ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd1b23 |
|---|---|
| Clone Library Name | barley_pub |
>OPT7_ARATH (O82485) Oligopeptide transporter 7 (AtOPT7)| Length = 766 Score = 300 bits (769), Expect = 2e-81 Identities = 135/186 (72%), Positives = 156/186 (83%) Frame = -3 Query: 665 DSIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAI 486 ++IPNIC++ S WTCP D VFYDASVIWGLI PRRIFGDLG Y +VNWFFL GAI Sbjct: 584 ETIPNICDSVT---NSVWTCPSDKVFYDASVIWGLIGPRRIFGDLGLYKSVNWFFLVGAI 640 Query: 485 APLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRR 306 AP+LVW A + FP Q WI LINMPVLI +T MPPATAVNY TW+ GFLSG+VV+RYR Sbjct: 641 APILVWLASRMFPRQEWIKLINMPVLISATSSMPPATAVNYTTWVLAGFLSGFVVFRYRP 700 Query: 305 DWWERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGNDLDGCPLASCPTAKGIFVE 126 + W+R+NY+LSGALDAGLAFM VL+Y+CLGLEN+SL+WWGN+LDGCPLASCPTA GI VE Sbjct: 701 NLWQRYNYVLSGALDAGLAFMGVLLYMCLGLENVSLDWWGNELDGCPLASCPTAPGIIVE 760 Query: 125 GCPVYT 108 GCP+YT Sbjct: 761 GCPLYT 766
>OPT4_ARATH (Q9FME8) Oligopeptide transporter 4 (AtOPT4)| Length = 729 Score = 276 bits (705), Expect = 5e-74 Identities = 116/184 (63%), Positives = 148/184 (80%) Frame = -3 Query: 665 DSIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAI 486 +SI NIC ELLPP SPWTCPGD VF+DASVIWGL+ P+RIFG G Y+A+NWFFLGGA+ Sbjct: 545 NSIKNICQEELLPPNSPWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYAAMNWFFLGGAL 604 Query: 485 APLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRR 306 P++VW HKAFP ++WI L+N+PVL+G+T MPPATAVNY +WI VG + V+RYR+ Sbjct: 605 GPVIVWSLHKAFPKRSWIPLVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRK 664 Query: 305 DWWERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGNDLDGCPLASCPTAKGIFVE 126 WW+R+NY+LS A+DAG+AFMAVL+Y +G+E SL+WWG + C LA CPTA+G+ V+ Sbjct: 665 SWWQRYNYVLSAAMDAGVAFMAVLLYFSVGMEEKSLDWWGTRGEHCDLAKCPTARGVIVD 724 Query: 125 GCPV 114 GCPV Sbjct: 725 GCPV 728
>OPT6_ARATH (Q9T095) Oligopeptide transporter 6 (AtOPT6)| Length = 736 Score = 270 bits (691), Expect = 2e-72 Identities = 117/187 (62%), Positives = 147/187 (78%), Gaps = 2/187 (1%) Frame = -3 Query: 665 DSIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAI 486 + IP++C+T LLP S WTCP D VF+DASVIWGL+ PRR+FGDLG YS VNWFFL GAI Sbjct: 550 EEIPHLCDTSLLPSDSQWTCPMDRVFFDASVIWGLVGPRRVFGDLGEYSNVNWFFLVGAI 609 Query: 485 APLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRR 306 APLLVW A K FP Q WI I++PVL+G+T MPPATAVN+ +W+ V F+ G+ +++YRR Sbjct: 610 APLLVWLATKMFPAQTWIAKIHIPVLVGATAMMPPATAVNFTSWLIVAFIFGHFIFKYRR 669 Query: 305 DWWERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGN--DLDGCPLASCPTAKGIF 132 WW ++NY+LSG LDAG AFM +L++L LG + I + WWGN D D CPLASCPTAKG+ Sbjct: 670 VWWTKYNYVLSGGLDAGSAFMTILLFLALGRKGIEVQWWGNSGDRDTCPLASCPTAKGVV 729 Query: 131 VEGCPVY 111 V+GCPV+ Sbjct: 730 VKGCPVF 736
>OPT8_ARATH (Q9FJD1) Probable oligopeptide transporter 8 (AtOPT8)| Length = 733 Score = 269 bits (688), Expect = 5e-72 Identities = 111/183 (60%), Positives = 149/183 (81%) Frame = -3 Query: 659 IPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIAP 480 IPN+C+T LLPPGS WTCP D VF+DASVIWGL+ PRR+FGDLG YS +NWFF+GGAIAP Sbjct: 551 IPNLCDTNLLPPGSQWTCPSDRVFFDASVIWGLVGPRRMFGDLGEYSNINWFFVGGAIAP 610 Query: 479 LLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRDW 300 LV+ A + FP++ WI I++PVLIG+T MPPA+AVN+ +W+ + F+ G+ V++YRR+W Sbjct: 611 ALVYLASRLFPNKKWISDIHIPVLIGATAIMPPASAVNFTSWLVMAFVFGHFVFKYRREW 670 Query: 299 WERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGNDLDGCPLASCPTAKGIFVEGC 120 W+R+NY+LSG +DAG FM+VL++L L I+++WWGN +GCP+A CPTAKG+ V GC Sbjct: 671 WQRYNYVLSGGMDAGTGFMSVLLFLALQRSEIAIDWWGNSGEGCPVAKCPTAKGVVVHGC 730 Query: 119 PVY 111 PV+ Sbjct: 731 PVF 733
>OPT2_ARATH (O04514) Probable oligopeptide transporter 2 (AtOPT2)| Length = 722 Score = 254 bits (650), Expect = 1e-67 Identities = 112/185 (60%), Positives = 138/185 (74%), Gaps = 1/185 (0%) Frame = -3 Query: 662 SIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIA 483 S+ NIC ELLPP SPWTCP D VF+DASVIWGL+ P+RIFG LG Y A+NWFFLGG I Sbjct: 512 SVENICQKELLPPNSPWTCPSDRVFFDASVIWGLVGPKRIFGRLGNYPALNWFFLGGLIG 571 Query: 482 PLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRD 303 P+LVW KAFP + WI IN+PVL+G+T MPPAT+VN+ WI VG + Y V++Y + Sbjct: 572 PVLVWLLQKAFPTKTWISQINLPVLLGATAAMPPATSVNFNCWIIVGVIFNYFVFKYCKK 631 Query: 302 WWERHNYLLSGALDAGLAFMAVLIYLCLGLENISLN-WWGNDLDGCPLASCPTAKGIFVE 126 WW+R+NY+LS ALDAGLAFM VL+Y L + IS+N WWG + CPLASCPTA G+ V+ Sbjct: 632 WWQRYNYVLSAALDAGLAFMGVLLYFSLTMNGISINHWWGAKGENCPLASCPTAPGVLVD 691 Query: 125 GCPVY 111 V+ Sbjct: 692 DFTVF 696
>OPT9_ARATH (Q9FJD2) Probable oligopeptide transporter 9 (AtOPT9)| Length = 741 Score = 253 bits (647), Expect = 3e-67 Identities = 109/184 (59%), Positives = 139/184 (75%), Gaps = 2/184 (1%) Frame = -3 Query: 659 IPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIAP 480 IP++C+ LLPP S WTCP D VF+DASVIWGL+ PRR+FG+LG Y+A+NWFFL GAIAP Sbjct: 557 IPHLCDKSLLPPDSEWTCPMDRVFFDASVIWGLVGPRRMFGNLGEYAAINWFFLVGAIAP 616 Query: 479 LLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRDW 300 VW A KAFP WI I+ PV++G+T MPPA AVN+ +W V F+ G+ +Y+Y+R W Sbjct: 617 FFVWLATKAFPAHKWISKIHFPVILGATSMMPPAMAVNFTSWCIVAFVFGHFLYKYKRQW 676 Query: 299 WERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGN--DLDGCPLASCPTAKGIFVE 126 W+++NY+LSG LDAG AFM +LI+L +G + I L WWGN D C LASCPTAKG+ + Sbjct: 677 WKKYNYVLSGGLDAGTAFMTILIFLSVGRKGIGLLWWGNADDSTNCSLASCPTAKGVIMH 736 Query: 125 GCPV 114 GCPV Sbjct: 737 GCPV 740
>OPT5_ARATH (Q9SUA4) Oligopeptide transporter 5 (AtOPT5)| Length = 753 Score = 225 bits (573), Expect = 1e-58 Identities = 101/186 (54%), Positives = 130/186 (69%), Gaps = 2/186 (1%) Frame = -3 Query: 662 SIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIA 483 S+ NICNT++LP SPWTCPGD VFY+AS+IWG+I P R+F G Y +NWFFL G +A Sbjct: 568 SVENICNTDMLPKSSPWTCPGDVVFYNASIIWGIIGPGRMFTSKGIYPGMNWFFLIGFLA 627 Query: 482 PLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRD 303 P+ VWF + FP++ WI I++P++ MP A AV+Y +W VG + Y ++R + Sbjct: 628 PVPVWFFARKFPEKKWIHQIHIPLIFSGANVMPMAKAVHYWSWFAVGIVFNYYIFRRYKG 687 Query: 302 WWERHNYLLSGALDAGLAFMAVLIYLCLGLENISL-NWWGND-LDGCPLASCPTAKGIFV 129 WW RHNY+LS ALDAG A M VLIY L NISL +WWGN+ D CPLA+CPT KGI Sbjct: 688 WWARHNYILSAALDAGTAVMGVLIYFALQNNNISLPDWWGNENTDHCPLANCPTEKGIVA 747 Query: 128 EGCPVY 111 +GCPV+ Sbjct: 748 KGCPVF 753
>OPT1_ARATH (Q9FG72) Oligopeptide transporter 1 (AtOPT1)| Length = 755 Score = 219 bits (558), Expect = 6e-57 Identities = 97/186 (52%), Positives = 128/186 (68%), Gaps = 2/186 (1%) Frame = -3 Query: 662 SIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIA 483 S+ NICN +LLP GSPWTCPGD VFY+AS+IWG+I P R+F G Y +NWFFL G +A Sbjct: 570 SVENICNVDLLPVGSPWTCPGDEVFYNASIIWGVIGPGRMFTKEGIYPGMNWFFLIGLLA 629 Query: 482 PLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRD 303 P+ W+ K FP++ W+ I++P++ + MP A AV+Y +W VG + Y ++R + Sbjct: 630 PVPFWYLSKKFPEKKWLKQIHVPLIFSAVSAMPQAKAVHYWSWAIVGVVFNYYIFRRFKT 689 Query: 302 WWERHNYLLSGALDAGLAFMAVLIYLCLGLENISL-NWWG-NDLDGCPLASCPTAKGIFV 129 WW RHNY+LS ALDAG A M VLI+ +ISL +WWG + D CPLA CP AKG+ V Sbjct: 690 WWARHNYILSAALDAGTAIMGVLIFFAFQNNDISLPDWWGLENSDHCPLAHCPLAKGVVV 749 Query: 128 EGCPVY 111 EGCPV+ Sbjct: 750 EGCPVF 755
>OPT3_ARATH (O23482) Probable oligopeptide transporter 3 (AtOPT3)| Length = 737 Score = 207 bits (528), Expect = 2e-53 Identities = 95/185 (51%), Positives = 122/185 (65%) Frame = -3 Query: 665 DSIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAI 486 +SI +IC+ E P SPWTCP V +DASVIWGLI PRR+FG G Y + FFL GA+ Sbjct: 553 ESIQDICDIEGDHPNSPWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVGFFLIGAV 612 Query: 485 APLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRR 306 P+ VW K FP++ WI LIN+PV+ MPPAT N +W+ G + Y V+ Y + Sbjct: 613 LPVPVWALSKIFPNKKWIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHK 672 Query: 305 DWWERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGNDLDGCPLASCPTAKGIFVE 126 WW+++NY+LS ALDAG AFM VL++ L L WWG ++D CPLASCPTA GI + Sbjct: 673 RWWQKYNYVLSAALDAGTAFMGVLLFFALQNAGHDLKWWGTEVDHCPLASCPTAPGIKAK 732 Query: 125 GCPVY 111 GCPV+ Sbjct: 733 GCPVF 737
>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4| Length = 785 Score = 140 bits (353), Expect = 3e-33 Identities = 61/162 (37%), Positives = 97/162 (59%), Gaps = 1/162 (0%) Frame = -3 Query: 662 SIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIA 483 +I N+C + +TCP VF+++SVIWG+I P+R+F TY+ + +F+L G + Sbjct: 598 NIDNVCQAD---QPDNYTCPNATVFFNSSVIWGVIGPKRMFSGKNTYTGLQYFWLAGVLG 654 Query: 482 PLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRD 303 +L W K +P Q W +N P++ G TG +PPAT VNY+ W +G Y + + D Sbjct: 655 TILFWALWKKWP-QKWWGQLNGPLIFGGTGYIPPATPVNYLAWSGIGLFFNYYLKKIFAD 713 Query: 302 WWERHNYLLSGALDAGLAFMAVLIYLCLGLENISL-NWWGND 180 WW+++N+ LS ALD G ++++ CL L ++ +WWGND Sbjct: 714 WWQKYNFTLSAALDTGTQLSVIILFFCLQLPMVNFPDWWGND 755
>OPT1_YEAST (P40897) Oligopeptide transporter 1| Length = 799 Score = 99.4 bits (246), Expect = 9e-21 Identities = 51/162 (31%), Positives = 87/162 (53%) Frame = -3 Query: 662 SIPNICNTELLPPGSPWTCPGDHVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIA 483 +I +C T+ P G +TC ++AS+IW L P+ +F Y+ + WFFL G + Sbjct: 617 NIDGLCTTDQ-PNG--FTCANGRTVFNASIIWSL--PKYLFSSGRIYNPLMWFFLIGLLF 671 Query: 482 PLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFLSGYVVYRYRRD 303 PL V+ FP + I+ PV G +PP+T NY + + F + R+R Sbjct: 672 PLAVYAVQWKFPKFKFAKHIHTPVFFTGPGNIPPSTPYNYSLFFAMSFCLNLIRKRWRA- 730 Query: 302 WWERHNYLLSGALDAGLAFMAVLIYLCLGLENISLNWWGNDL 177 W+ ++N+++ ++AG+A V+I+LC+ L+WWGN++ Sbjct: 731 WFNKYNFVMGAGVEAGVAISVVIIFLCVQYPGGKLSWWGNNV 772
>PO2F2_HUMAN (P09086) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 478 Score = 36.6 bits (83), Expect = 0.070 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = +2 Query: 218 LGTGKLTRP*MPNQHLVHPRAGNCVAPTSHADIYKPHSLTKTQQIS 355 L T +TRP +P+ HL HP+ C+ P SH + +P L + +Q + Sbjct: 163 LPTQAVTRPTLPDPHLSHPQPPKCLEPPSHPE--EPSDLEELEQFA 206
>PO2F2_PIG (Q29013) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 478 Score = 31.6 bits (70), Expect = 2.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 218 LGTGKLTRP*MPNQHLVHPRAGNCVAPTSHAD 313 L T +TRP + + HL HP+ C+ P SH + Sbjct: 164 LPTQAVTRPTLSDPHLSHPQPPKCLEPPSHPE 195
>CRCB2_YERPS (Q667R0) Protein crcB homolog 2| Length = 126 Score = 30.0 bits (66), Expect = 6.5 Identities = 27/88 (30%), Positives = 37/88 (42%) Frame = -3 Query: 515 VNWFFLGGAIAPLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITWIFVGFL 336 V W LGG I LL W WI L V G P T + I+ FV Sbjct: 6 VMWVGLGGGIGSLLRW----------WIGLSIGKVY---KGNFPLGTFLINISGAFV--- 49 Query: 335 SGYVVYRYRRDWWERHNYLLSGALDAGL 252 GY+ + DW +R+ L++ A+ G+ Sbjct: 50 IGYLSILFSVDWRDRYGDLMNAAVLTGI 77
>LGT_BRUSU (Q8FZF5) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 281 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Frame = -3 Query: 518 AVNWFFLGGAIAPLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITW----I 351 AV+W+ LG + L W+ K + + N P M P +++ W + Sbjct: 27 AVHWYGLGYVVGILFAWWYGKKLLRSHRLWANNQP-------PMAPEALDDFVIWAALGV 79 Query: 350 FVGFLSGYVVYRYRRDWWERHNYLLSGALDAGLAF 246 +G GYV++ Y ++ + + D G++F Sbjct: 80 VLGGRIGYVLF-YNFSYYISNPLAIPALWDGGMSF 113
>LGT_BRUME (Q8YIF6) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 281 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Frame = -3 Query: 518 AVNWFFLGGAIAPLLVWFAHKAFPDQNWILLINMPVLIGSTGQMPPATAVNYITW----I 351 AV+W+ LG + L W+ K + + N P M P +++ W + Sbjct: 27 AVHWYGLGYVVGILFAWWYGKKLLRSHRLWANNQP-------PMAPEALDDFVIWAALGV 79 Query: 350 FVGFLSGYVVYRYRRDWWERHNYLLSGALDAGLAF 246 +G GYV++ Y ++ + + D G++F Sbjct: 80 VLGGRIGYVLF-YNFSYYISNPLAIPALWDGGMSF 113
>KIRR2_HUMAN (Q6UWL6) Kin of IRRE-like protein 2 precursor (Kin of irregular| chiasm-like protein 2) (Nephrin-like protein 3) Length = 708 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -3 Query: 632 LPPGSPWTCPGDHVFYDASVIWGLISPRRIF 540 LPP SP PG FYD + G++ P R++ Sbjct: 625 LPPPSPLGPPGTPTFYDFNPHLGMVPPCRLY 655
>Y498_MYCBO (P64712) Hypothetical protein Mb0498| Length = 201 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -3 Query: 596 HVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIAPLLVWFAHKAF 450 HV+ D V+ G ++ S + WFF GA A +VWFA F Sbjct: 112 HVYLDTVVLIGALANEE--------SDLRWFFGAGAWAASVVWFAVLGF 152
>Y488_MYCTU (P64711) Hypothetical protein Rv0488/MT0507| Length = 201 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -3 Query: 596 HVFYDASVIWGLISPRRIFGDLGTYSAVNWFFLGGAIAPLLVWFAHKAF 450 HV+ D V+ G ++ S + WFF GA A +VWFA F Sbjct: 112 HVYLDTVVLIGALANEE--------SDLRWFFGAGAWAASVVWFAVLGF 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,897,344 Number of Sequences: 219361 Number of extensions: 2902928 Number of successful extensions: 6893 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6883 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
