
            ||||||||||||||||||||
Sbjct: 5777 aagttaatataacaatctac 5758

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>emb|AL807772.12| Human DNA sequence from clone RP11-188G3 on chromosome X Contains the
             5' end of the RPS6KA3 gene for ribosomal protein S6
             kinase, 90kDa, polypeptide 3 (RSK, HU-2, HU-3, RSK2,
             MRX19, ISPK-1, MAPKAPK1B) and a CpG island, complete
             sequence
          Length = 129996

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tgttctcaactcaaacaggg 39
             ||||||||||||||||||||
Sbjct: 97984 tgttctcaactcaaacaggg 98003

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>emb|CR381700.6| Zebrafish DNA sequence from clone CH211-198F4 in linkage group 14,
              complete sequence
          Length = 203630

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     gttcaaagttaatataacaa 61
              ||||||||||||||||||||
Sbjct: 191284 gttcaaagttaatataacaa 191265



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     gttcaaagttaatataacaa 61
              ||||||||||||||||||||
Sbjct: 189689 gttcaaagttaatataacaa 189708

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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 599     ccactctgctggcgggtagc 618
               ||||||||||||||||||||
Sbjct: 2050191 ccactctgctggcgggtagc 2050210

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>emb|AL732629.6| Zebrafish DNA sequence from clone CH211-146F4 in linkage group 12
             Contains a novel gene similar to human BAP28, a putative
             novel gene, a novel gene similar to human ARG1 (liver
             arginase), a novel gene similar to human and rodent P4HA1
             (procollagen-proline, 2-oxoglutarate 4-dioxygenase
             (proline 4-hydroxylase), alpha polypeptide I), a novel
             gene for a protein with a NUDIX domain and four CpG
             islands, complete sequence
          Length = 164474

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aacatggcaaagatttaaaa 132
             ||||||||||||||||||||
Sbjct: 95332 aacatggcaaagatttaaaa 95313

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>gb|AC019288.8| Homo sapiens chromosome 15, clone RP11-139F4, complete sequence
          Length = 138517

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aacatagctttcaaatatat 165
             ||||||||||||||||||||
Sbjct: 53560 aacatagctttcaaatatat 53541

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>emb|AJ621739.1| Gallus gallus partial KIF3A gene for kinesin-like protein KIF3A, exons
             1-2 BAC bW075D23 clone, contig 5
          Length = 62198

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   aaaacagcaggtgacaaaac 148
             ||||||||||||||||||||
Sbjct: 28374 aaaacagcaggtgacaaaac 28355

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>gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence
          Length = 124309

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   tttcaaatatatcttgctgt 173
             ||||||||||||||||||||
Sbjct: 17874 tttcaaatatatcttgctgt 17855

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>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0432B10
          Length = 131918

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    tttgagctgctggtggtgca 319
              ||||||||||||||||||||
Sbjct: 126906 tttgagctgctggtggtgca 126887

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>gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    aaacatagctttcaaatata 164
              ||||||||||||||||||||
Sbjct: 130392 aaacatagctttcaaatata 130373

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>gb|AC113366.2| Homo sapiens chromosome 5 clone RP11-109F5, complete sequence
          Length = 168484

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   caggtgacaaaacatagctt 155
             ||||||||||||||||||||
Sbjct: 13760 caggtgacaaaacatagctt 13741

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>gb|AC007171.5| Arabidopsis thaliana chromosome 2 clone T8O18 map mi54, complete
             sequence
          Length = 74494

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   tgataaccatagtttgcatt 480
             ||||||||||||||||||||
Sbjct: 45670 tgataaccatagtttgcatt 45689

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>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete
              sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tttcaaatatatcttgctgt 173
              ||||||||||||||||||||
Sbjct: 202402 tttcaaatatatcttgctgt 202421

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>gb|AC005231.3| Homo sapiens PAC clone RP5-1186P10 from 7, complete sequence
          Length = 102112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   ctgactgatcaccatatgct 508
             ||||||||||||||||||||
Sbjct: 64018 ctgactgatcaccatatgct 63999

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>gb|AC010437.7|AC010437 Homo sapiens chromosome 5 clone CTD-2217J21, complete sequence
          Length = 103696

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   caggtgacaaaacatagctt 155
             ||||||||||||||||||||
Sbjct: 20546 caggtgacaaaacatagctt 20565

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     cagcagcagtagcaggctga 241
               ||||||||||||||||||||
Sbjct: 2003955 cagcagcagtagcaggctga 2003974

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 217      gtatccagcagcagtagcaggctg 240
                |||||||||||||||| |||||||
Sbjct: 22451881 gtatccagcagcagtatcaggctg 22451858

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 300      tttgagctgctggtggtgca 319
                ||||||||||||||||||||
Sbjct: 34629612 tttgagctgctggtggtgca 34629593

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>gb|AC092379.4| Homo sapiens chromosome 16 clone RP11-707E24, complete sequence
          Length = 182300

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    gggtttttgttctcaactca 32
             ||||||||||||||||||||
Sbjct: 10345 gggtttttgttctcaactca 10326

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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tttgagctgctggtggtgca 319
             ||||||||||||||||||||
Sbjct: 81629 tttgagctgctggtggtgca 81610

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>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1003_C09
          Length = 124746

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   gtatccagcagcagtagcaggctg 240
             |||||||||||||||| |||||||
Sbjct: 88370 gtatccagcagcagtatcaggctg 88347

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>emb|BX119966.7| Zebrafish DNA sequence from clone CH211-266N15, complete sequence
          Length = 182813

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     aagttaatataacaatctac 66
              ||||||||||||||||||||
Sbjct: 179844 aagttaatataacaatctac 179863

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>dbj|AK103158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121B04, full
           insert sequence
          Length = 2476

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 tttgagctgctggtggtgca 319
           ||||||||||||||||||||
Sbjct: 203 tttgagctgctggtggtgca 184

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>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
             complete sequence
          Length = 126447

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   cagcagcagtagcaggctga 241
             ||||||||||||||||||||
Sbjct: 20615 cagcagcagtagcaggctga 20634

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>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete
             sequence
          Length = 211288

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aaaacagcaggtgacaaaac 148
             ||||||||||||||||||||
Sbjct: 69601 aaaacagcaggtgacaaaac 69620

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>emb|CR925745.5| Zebrafish DNA sequence from clone DKEYP-100G5 in linkage group 10,
             complete sequence
          Length = 197787

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tccagcagcagtagcaggct 239
             ||||||||||||||||||||
Sbjct: 71741 tccagcagcagtagcaggct 71722

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>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete
              sequence
          Length = 194045

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    ctctgaccatatgctgctgg 591
              ||||||||||||||||||||
Sbjct: 174581 ctctgaccatatgctgctgg 174562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,674,858
Number of Sequences: 3902068
Number of extensions: 5674858
Number of successful extensions: 104710
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104479
Number of HSP's gapped (non-prelim): 219
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result